FFCP PHASE1:Hg19::chr20:35202909..35202963,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:35202909..35202963,+
|short_description=p2@TGIF2,p3@C20orf24
|description=CAGE_peak_2_at_TGIF2_5end,CAGE_peak_3_at_C20orf24_5end
|association_with_transcr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=60436,100527943,55969 | |EntrezGene=60436,100527943,55969 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15764,15870 | |HGNC=15764,15870 | ||
|TSSclassifier=strong | |||
|UniProt=Q9GZN2 | |UniProt=Q9GZN2 | ||
|association_with_transcript=0bp_to_ENST00000558028,ENST00000558530,NM_001199515,NM_001199535,uc002xfo.2_5end | |||
|cluster_id=chr20:35202909..35202963,+ | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_2_at_TGIF2_5end,CAGE_peak_3_at_C20orf24_5end | |||
|id=chr20:35202909..35202963,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.74e-18!254;CL:0002321!1.99e-08!248;CL:0002319!3.75e-08!25;CL:0000220!7.90e-08!246;CL:0000221!3.90e-07!71;CL:0000133!7.28e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002319;2.36e-08;25!CL:0002322;5.15e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.27e-14,253;CL:0000133,6.81e-09,59;CL:0002319,2.97e-08,25;CL:0000221,6.45e-08,72;CL:0002321,7.07e-08,250;CL:0000223,1.64e-07,58;CL:0002322,5.66e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.05e-20!235;DOID:14566!1.25e-19!239;DOID:0050687!5.76e-16!143;DOID:305!3.15e-12!106;DOID:3095!9.81e-10!22;DOID:2994!9.81e-10!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;3.26e-15;22!DOID:2994;3.26e-15;22!DOID:171;1.17e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:162,3.97e-16,235;DOID:3095,2.95e-15,22;DOID:2994,2.95e-15,22;DOID:14566,3.92e-15,239;DOID:0050687,1.47e-14,143;DOID:305,4.15e-09,106;DOID:171,1.53e-08,10 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p2@TGIF2,p3@C20orf24 | |||
}} | }} |
Latest revision as of 23:28, 15 September 2015
Short description: | p2@TGIF2, p3@C20orf24 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TGIF2_5end, CAGE_peak_3_at_C20orf24_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000558028, ENST00000558530, NM_001199515, NM_001199535, uc002xfo.2_5end |
EntrezGene: | 60436,100527943,55969 |
HGNC: | 15870&submit=Submit 15764, 15870 |
UniProt: | Q9GZN2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.27e-14 | 253 |
neurectodermal cell | 6.81e-09 | 59 |
neural cell | 2.97e-08 | 25 |
ectodermal cell | 6.45e-08 | 72 |
embryonic cell | 7.07e-08 | 250 |
endodermal cell | 1.64e-07 | 58 |
embryonic stem cell | 5.66e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
cancer | 3.97e-16 | 235 |
germ cell and embryonal cancer | 2.95e-15 | 22 |
germ cell cancer | 2.95e-15 | 22 |
disease of cellular proliferation | 3.92e-15 | 239 |
cell type cancer | 1.47e-14 | 143 |
carcinoma | 4.15e-09 | 106 |
neuroectodermal tumor | 1.53e-08 | 10 |