FFCP PHASE1:Hg19::chr16:28153473..28153482,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr16:28153473..28153482,+ | |||
|coexpression_cluster_id=C2 | |coexpression_cluster_id=C2 | ||
|description=CAGE_peak_at_chr16:28153473..28153482,+ | |description=CAGE_peak_at_chr16:28153473..28153482,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000791!8.95e-27!18;CL:0000789!8.95e-27!18;CL:0002420!8.95e-27!18;CL:0002419!8.95e-27!18;CL:0000790!8.95e-27!18;CL:0000094!4.02e-26!8;CL:0000738!4.11e-26!140;CL:0000625!1.14e-21!11;CL:0000037!1.16e-20!172;CL:0000566!1.16e-20!172;CL:0002032!2.32e-19!165;CL:0000837!2.32e-19!165;CL:0000838!3.07e-19!52;CL:0000988!5.65e-19!182;CL:0000542!8.87e-19!53;CL:0000051!8.87e-19!53;CL:0000081!1.39e-18!11;CL:0002087!1.91e-18!119;CL:0000084!2.10e-18!25;CL:0000827!2.10e-18!25;CL:0002031!4.55e-16!124;CL:0000775!1.68e-11!3;CL:0000623!1.39e-10!3;CL:0000825!1.39e-10!3;CL:0000767!4.81e-10!3;CL:0000766!4.81e-09!76;CL:0000624!9.84e-09!6;CL:0000771!4.76e-08!2 | |ontology_enrichment_celltype=CL:0000791!8.95e-27!18;CL:0000789!8.95e-27!18;CL:0002420!8.95e-27!18;CL:0002419!8.95e-27!18;CL:0000790!8.95e-27!18;CL:0000094!4.02e-26!8;CL:0000738!4.11e-26!140;CL:0000625!1.14e-21!11;CL:0000037!1.16e-20!172;CL:0000566!1.16e-20!172;CL:0002032!2.32e-19!165;CL:0000837!2.32e-19!165;CL:0000838!3.07e-19!52;CL:0000988!5.65e-19!182;CL:0000542!8.87e-19!53;CL:0000051!8.87e-19!53;CL:0000081!1.39e-18!11;CL:0002087!1.91e-18!119;CL:0000084!2.10e-18!25;CL:0000827!2.10e-18!25;CL:0002031!4.55e-16!124;CL:0000775!1.68e-11!3;CL:0000623!1.39e-10!3;CL:0000825!1.39e-10!3;CL:0000767!4.81e-10!3;CL:0000766!4.81e-09!76;CL:0000624!9.84e-09!6;CL:0000771!4.76e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0000094;5.96e-50;8!CL:0000081;2.75e-36;11!CL:0000775;7.44e-35;3!CL:0000771;2.95e-23;2!CL:0000895;3.64e-12;1 | |ontology_enrichment_celltype_v019=CL:0000094;5.96e-50;8!CL:0000081;2.75e-36;11!CL:0000775;7.44e-35;3!CL:0000771;2.95e-23;2!CL:0000895;3.64e-12;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000094,4.83e-50,8;CL:0000081,2.37e-36,11;CL:0000775,7.04e-35,3;CL:0000771,2.79e-23,2;CL:0000810,4.31e-12,1;CL:0000895,4.31e-12,1;CL:0002436,4.31e-12,1;CL:0002427,4.31e-12,1;CL:0002428,4.31e-12,1;CL:0002429,4.31e-12,1;CL:0002433,4.31e-12,1;CL:0002431,4.31e-12,1;CL:0002432,4.31e-12,1;CL:0000766,6.85e-07,72;CL:0000738,8.83e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002427;3.64e-12;1 | |ontology_enrichment_development_v019=CL:0002427;3.64e-12;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.46e-20!15;UBERON:0000179!1.46e-20!15;UBERON:0000463!1.46e-20!15;UBERON:0002193!2.33e-13!112;UBERON:0002390!8.97e-13!102;UBERON:0003061!8.97e-13!102;UBERON:0002370!2.06e-07!4;UBERON:0005058!2.06e-07!4;UBERON:0009113!2.06e-07!4;UBERON:0003295!2.06e-07!4;UBERON:0005562!2.06e-07!4;UBERON:0004177!3.82e-07!7 | |ontology_enrichment_uberon=UBERON:0000178!1.46e-20!15;UBERON:0000179!1.46e-20!15;UBERON:0000463!1.46e-20!15;UBERON:0002193!2.33e-13!112;UBERON:0002390!8.97e-13!102;UBERON:0003061!8.97e-13!102;UBERON:0002370!2.06e-07!4;UBERON:0005058!2.06e-07!4;UBERON:0009113!2.06e-07!4;UBERON:0003295!2.06e-07!4;UBERON:0005562!2.06e-07!4;UBERON:0004177!3.82e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.20e-35;15!UBERON:0000179;2.20e-35;15!UBERON:0000463;2.20e-35;15!UBERON:0002390;3.60e-15;32!UBERON:0002193;2.57e-08;42 | |ontology_enrichment_uberon_v019=UBERON:0000178;2.20e-35;15!UBERON:0000179;2.20e-35;15!UBERON:0000463;2.20e-35;15!UBERON:0002390;3.60e-15;32!UBERON:0002193;2.57e-08;42 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.14e-35,15;UBERON:0000179,2.14e-35,15;UBERON:0000463,2.14e-35,15;UBERON:0002390,6.58e-08,98;UBERON:0003061,6.58e-08,98;UBERON:0002193,4.46e-07,108 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57345710739562,0.383829398097213,0.154816123316076,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0.145398238779565,0,0,0,0,0.619412741790207,0,0,0.47296445977717,0.344745680736619,0,2.70852973188684,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0.65156653411535,0,0,0,0,0,0,0.22465726229299,0,0.32145117339416,0,0,0,0,0,0.889509253863555,0.426730222566507,0,0.574752439954483,0,0,0,0,0,0,0.560508562981536,0,0.196709770113833,0.393010762749165,0,0,0.977766799900771,0,0,0,0,0,0.812411591295047,0,0,0,0,0,0.14828656316206,0,0,0,1.14966148080576,0.34362744548263,1.01207876807801,0,0,0.950452044448374,0.150575119077773,0.255973222308837,3.74792179657038,0.473554504088034,0.821127996921047,0.403213486449465,0.534880391567015,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.591092280605782,1.2937654491571,0.77005821767849,0,0,0,0,0,14.2311334549965,5.9832291840805,23.207268752418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647142602455851,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52234282769651,2.29391162142713,2.27858874869665,1.90585420366231,5.75907182320672,4.53931317834902,2.70015718619057,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.375935671919414,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193766729508018,0.124149428591716,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57345710739562,0.383829398097213,0.154816123316076,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0.145398238779565,0,0,0,0,0.619412741790207,0,0,0.47296445977717,0.344745680736619,0,2.70852973188684,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0.65156653411535,0,0,0,0,0,0,0.22465726229299,0,0.32145117339416,0,0,0,0,0,0.889509253863555,0.426730222566507,0,0.574752439954483,0,0,0,0,0,0,0.560508562981536,0,0.196709770113833,0.393010762749165,0,0,0.977766799900771,0,0,0,0,0,0.812411591295047,0,0,0,0,0,0.14828656316206,0,0,0,1.14966148080576,0.34362744548263,1.01207876807801,0,0,0.950452044448374,0.150575119077773,0.255973222308837,3.74792179657038,0.473554504088034,0.821127996921047,0.403213486449465,0.534880391567015,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.591092280605782,1.2937654491571,0.77005821767849,0,0,0,0,0,14.2311334549965,5.9832291840805,23.207268752418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647142602455851,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52234282769651,2.29391162142713,2.27858874869665,1.90585420366231,5.75907182320672,4.53931317834902,2.70015718619057,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.375935671919414,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193766729508018,0.124149428591716,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr16:28153473..28153482,+ | |short_description=p@chr16:28153473..28153482,+ | ||
}} | }} |
Latest revision as of 07:36, 25 July 2015
Short description: | p@chr16:28153473..28153482, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:28153473..28153482, + |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte | 4.83e-50 | 8 |
blood cell | 2.37e-36 | 11 |
neutrophil | 7.04e-35 | 3 |
eosinophil | 2.79e-23 | 2 |
CD4-positive, alpha-beta thymocyte | 4.31e-12 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 4.31e-12 | 1 |
mature CD4 single-positive thymocyte | 4.31e-12 | 1 |
resting double-positive thymocyte | 4.31e-12 | 1 |
double-positive blast | 4.31e-12 | 1 |
CD69-positive double-positive thymocyte | 4.31e-12 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 4.31e-12 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 4.31e-12 | 1 |
CD24-positive, CD4 single-positive thymocyte | 4.31e-12 | 1 |
myeloid leukocyte | 6.85e-07 | 72 |
leukocyte | 8.83e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
blood | 2.14e-35 | 15 |
haemolymphatic fluid | 2.14e-35 | 15 |
organism substance | 2.14e-35 | 15 |
hematopoietic system | 6.58e-08 | 98 |
blood island | 6.58e-08 | 98 |
hemolymphoid system | 4.46e-07 | 108 |