FFCP PHASE1:Hg19::chr19:57327807..57327832,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5178 | |EntrezGene=5178 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=8826 | |HGNC=8826 | ||
|TSSclassifier=strong | |||
|UniProt=Q9GZU2 | |UniProt=Q9GZU2 | ||
|association_with_transcript=-337bp_to_CR933682_5end | |association_with_transcript=-337bp_to_CR933682_5end | ||
|cluster_id=chr19:57327807..57327832,- | |||
|coexpression_cluster_id=C2503 | |coexpression_cluster_id=C2503 | ||
|description=CAGE_peak_9_at_PEG3_5end | |description=CAGE_peak_9_at_PEG3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000242!9.19e-08!2 | |ontology_enrichment_celltype=CL:0000242!9.19e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0000123;5.15e-21;2!CL:0000242;5.15e-21;2!CL:0002541;1.71e-14;3!CL:0000312;3.10e-09;5!CL:0000240;6.55e-08;6!CL:0000311;6.55e-08;6!CL:0000079;6.55e-08;6!CL:0000237;6.55e-08;6 | |ontology_enrichment_celltype_v019=CL:0000123;5.15e-21;2!CL:0000242;5.15e-21;2!CL:0002541;1.71e-14;3!CL:0000312;3.10e-09;5!CL:0000240;6.55e-08;6!CL:0000311;6.55e-08;6!CL:0000079;6.55e-08;6!CL:0000237;6.55e-08;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000242,3.81e-21,2;CL:0002541,1.60e-14,3;CL:0000312,2.74e-09,5;CL:0000240,5.92e-08,6;CL:0000311,5.92e-08,6;CL:0000079,5.92e-08,6;CL:0000237,5.92e-08,6;CL:0000036,5.92e-08,6;CL:0000357,5.92e-08,6;CL:0000114,5.92e-08,6 | |||
|ontology_enrichment_development_v019=CL:0000357;6.55e-08;6!CL:0000114;6.55e-08;6 | |ontology_enrichment_development_v019=CL:0000357;6.55e-08;6!CL:0000114;6.55e-08;6 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.04e-45!57;UBERON:0005068!3.04e-45!57;UBERON:0006241!3.04e-45!57;UBERON:0007135!3.04e-45!57;UBERON:0002616!1.80e-37!59;UBERON:0007023!5.72e-37!115;UBERON:0000955!1.71e-35!69;UBERON:0006238!1.71e-35!69;UBERON:0001017!3.32e-33!82;UBERON:0002780!2.21e-31!41;UBERON:0001890!2.21e-31!41;UBERON:0006240!2.21e-31!41;UBERON:0005743!2.64e-31!86;UBERON:0003080!1.62e-30!42;UBERON:0002346!5.12e-28!90;UBERON:0000073!1.32e-27!94;UBERON:0001016!1.32e-27!94;UBERON:0003075!1.95e-27!86;UBERON:0007284!1.95e-27!86;UBERON:0002020!1.79e-25!34;UBERON:0003528!1.79e-25!34;UBERON:0001893!4.39e-25!34;UBERON:0001869!8.03e-24!32;UBERON:0002791!4.71e-23!33;UBERON:0000033!1.19e-19!123;UBERON:0003056!2.11e-19!61;UBERON:0000924!2.16e-18!173;UBERON:0006601!2.16e-18!173;UBERON:0000153!2.27e-18!129;UBERON:0007811!2.27e-18!129;UBERON:0004121!1.05e-17!169;UBERON:0002308!2.25e-17!9;UBERON:0000125!2.25e-17!9;UBERON:0003076!9.81e-16!15;UBERON:0003057!9.81e-16!15;UBERON:0002619!1.80e-14!22;UBERON:0000369!1.02e-13!4;UBERON:0002435!1.02e-13!4;UBERON:0000204!1.02e-13!4;UBERON:0010082!1.02e-13!4;UBERON:0001950!3.67e-13!20;UBERON:0000956!1.56e-12!25;UBERON:0000203!1.56e-12!25;UBERON:0004733!3.51e-12!12;UBERON:0002028!3.51e-12!12;UBERON:0007277!3.51e-12!12;UBERON:0009663!1.29e-11!7;UBERON:0000025!1.80e-11!194;UBERON:0005383!3.21e-11!3;UBERON:0005382!3.21e-11!3;UBERON:0004732!3.63e-11!13;UBERON:0000988!1.63e-10!3;UBERON:0002298!8.58e-10!8;UBERON:0004111!3.54e-09!241;UBERON:0002420!5.87e-09!9;UBERON:0007245!5.87e-09!9;UBERON:0010009!5.87e-09!9;UBERON:0010011!5.87e-09!9;UBERON:0000454!5.87e-09!9;UBERON:0002680!6.74e-09!9;UBERON:0001895!6.74e-09!9;UBERON:0010092!6.74e-09!9;UBERON:0000200!1.27e-08!6;UBERON:0000062!3.06e-08!511;UBERON:0002148!5.73e-08!2;UBERON:0009662!5.73e-08!2;UBERON:0001873!6.56e-08!2;UBERON:0010122!6.56e-08!2;UBERON:0000007!8.31e-08!2;UBERON:0001894!9.33e-08!7;UBERON:0006222!9.33e-08!7;UBERON:0000477!4.65e-07!286 | |ontology_enrichment_uberon=UBERON:0001049!3.04e-45!57;UBERON:0005068!3.04e-45!57;UBERON:0006241!3.04e-45!57;UBERON:0007135!3.04e-45!57;UBERON:0002616!1.80e-37!59;UBERON:0007023!5.72e-37!115;UBERON:0000955!1.71e-35!69;UBERON:0006238!1.71e-35!69;UBERON:0001017!3.32e-33!82;UBERON:0002780!2.21e-31!41;UBERON:0001890!2.21e-31!41;UBERON:0006240!2.21e-31!41;UBERON:0005743!2.64e-31!86;UBERON:0003080!1.62e-30!42;UBERON:0002346!5.12e-28!90;UBERON:0000073!1.32e-27!94;UBERON:0001016!1.32e-27!94;UBERON:0003075!1.95e-27!86;UBERON:0007284!1.95e-27!86;UBERON:0002020!1.79e-25!34;UBERON:0003528!1.79e-25!34;UBERON:0001893!4.39e-25!34;UBERON:0001869!8.03e-24!32;UBERON:0002791!4.71e-23!33;UBERON:0000033!1.19e-19!123;UBERON:0003056!2.11e-19!61;UBERON:0000924!2.16e-18!173;UBERON:0006601!2.16e-18!173;UBERON:0000153!2.27e-18!129;UBERON:0007811!2.27e-18!129;UBERON:0004121!1.05e-17!169;UBERON:0002308!2.25e-17!9;UBERON:0000125!2.25e-17!9;UBERON:0003076!9.81e-16!15;UBERON:0003057!9.81e-16!15;UBERON:0002619!1.80e-14!22;UBERON:0000369!1.02e-13!4;UBERON:0002435!1.02e-13!4;UBERON:0000204!1.02e-13!4;UBERON:0010082!1.02e-13!4;UBERON:0001950!3.67e-13!20;UBERON:0000956!1.56e-12!25;UBERON:0000203!1.56e-12!25;UBERON:0004733!3.51e-12!12;UBERON:0002028!3.51e-12!12;UBERON:0007277!3.51e-12!12;UBERON:0009663!1.29e-11!7;UBERON:0000025!1.80e-11!194;UBERON:0005383!3.21e-11!3;UBERON:0005382!3.21e-11!3;UBERON:0004732!3.63e-11!13;UBERON:0000988!1.63e-10!3;UBERON:0002298!8.58e-10!8;UBERON:0004111!3.54e-09!241;UBERON:0002420!5.87e-09!9;UBERON:0007245!5.87e-09!9;UBERON:0010009!5.87e-09!9;UBERON:0010011!5.87e-09!9;UBERON:0000454!5.87e-09!9;UBERON:0002680!6.74e-09!9;UBERON:0001895!6.74e-09!9;UBERON:0010092!6.74e-09!9;UBERON:0000200!1.27e-08!6;UBERON:0000062!3.06e-08!511;UBERON:0002148!5.73e-08!2;UBERON:0009662!5.73e-08!2;UBERON:0001873!6.56e-08!2;UBERON:0010122!6.56e-08!2;UBERON:0000007!8.31e-08!2;UBERON:0001894!9.33e-08!7;UBERON:0006222!9.33e-08!7;UBERON:0000477!4.65e-07!286 | ||
|ontology_enrichment_uberon_v019=UBERON:0002771;3.11e-21;2!UBERON:0003124;1.71e-14;3!UBERON:0000920;1.71e-14;3!UBERON:0002346;3.26e-11;4!UBERON:0000923;3.26e-11;4!UBERON:0010316;3.26e-11;4!UBERON:0005291;3.26e-11;4!UBERON:0002021;3.10e-09;5!UBERON:0002050;3.10e-09;5!UBERON:0005423;3.10e-09;5!UBERON:0001950;1.34e-08;20!UBERON:0000200;5.54e-08;6!UBERON:0002619;6.19e-08;22!UBERON:0000956;3.96e-07;25!UBERON:0000203;3.96e-07;25!UBERON:0001871;5.08e-07;6 | |ontology_enrichment_uberon_v019=UBERON:0002771;3.11e-21;2!UBERON:0003124;1.71e-14;3!UBERON:0000920;1.71e-14;3!UBERON:0002346;3.26e-11;4!UBERON:0000923;3.26e-11;4!UBERON:0010316;3.26e-11;4!UBERON:0005291;3.26e-11;4!UBERON:0002021;3.10e-09;5!UBERON:0002050;3.10e-09;5!UBERON:0005423;3.10e-09;5!UBERON:0001950;1.34e-08;20!UBERON:0000200;5.54e-08;6!UBERON:0002619;6.19e-08;22!UBERON:0000956;3.96e-07;25!UBERON:0000203;3.96e-07;25!UBERON:0001871;5.08e-07;6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002771,3.11e-21,2;UBERON:0000920,1.60e-14,3;UBERON:0002021,3.49e-09,5;UBERON:0001950,1.42e-08,20;UBERON:0000200,5.54e-08,6;UBERON:0002619,6.52e-08,22;UBERON:0000956,4.15e-07,25;UBERON:0000203,4.15e-07,25;UBERON:0001871,5.08e-07,6;UBERON:0003124,5.70e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.593929361665277,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.463840490809256,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0.110579259931225,0.591095237907095,0,0,0,0,0,0.23056390438806,0.179515288819544,0.325942115766024,0.638002319463839,0,1.5991043280559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0.393915911536118,0.412079291905832,0.876246070104404,0,0,0,0.272406812223151,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.53876168215693,0.1251909307065,0,0.221858103073705,0.0620964029413835,0.138348634936231,0,0,0,0,1.87333962322753,0.144921028610825,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11542187833102,0,0,0,0,0,0,0.0642292250964595,0,0.319267718114302,1.02558182120378,0,0.138314504928436,0.322951291263702,0,0,0,0,0,0,0,0,0.300841313397029,0,0,0,0,0,0.135075169236789,0,0.206686796501184,0,0,0,0,0,0,0,0,0.606965604236632,0.227662191351298,0.177404740325278,0,0,0.0679697329768317,0.0657727735628491,0,0,0,0.942693539496011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0.218559560503957,0,0,0,0.196308467114945,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0.267964130156178,0,0.20686599172379,0,0,0,0,0,0,0,0,0.684466602170562,0,0,0,0,0,0,0,0,0.122241444182866,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.593929361665277,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.463840490809256,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0.110579259931225,0.591095237907095,0,0,0,0,0,0.23056390438806,0.179515288819544,0.325942115766024,0.638002319463839,0,1.5991043280559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0.393915911536118,0.412079291905832,0.876246070104404,0,0,0,0.272406812223151,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.53876168215693,0.1251909307065,0,0.221858103073705,0.0620964029413835,0.138348634936231,0,0,0,0,1.87333962322753,0.144921028610825,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11542187833102,0,0,0,0,0,0,0.0642292250964595,0,0.319267718114302,1.02558182120378,0,0.138314504928436,0.322951291263702,0,0,0,0,0,0,0,0,0.300841313397029,0,0,0,0,0,0.135075169236789,0,0.206686796501184,0,0,0,0,0,0,0,0,0.606965604236632,0.227662191351298,0.177404740325278,0,0,0.0679697329768317,0.0657727735628491,0,0,0,0.942693539496011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0.218559560503957,0,0,0,0.196308467114945,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0.267964130156178,0,0.20686599172379,0,0,0,0,0,0,0,0,0.684466602170562,0,0,0,0,0,0,0,0,0.122241444182866,0.406896178315738,0,0,0 | ||
|short_description=p9@PEG3 | |short_description=p9@PEG3 | ||
}} | }} |
Latest revision as of 05:04, 20 September 2015
Short description: | p9@PEG3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_PEG3_5end |
Coexpression cluster: | C2503_medial_merkel_neuroectodermal_chorionic_hepatocellular_pituitary_putamen |
Association with transcript: | -337bp_to_CR933682_5end |
EntrezGene: | PEG3 |
HGNC: | 8826 |
UniProt: | Q9GZU2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 3.81e-21 | 2 |
chorionic membrane mesenchymal stem cell | 1.60e-14 | 3 |
keratinocyte | 2.74e-09 | 5 |
stratified squamous epithelial cell | 5.92e-08 | 6 |
keratin accumulating cell | 5.92e-08 | 6 |
stratified epithelial cell | 5.92e-08 | 6 |
keratinizing barrier epithelial cell | 5.92e-08 | 6 |
epithelial fate stem cell | 5.92e-08 | 6 |
stratified epithelial stem cell | 5.92e-08 | 6 |
surface ectodermal cell | 5.92e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
middle temporal gyrus | 3.11e-21 | 2 |
egg chorion | 1.60e-14 | 3 |
occipital lobe | 3.49e-09 | 5 |
neocortex | 1.42e-08 | 20 |
gyrus | 5.54e-08 | 6 |
regional part of cerebral cortex | 6.52e-08 | 22 |
cerebral cortex | 4.15e-07 | 25 |
pallium | 4.15e-07 | 25 |
temporal lobe | 5.08e-07 | 6 |
chorion | 5.70e-07 | 7 |