FFCP PHASE1:Hg19::chr1:154306439..154306461,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:154306439..154306461,+ | |||
|coexpression_cluster_id=C164 | |coexpression_cluster_id=C164 | ||
|description=CAGE_peak_at_chr1:154306439..154306461,+ | |description=CAGE_peak_at_chr1:154306439..154306461,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000039!9.53e-13!7;CL:0000586!9.53e-13!7;CL:0000223!1.51e-09!59;CL:0002178!7.01e-08!3;CL:0002580!1.93e-07!3 | |ontology_enrichment_celltype=CL:0000039!9.53e-13!7;CL:0000586!9.53e-13!7;CL:0000223!1.51e-09!59;CL:0002178!7.01e-08!3;CL:0002580!1.93e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000039;3.91e-38;7!CL:0000586;3.91e-38;7!CL:0000138;4.81e-12;6!CL:0000153;2.46e-08;9!CL:0000447;2.46e-08;9!CL:0002178;5.80e-07;3!CL:0002567;8.86e-07;3 | |ontology_enrichment_celltype_v019=CL:0000039;3.91e-38;7!CL:0000586;3.91e-38;7!CL:0000138;4.81e-12;6!CL:0000153;2.46e-08;9!CL:0000447;2.46e-08;9!CL:0002178;5.80e-07;3!CL:0002567;8.86e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000039,2.31e-38,7;CL:0000586,2.31e-38,7;CL:0000058,4.81e-12,6;CL:0000138,4.81e-12,6;CL:0000153,2.46e-08,9;CL:0000447,2.46e-08,9;CL:0002178,5.80e-07,3;CL:0002567,9.64e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.17e-15;10!UBERON:0005564;1.17e-15;10 | |ontology_enrichment_development_v019=UBERON:0009117;1.17e-15;10!UBERON:0005564;1.17e-15;10 | ||
|ontology_enrichment_disease=DOID:0050687!1.23e-13!143;DOID:305!4.49e-12!106;DOID:162!1.59e-08!235;DOID:14566!4.05e-08!239 | |ontology_enrichment_disease=DOID:0050687!1.23e-13!143;DOID:305!4.49e-12!106;DOID:162!1.59e-08!235;DOID:14566!4.05e-08!239 | ||
|ontology_enrichment_disease_v019=DOID:3095;2.01e-12;22!DOID:2994;2.01e-12;22!DOID:3493;7.98e-10;2 | |ontology_enrichment_disease_v019=DOID:3095;2.01e-12;22!DOID:2994;2.01e-12;22!DOID:3493;7.98e-10;2 | ||
|ontology_enrichment_disease_v019_2=DOID:3095,1.71e-12,22;DOID:2994,1.71e-12,22;DOID:3493,7.98e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0000310!1.89e-07!10 | |ontology_enrichment_uberon=UBERON:0000310!1.89e-07!10 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.13e-19;8!UBERON:0003135;2.69e-14;11!UBERON:0000991;9.08e-08;21!UBERON:0003101;1.94e-07;22!UBERON:0000079;1.94e-07;22 | |ontology_enrichment_uberon_v019=UBERON:0000473;2.13e-19;8!UBERON:0003135;2.69e-14;11!UBERON:0000991;9.08e-08;21!UBERON:0003101;1.94e-07;22!UBERON:0000079;1.94e-07;22 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.76e-19,8;UBERON:0003135,2.35e-14,11;UBERON:0000991,8.47e-08,21;UBERON:0009196,8.47e-08,21;UBERON:0009117,8.47e-08,21;UBERON:0005564,8.47e-08,21;UBERON:0004176,1.81e-07,22;UBERON:0003101,1.81e-07,22;UBERON:0000079,1.81e-07,22 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,0,0.446961094427288,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,2.50668955317945,1.15877215168659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717558542755448,0,0,0,0,0.515281080091258,0.37223371266318,0.168776332241266,0.0974370051611986,0,0,0,0,0.201504196455281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,1.1240175325762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,1.14596527667483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496215615637554,0.306923946576125,0.280660094433074,0.256278298511402,0,0.160853921143607,0,0,0,0,0,0,0.120859449591622,0,0.0920809889358963,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0.386682873168488,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658589785919804,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0.520855522170466,0,0,0.1137934482855,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0,1.61394733071642,0.807818799687949,0.434589487688032,0,0,0,0,0,0,0,0,0,0,0,0,0,0.706765357169704,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0,0,0,0,0.277349346026277,0,0.293977192243133,0,0,0,0,1.24251839046515,0.0821154570532092,0,0,0,0,0,0,0.391102765469606,0,0,0.19980960958213,0.72045208577053,0.114536596165916,0,0.432164393964449,0,0.707082103850386,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,1.16495949527454,0.0787831823072236,0.164831716762333,0.471824806979294,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0.606596470166591,0.856396000634902,0,0.468334905806882,0,0.149254802886874,0.233713309847224,0,0,0,0,0.228840068396924,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03018711554838,0.336749488765919,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.845248493434508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0.294443155503077,0,0,0,0,0,0.994581110581374,0,0,0,0.523813388962845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280272163313789,0,0,0,0,0.316027223465453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.4039247632158,0,0,0,0,0,0,0,0,0.5647304101948,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.44773191380756,1.87052183685892,3.30821638325442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0.538951212639521,0,0,0,0,0,0 | |phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,0,0.446961094427288,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,2.50668955317945,1.15877215168659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717558542755448,0,0,0,0,0.515281080091258,0.37223371266318,0.168776332241266,0.0974370051611986,0,0,0,0,0.201504196455281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,1.1240175325762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,1.14596527667483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496215615637554,0.306923946576125,0.280660094433074,0.256278298511402,0,0.160853921143607,0,0,0,0,0,0,0.120859449591622,0,0.0920809889358963,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0.386682873168488,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658589785919804,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0.520855522170466,0,0,0.1137934482855,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0,1.61394733071642,0.807818799687949,0.434589487688032,0,0,0,0,0,0,0,0,0,0,0,0,0,0.706765357169704,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0,0,0,0,0.277349346026277,0,0.293977192243133,0,0,0,0,1.24251839046515,0.0821154570532092,0,0,0,0,0,0,0.391102765469606,0,0,0.19980960958213,0.72045208577053,0.114536596165916,0,0.432164393964449,0,0.707082103850386,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,1.16495949527454,0.0787831823072236,0.164831716762333,0.471824806979294,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0.606596470166591,0.856396000634902,0,0.468334905806882,0,0.149254802886874,0.233713309847224,0,0,0,0,0.228840068396924,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03018711554838,0.336749488765919,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.845248493434508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0.294443155503077,0,0,0,0,0,0.994581110581374,0,0,0,0.523813388962845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280272163313789,0,0,0,0,0.316027223465453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.4039247632158,0,0,0,0,0,0,0,0,0.5647304101948,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.44773191380756,1.87052183685892,3.30821638325442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0.538951212639521,0,0,0,0,0,0 | ||
|short_description=p@chr1:154306439..154306461,+ | |short_description=p@chr1:154306439..154306461,+ | ||
}} | }} |
Latest revision as of 21:59, 27 July 2015
Short description: | p@chr1:154306439..154306461, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:154306439..154306461, + |
Coexpression cluster: | C164_signet_corpus_optic_mucinous_substantia_salivary_choriocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 2.31e-38 | 7 |
germ cell | 2.31e-38 | 7 |
chondroblast | 4.81e-12 | 6 |
chondrocyte | 4.81e-12 | 6 |
GAG secreting cell | 2.46e-08 | 9 |
carbohydrate secreting cell | 2.46e-08 | 9 |
epithelial cell of stomach | 5.80e-07 | 3 |
light melanocyte | 9.64e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
testis | 1.76e-19 | 8 |
male reproductive organ | 2.35e-14 | 11 |
gonad | 8.47e-08 | 21 |
indifferent external genitalia | 8.47e-08 | 21 |
indifferent gonad | 8.47e-08 | 21 |
gonad primordium | 8.47e-08 | 21 |
external genitalia | 1.81e-07 | 22 |
male organism | 1.81e-07 | 22 |
male reproductive system | 1.81e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.71e-12 | 22 |
germ cell cancer | 1.71e-12 | 22 |
signet ring cell adenocarcinoma | 7.98e-10 | 2 |