FFCP PHASE1:Hg19::chr21:42539701..42539716,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr21:42539701..42539716,+
|short_description=p4@BACE2
|description=CAGE_peak_4_at_BACE2_5end
|association_with_transcript=-11bp_to_ENST00000328735,ENST00000330...") |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=25825 | |EntrezGene=25825 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=934 | |HGNC=934 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y5Z0 | |UniProt=Q9Y5Z0 | ||
|association_with_transcript=-11bp_to_ENST00000328735,ENST00000330333,ENST00000347667,NM_012105,NM_138991,NM_138992,uc002yyw.2,uc002yyx.2,uc002yyy.2_5end | |||
|cluster_id=chr21:42539701..42539716,+ | |||
|description=CAGE_peak_4_at_BACE2_5end | |||
|id=chr21:42539701..42539716,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.51e-12!180;CL:0000222!7.32e-12!119;CL:0000220!1.46e-08!246;CL:0002321!2.37e-08!248;CL:0000183!2.14e-07!59;CL:0000057!5.76e-07!75 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.21e-09,121;CL:0002321,1.91e-07,250 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!1.36e-11!118;UBERON:0004872!3.64e-11!84;UBERON:0002049!1.76e-10!79;UBERON:0007798!1.76e-10!79;UBERON:0000477!4.77e-10!286;UBERON:0004535!8.58e-10!110;UBERON:0001009!1.25e-09!113;UBERON:0000055!2.50e-09!69;UBERON:0000481!5.13e-09!347;UBERON:0001981!1.21e-08!60;UBERON:0007500!1.21e-08!60;UBERON:0004537!1.21e-08!60;UBERON:0006965!1.21e-08!60;UBERON:0000119!1.56e-08!312;UBERON:0003103!1.67e-08!69;UBERON:0000483!3.11e-08!309;UBERON:0002100!1.93e-07!216;UBERON:0005256!2.09e-07!143;UBERON:0004573!2.18e-07!33;UBERON:0004571!2.18e-07!33;UBERON:0004111!2.72e-07!241;UBERON:0000468!4.56e-07!659;UBERON:0001637!5.09e-07!42;UBERON:0003509!5.09e-07!42;UBERON:0004572!5.09e-07!42;UBERON:0000475!6.30e-07!365;UBERON:0003104!8.11e-07!238;UBERON:0009142!8.11e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;6.03e-08;33!UBERON:0004571;6.03e-08;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,1.49e-11,117;UBERON:0004872,5.83e-10,83;UBERON:0002049,2.67e-09,78;UBERON:0007798,2.67e-09,78;UBERON:0004573,1.87e-08,33;UBERON:0004571,1.87e-08,33;UBERON:0000055,2.02e-08,68;UBERON:0007500,3.58e-08,59;UBERON:0001981,3.58e-08,59;UBERON:0004537,3.58e-08,59;UBERON:0006965,3.58e-08,59;UBERON:0004535,6.79e-08,109;UBERON:0001009,1.45e-07,112;UBERON:0003103,1.49e-07,68;UBERON:0001637,2.82e-07,42;UBERON:0003509,2.82e-07,42;UBERON:0004572,2.82e-07,42;UBERON:0003104,2.94e-07,160;UBERON:0009142,2.94e-07,160 | |||
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|phase1_expression=2.36181893051724,1.92690471501885,2.67813367782345,3.00219895059391,2.68176656656373,1.74467704820074,0,0,1.04474251279935,0.737201809504527,1.39560233594486,2.18441372130172,4.22027165165526,2.84662611808107,3.31397375727916,1.34465029290355,3.01347264011988,2.19093027116212,1.95173119516203,2.70866327768933,2.24400760368678,3.76145665773705,0.85870796139317,1.50561867580173,0.753255837568817,0,0,0,1.18009283054671,0,0.309632246632152,0,0.90361775633475,1.10926203050036,0,0,0.587200878669695,0,0,0,0,0.32389366601898,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0.546138611262131,0,0,1.20118796110804,1.72425731986345,0.661044872784862,0,0.569212969109448,0,1.52909291250092,1.32171328579026,0,0.790152254325231,0,0,0,0,0,0,0,0.779873198196215,0,0,0,0,0.260118695119756,0.164437904603676,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0.127986611154418,0,0,0,0.201606743224732,0,0,4.87613732627923,1.34140171940727,1.02290049474824,0.722878304769133,3.00802746381534,3.0417768981773,3.1811437882044,2.43317435151318,0.945348171640679,1.99556457716308,2.28370442802128,2.03017567021455,1.45718115317017,1.85392221392215,0,0.174129737299267,0.132957960518865,0,0,0,1.39133685156694,0,3.47140501607594,1.69592382577203,1.67799774483962,0.550236083880135,0.417989933073621,1.55050055501597,0.71153252537342,0.66944122552934,2.41697590265488,1.52054421143703,0.488124115096339,0.367663080345869,3.24056779152704,1.25019619597712,0.898117490504679,0.450445921933289,3.06633274931766,0.949265659568129,1.28241220751285,0,0,2.18047026071267,1.98788780678127,1.2663051166458,1.32409180813219,8.3182620017156,2.83734705758686,0.560677600142307,4.2699598291882,2.4666754841716,1.55605517699883,1.48181739276657,0.490385709340376,2.57307626996383,0,0.937285727335186,0,1.1409436430889,0.448346041655403,0.352303495931295,0.323745888736263,0.280901613404497,0.408308342509787,1.22834317311768,0.929932030581889,3.56400857184616,1.97813543422845,0.910161361938026,6.46756327634615,1.0100166837244,0.875829639103749,1.10825646193673,0,0.612975591598039,2.40380894250555,1.24775401476023,1.4351170855109,1.92201649936711,1.27159140695737,1.80054657650641,1.64884046781502,1.03056216018252,2.04728541964749,1.18143432568886,2.43592512902997,1.26216887122057,1.38074847963449,1.61646056818812,2.84007674013291,0.302256294682921,0.508681776931463,2.31913023795956,0.272746120590835,1.72082757233402,0.365921118388786,0.265059536642971,0.464775771478074,0.207322110030741,0,0,1.56449532329816,1.92972281457866,4.14404764057442,0.928735856063958,0,1.18306800039844,1.01150814046861,0.964044119533928,2.09558548191549,2.39667388501647,0.949082476444386,1.34831308160164,1.96221465125346,1.15424147083917,2.21446636387394,0,2.8810180793198,4.41026134156626,1.26755034821831,0,0,0,0.245976877086227,1.20097467208968,1.53650399572076,2.24803506515239,0.603173834469785,1.85176890317059,0.325808305310325,2.07986957055916,0,2.08674728955138,3.87448690978212,1.58803092537181,2.77791307545966,2.09279567458058,0,0,0,0.234004265139238,0.445893486866185,0,1.34385702559088,0.141775097242386,1.25381931783988,0.871901815541886,1.15014803749563,0,2.55340458638356,3.7319060797339,6.62951785718023,5.0496973370552,1.52394946301206,6.11181480893244,8.20522130470329,0,1.64523988325318,2.40274446275134,2.28661146104463,1.79409734952577,0.87192013766656,1.39342743059805,2.45616259939778,0,0.845302752556,1.59562869950922,0,1.28603687131071,1.41849132023278,1.5985330740966,0.714889968290738,3.7983512377401,1.64648067356154,0.977208552881205,0.355391948742546,0,3.31583314765545,2.61460037580088,2.69927076191554,1.2162378064119,0.502257091432126,0,0.718874566474748,2.29723871668228,1.42636905040718,1.15825045334063,1.43833425785268,1.25342674267927,0,0,0,0,1.27047312111232,0,0.773288812777695,0.502548796003046,0,0,0,0,2.33113834266366,2.00068208423871,1.62759014219841,2.28767947683888,1.96271887676878,2.05013139544115,1.28855556491985,3.61135319673263,6.82222512167955,2.0694614258501,0,2.02806085395873,1.21637060255316,3.91602314925481,4.46086450954113,0,0.215714200818617,0.106727557803444,0.606255142892519,3.32870879020994,0,3.96972492510043,2.14846762603287,1.40330047216537,3.07533958213682,1.02341449813341,4.3430558708774,2.96836132889982,0.925258162815933,1.42049380250502,0.9033987161519,0.519254429183621,1.39452454151951,0,2.20557117333613,2.4861867012692,0.34444334449382,0.182091168006717,0.393373244878272,5.41439535488894,1.38627606787947,0.784349769176855,2.92278449306521,2.00548094896464,3.4120015221269,2.38131187387122,0.863663664408557,3.08454505380579,1.62567862526312,4.51520796469368,3.82314409567557,2.49322802678617,1.11937377361089,0.438519753291869,0,2.56450125116389,2.29610251989794,1.30151357865721,0.721287081534056,0,0,2.29706215198469,0,1.6068392984416,1.45006077438183,0.462145851343933,0.767518373630648,0.827019434907183,1.28904293841928,0.870100163485371,0.596586391912706,0.7122562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| ||
|short_description=p4@BACE2 | |||
}} | }} |
Latest revision as of 12:17, 18 September 2015
Short description: | p4@BACE2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_BACE2_5end |
Coexpression cluster: | NA |
Association with transcript: | -11bp_to_ENST00000328735, ENST00000330333, ENST00000347667, NM_012105, NM_138991, NM_138992, uc002yyw.2, uc002yyx.2, uc002yyy.2_5end |
EntrezGene: | BACE2 |
HGNC: | 934 |
UniProt: | Q9Y5Z0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.21e-09 | 121 |
embryonic cell | 1.91e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
epithelial tube | 1.49e-11 | 117 |
splanchnic layer of lateral plate mesoderm | 5.83e-10 | 83 |
vasculature | 2.67e-09 | 78 |
vascular system | 2.67e-09 | 78 |
systemic artery | 1.87e-08 | 33 |
systemic arterial system | 1.87e-08 | 33 |
vessel | 2.02e-08 | 68 |
epithelial tube open at both ends | 3.58e-08 | 59 |
blood vessel | 3.58e-08 | 59 |
blood vasculature | 3.58e-08 | 59 |
vascular cord | 3.58e-08 | 59 |
cardiovascular system | 6.79e-08 | 109 |
circulatory system | 1.45e-07 | 112 |
compound organ | 1.49e-07 | 68 |
artery | 2.82e-07 | 42 |
arterial blood vessel | 2.82e-07 | 42 |
arterial system | 2.82e-07 | 42 |
mesenchyme | 2.94e-07 | 160 |
entire embryonic mesenchyme | 2.94e-07 | 160 |