FFCP PHASE1:Hg19::chr2:241976651..241976658,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr2:241976651..241976658,+
|short_description=p19@SNED1
|description=CAGE_peak_19_at_SNED1_5end
|association_with_transcript=-94bp_to_ENST00000431690_5end
|En...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=25992 | |EntrezGene=25992 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24696 | |HGNC=24696 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-94bp_to_ENST00000431690_5end | |||
|cluster_id=chr2:241976651..241976658,+ | |||
|coexpression_cluster_id=C4211 | |||
|description=CAGE_peak_19_at_SNED1_5end | |||
|id=chr2:241976651..241976658,+ | |||
|ontology_enrichment_celltype=CL:0000542!2.00e-15!53;CL:0000051!2.00e-15!53;CL:0000898!5.13e-14!3;CL:0000838!1.46e-13!52;CL:0000945!1.62e-13!24;CL:0000826!1.62e-13!24;CL:0000236!3.60e-11!14;CL:0000785!4.54e-10!2;CL:0000955!4.54e-10!2;CL:0000818!4.54e-10!2;CL:0000954!4.54e-10!2;CL:0000816!4.54e-10!2;CL:0000815!5.67e-10!2;CL:0000792!5.67e-10!2;CL:0002677!5.67e-10!2;CL:0002087!9.69e-08!119;CL:0000624!3.21e-07!6;CL:0000080!3.97e-07!6;CL:0000817!5.66e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000785;1.69e-21;1!CL:0000819;1.69e-21;1!CL:0000236;1.54e-14;13!CL:0000945;1.07e-13;24!CL:0000542;1.43e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000819,1.53e-21,1;CL:0000945,1.04e-13,24;CL:0000826,1.04e-13,24;CL:0000236,1.67e-13,14;CL:0000785,1.82e-11,2;CL:0000955,1.82e-11,2;CL:0000818,1.82e-11,2;CL:0000954,1.82e-11,2;CL:0000816,1.82e-11,2;CL:0000542,1.58e-09,53;CL:0000051,1.58e-09,53;CL:0000817,4.52e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000954;1.92e-11;2!CL:0000051;1.43e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060073;1.69e-21;1!DOID:8675;1.69e-21;1!DOID:12603;4.66e-21;1!DOID:0060058;5.80e-09;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060073,1.53e-21,1;DOID:8675,1.53e-21,1;DOID:12603,6.31e-21,1;DOID:0060058,4.94e-09,10 | |||
|ontology_enrichment_uberon=UBERON:0002370!1.58e-10!4;UBERON:0005058!1.58e-10!4;UBERON:0009113!1.58e-10!4;UBERON:0003295!1.58e-10!4;UBERON:0005562!1.58e-10!4;UBERON:0004177!5.26e-10!7;UBERON:0003351!3.73e-07!6;UBERON:0003408!4.12e-07!10;UBERON:0001042!5.00e-07!10;UBERON:0009145!5.00e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;3.18e-11;2!UBERON:0005058;3.18e-11;2!UBERON:0009113;3.18e-11;2 | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p19@SNED1 | |||
}} | }} |
Latest revision as of 09:25, 16 September 2015
Short description: | p19@SNED1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_SNED1_5end |
Coexpression cluster: | C4211_diffuse_CD4_lymphoma_acute_thymus_CD19_appendix |
Association with transcript: | -94bp_to_ENST00000431690_5end |
EntrezGene: | SNED1 |
HGNC: | 24696 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B-1 B cell | 1.53e-21 | 1 |
lymphocyte of B lineage | 1.04e-13 | 24 |
pro-B cell | 1.04e-13 | 24 |
B cell | 1.67e-13 | 14 |
mature B cell | 1.82e-11 | 2 |
pre-B-II cell | 1.82e-11 | 2 |
transitional stage B cell | 1.82e-11 | 2 |
small pre-B-II cell | 1.82e-11 | 2 |
immature B cell | 1.82e-11 | 2 |
lymphocyte | 1.58e-09 | 53 |
common lymphoid progenitor | 1.58e-09 | 53 |
precursor B cell | 4.52e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
lymphatic system cancer | 1.53e-21 | 1 |
lymphosarcoma | 1.53e-21 | 1 |
acute leukemia | 6.31e-21 | 1 |
lymphoma | 4.94e-09 | 10 |