FFCP PHASE1:Hg19::chr4:129207950..129207962,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:129207950..129207962,-
|short_description=p11@PGRMC2
|description=CAGE_peak_11_at_PGRMC2_5end
|association_with_transcript=-8bp_to_ENST00000503588_5end
|E...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10424 | |EntrezGene=10424 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16089 | |HGNC=16089 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-8bp_to_ENST00000503588_5end | |||
|cluster_id=chr4:129207950..129207962,- | |||
|description=CAGE_peak_11_at_PGRMC2_5end | |||
|id=chr4:129207950..129207962,- | |||
|ontology_enrichment_celltype=CL:0000136!3.08e-09!15;CL:0002334!3.45e-07!12;CL:0000057!9.43e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0000136;1.03e-36;13!CL:0002579;2.28e-31;3!CL:0002615;1.19e-14;3!CL:0002334;5.46e-14;12!CL:0000511;1.30e-11;1!CL:0002625;1.30e-11;1!CL:0000216;1.30e-11;1!CL:0002616;3.28e-11;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,1.41e-31,15;CL:0002579,2.17e-31,3;CL:0002615,1.23e-14,3;CL:0002334,5.37e-14,12;CL:0000511,1.31e-11,1;CL:0002625,1.31e-11,1;CL:0000216,1.31e-11,1;CL:0002616,2.42e-11,1;CL:0000057,1.60e-07,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;7.85e-09;5!DOID:450;7.85e-09;5!DOID:66;7.85e-09;5!DOID:423;7.85e-09;5!DOID:0080000;7.85e-09;5!DOID:11722;7.85e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,7.55e-09,5;DOID:450,7.55e-09,5;DOID:66,7.55e-09,5;DOID:423,7.55e-09,5;DOID:0080000,7.55e-09,5;DOID:11722,7.55e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0003688!2.23e-10!6;UBERON:0002358!2.23e-10!6;UBERON:0003684!2.23e-10!6;UBERON:0001178!2.23e-10!6;UBERON:0001737!4.90e-09!9;UBERON:0004457!9.74e-08!12;UBERON:0000042!9.74e-08!12;UBERON:0004923!6.16e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.60e-42;6!UBERON:0002358;1.60e-42;6!UBERON:0003684;1.60e-42;6!UBERON:0001178;1.60e-42;6!UBERON:0004457;2.27e-28;9!UBERON:0000042;2.27e-28;9!UBERON:0001136;1.30e-11;1!UBERON:0001343;1.30e-11;1!UBERON:0004910;1.30e-11;1!UBERON:0004813;1.30e-11;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.60e-42,6;UBERON:0002358,1.60e-42,6;UBERON:0003684,1.60e-42,6;UBERON:0001178,1.60e-42,6;UBERON:0004457,2.82e-21,12;UBERON:0000042,2.82e-21,12;UBERON:0001136,1.31e-11,1;UBERON:0001343,1.31e-11,1;UBERON:0004910,1.31e-11,1;UBERON:0005154,1.31e-11,1;UBERON:0005295,1.31e-11,1;UBERON:0004813,1.31e-11,1;UBERON:0005297,1.31e-11,1;UBERON:0005294,1.31e-11,1;UBERON:0010141,1.31e-11,1;UBERON:0005891,1.31e-11,1;UBERON:0002323,1.32e-07,46;UBERON:0004458,4.12e-07,49 | |||
|phase1_expression=1.45342703416445,0.428201047781966,4.51054093107108,2.00146596706261,0.893922188854576,1.74467704820074,0,0,0,0.245733936501509,0,0,0.263766978228454,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0.189069634328136,0.221729397462564,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0.402829317109147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.759783069987479,0.529636723252875,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0.300476117813194,0.113432183160021,0,1.06778694409284,1.90738711043606,0,0.824420233907511,0,0.558350568994769,0,0.68205903612839,0,1.56484827691909,0.323292113637624,0,0.403008392910561,0.508681776931463,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,0.505754070234305,0.964044119533928,0.330881918197182,0.217879444092406,0.949082476444386,0.134831308160164,0.588664395376038,0,0,0,0,0,0,0,0.590789906681404,0,0,0.171567810298526,0,0,0,0,0,0,0,0.115930404975077,0.234817388471643,0.144366447761074,0,0,0,0,0,0,0,0,0.503946384596579,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387815147273333,0,0,0.26593811658487,0,0,0,0,1.85871391755592,0,0,0,0.710783897485092,0,0,0,0.199945982364114,0,0,0,0.239624855491583,0,0,0.579125226670317,0,0.179060963239896,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0.713715955188647,0.946214490203608,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,6.94701861892575,0.920771839728375,0.841980283299221,4.61300937320523,3.07024349440022,3.21707842287215,0,0,0.177561725313127,0.164254312027618,0,0,0,0,0,0.574072240823034,0,0.131124414959424,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0.103041011647722,0,0,0,0,3.21367859688319,0,0,0,0.137836572484531,0,0,0,0.0890320356467374,0,0,0,0,0.929691098594572,0.31481234683064,0,0,0,0,0,0.143124886741991,0,0,0.38126038784765,0,0.42793898803392,0,0,0.359744915166629,0,0,0,0,0,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0.438450885253763,0,0,0,0,0,0,0.0982490410131212,0,0,0.633322905892992,0.329294892959902,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0.439524537815682,0,0,0,0,0.593929361665277,0,0,0,0,0,0,0,0,0.251932747854276,0.20453736500431,0,0.933118762985422,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0.113942055847001,0,0.0897576444097721,0.108647371922008,0,0.274792780205587,0.533034776018635,0,0,0,0,0,0,0,0.158936578980379,0.210998064528027,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313932918407225,0,0,0,0,0,0,0,0,0,0.0730893170861856,0,0,0.353024506766001,0,0,0,0,0,0.0801588202515337,0,0,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0.229160424011684,0,0,0,0,0.0671834724867263,0.360299883542404,0,0,0,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72844298240254,0,1.19730191562487,0,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0,1.08803560673895,1.0027595760908,1.53172788381731,0.655745261419609,0,0,0,0,0,0,0,0.276697269872462,0,0,0,0,0,0,0.149254802886874,0.233713309847224,0,0.189403005275089,0.251567901752575,1.77962244319307,0.457680136793847,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0.244736704506468,0.537266523244462,0.308801447160972,0,0,0,0.337884881306145,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0,0,0.954013051960256,0,0,0.352675943690684,0.6124909547064,0,0,0,0,0,0,0,0,0,0,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.548257766857182,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.924351257262837,1.29787968637137,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0.0814032686109745,0.426909383510862,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=1.45342703416445,0.428201047781966,4.51054093107108,2.00146596706261,0.893922188854576,1.74467704820074,0,0,0,0.245733936501509,0,0,0.263766978228454,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0.189069634328136,0.221729397462564,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0.402829317109147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.759783069987479,0.529636723252875,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0.300476117813194,0.113432183160021,0,1.06778694409284,1.90738711043606,0,0.824420233907511,0,0.558350568994769,0,0.68205903612839,0,1.56484827691909,0.323292113637624,0,0.403008392910561,0.508681776931463,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,0.505754070234305,0.964044119533928,0.330881918197182,0.217879444092406,0.949082476444386,0.134831308160164,0.588664395376038,0,0,0,0,0,0,0,0.590789906681404,0,0,0.171567810298526,0,0,0,0,0,0,0,0.115930404975077,0.234817388471643,0.144366447761074,0,0,0,0,0,0,0,0,0.503946384596579,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387815147273333,0,0,0.26593811658487,0,0,0,0,1.85871391755592,0,0,0,0.710783897485092,0,0,0,0.199945982364114,0,0,0,0.239624855491583,0,0,0.579125226670317,0,0.179060963239896,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0.713715955188647,0.946214490203608,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,6.94701861892575,0.920771839728375,0.841980283299221,4.61300937320523,3.07024349440022,3.21707842287215,0,0,0.177561725313127,0.164254312027618,0,0,0,0,0,0.574072240823034,0,0.131124414959424,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0.103041011647722,0,0,0,0,3.21367859688319,0,0,0,0.137836572484531,0,0,0,0.0890320356467374,0,0,0,0,0.929691098594572,0.31481234683064,0,0,0,0,0,0.143124886741991,0,0,0.38126038784765,0,0.42793898803392,0,0,0.359744915166629,0,0,0,0,0,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0.438450885253763,0,0,0,0,0,0,0.0982490410131212,0,0,0.633322905892992,0.329294892959902,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0.439524537815682,0,0,0,0,0.593929361665277,0,0,0,0,0,0,0,0,0.251932747854276,0.20453736500431,0,0.933118762985422,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0.113942055847001,0,0.0897576444097721,0.108647371922008,0,0.274792780205587,0.533034776018635,0,0,0,0,0,0,0,0.158936578980379,0.210998064528027,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313932918407225,0,0,0,0,0,0,0,0,0,0.0730893170861856,0,0,0.353024506766001,0,0,0,0,0,0.0801588202515337,0,0,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0.229160424011684,0,0,0,0,0.0671834724867263,0.360299883542404,0,0,0,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72844298240254,0,1.19730191562487,0,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0,1.08803560673895,1.0027595760908,1.53172788381731,0.655745261419609,0,0,0,0,0,0,0,0.276697269872462,0,0,0,0,0,0,0.149254802886874,0.233713309847224,0,0.189403005275089,0.251567901752575,1.77962244319307,0.457680136793847,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0.244736704506468,0.537266523244462,0.308801447160972,0,0,0,0.337884881306145,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0,0,0.954013051960256,0,0,0.352675943690684,0.6124909547064,0,0,0,0,0,0,0,0,0,0,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.548257766857182,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.924351257262837,1.29787968637137,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0.0814032686109745,0.426909383510862,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p11@PGRMC2 | |||
}} | }} |
Latest revision as of 02:57, 25 September 2015
Short description: | p11@PGRMC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_PGRMC2_5end |
Coexpression cluster: | NA |
Association with transcript: | -8bp_to_ENST00000503588_5end |
EntrezGene: | PGRMC2 |
HGNC: | 16089 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 1.41e-31 | 15 |
omentum preadipocyte | 2.17e-31 | 3 |
adipocyte of omentum tissue | 1.23e-14 | 3 |
preadipocyte | 5.37e-14 | 12 |
androgen binding protein secreting cell | 1.31e-11 | 1 |
seminiferous tubule epithelial cell | 1.31e-11 | 1 |
Sertoli cell | 1.31e-11 | 1 |
perirenal adipocyte cell | 2.42e-11 | 1 |
fibroblast | 1.60e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
omentum | 1.60e-42 | 6 |
peritoneum | 1.60e-42 | 6 |
abdominal cavity | 1.60e-42 | 6 |
visceral peritoneum | 1.60e-42 | 6 |
cavity lining | 2.82e-21 | 12 |
serous membrane | 2.82e-21 | 12 |
mesothelium | 1.31e-11 | 1 |
seminiferous tubule of testis | 1.31e-11 | 1 |
epithelium of male gonad | 1.31e-11 | 1 |
epithelial cord | 1.31e-11 | 1 |
sex cord | 1.31e-11 | 1 |
seminiferous tubule epithelium | 1.31e-11 | 1 |
testis sex cord | 1.31e-11 | 1 |
genital ridge | 1.31e-11 | 1 |
primitive sex cord of indifferent gonad | 1.31e-11 | 1 |
coelomic epithelium | 1.31e-11 | 1 |
body cavity | 1.32e-07 | 46 |
body cavity or lining | 4.12e-07 | 49 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 7.55e-09 | 5 |
myotonic disease | 7.55e-09 | 5 |
muscle tissue disease | 7.55e-09 | 5 |
myopathy | 7.55e-09 | 5 |
muscular disease | 7.55e-09 | 5 |
myotonic dystrophy | 7.55e-09 | 5 |