FFCP PHASE1:Hg19::chr4:86684588..86684603,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:86684588..86684603,-
|short_description=p@chr4:86684588..86684603,-
|description=CAGE_peak_at_chr4:86684588..86684603,-
|association_with_transcript=NA
|E...") |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr4:86684588..86684603,- | |||
|description=CAGE_peak_at_chr4:86684588..86684603,- | |||
|id=chr4:86684588..86684603,- | |||
|ontology_enrichment_celltype=CL:0002139!6.13e-49!24;CL:0000071!4.14e-47!18;CL:0002546!4.14e-47!18;CL:0000115!4.59e-38!35;CL:0002543!2.76e-30!6;CL:0002078!9.62e-30!44;CL:1000413!7.07e-29!9;CL:0002618!1.09e-22!3;CL:0000213!2.34e-22!57;CL:0000215!2.34e-22!57;CL:0002544!6.78e-20!6;CL:0000222!1.49e-12!119;CL:0000076!2.59e-12!62 | |||
|ontology_enrichment_celltype_v019=CL:0002618;4.27e-34;3!CL:0000071;3.88e-23;18!CL:0002543;7.67e-18;6!CL:0002544;9.07e-18;6!CL:0002139;1.03e-17;24!CL:1000413;2.45e-12;9!CL:0002078;3.82e-10;45!CL:0000115;1.58e-09;36!CL:0000076;3.54e-08;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0002618,4.27e-34,3;CL:0000071,3.88e-23,18;CL:0002546,3.88e-23,18;CL:0002543,7.67e-18,6;CL:0002544,9.07e-18,6;CL:0002139,1.03e-17,24;CL:1000413,2.45e-12,9;CL:0000115,2.91e-12,36;CL:0002078,4.55e-10,45;CL:0000213,4.33e-08,58;CL:0000215,4.33e-08,58;CL:0000076,1.52e-07,63 | |||
|ontology_enrichment_development_v019=CL:0002546;3.88e-23;18 | |||
|ontology_enrichment_disease=DOID:2513!1.84e-08!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!4.14e-47!18;UBERON:0004638!4.14e-47!18;UBERON:0004852!4.14e-47!18;UBERON:0000487!3.31e-38!22;UBERON:0006914!2.14e-33!25;UBERON:0003915!7.07e-29!9;UBERON:0004700!7.07e-29!9;UBERON:0001917!7.07e-29!9;UBERON:0000055!7.31e-24!69;UBERON:0001981!4.83e-21!60;UBERON:0007500!4.83e-21!60;UBERON:0004537!4.83e-21!60;UBERON:0006965!4.83e-21!60;UBERON:0002049!1.88e-20!79;UBERON:0007798!1.88e-20!79;UBERON:0001638!3.66e-20!9;UBERON:0003920!3.66e-20!9;UBERON:0004582!3.66e-20!9;UBERON:0004872!2.86e-14!84;UBERON:0002066!7.56e-14!5;UBERON:0004535!8.12e-14!110;UBERON:0001009!2.28e-13!113;UBERON:0003914!1.21e-12!118;UBERON:0001637!1.33e-12!42;UBERON:0003509!1.33e-12!42;UBERON:0004572!1.33e-12!42;UBERON:0004573!5.61e-10!33;UBERON:0004571!5.61e-10!33;UBERON:0000947!1.71e-08!21;UBERON:0010191!1.71e-08!21;UBERON:0004111!3.73e-08!241;UBERON:0000490!1.20e-07!138;UBERON:0000025!1.98e-07!194;UBERON:0000477!3.94e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;3.88e-23;18!UBERON:0001986;3.88e-23;18!UBERON:0004852;3.88e-23;18!UBERON:0002066;4.21e-21;5!UBERON:0000487;3.41e-19;22!UBERON:0006914;4.64e-17;25!UBERON:0000490;1.84e-13;33!UBERON:0001638;2.19e-12;9!UBERON:0010260;2.19e-12;9!UBERON:0003920;2.19e-12;9!UBERON:0004582;2.19e-12;9!UBERON:0003915;2.45e-12;9!UBERON:0004700;2.45e-12;9!UBERON:0001917;2.45e-12;9!UBERON:0007500;1.47e-07;56!UBERON:0001981;1.47e-07;56!UBERON:0004537;1.47e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,3.88e-23,18;UBERON:0001986,3.88e-23,18;UBERON:0004852,3.88e-23,18;UBERON:0002066,4.21e-21,5;UBERON:0000487,3.41e-19,22;UBERON:0006914,4.64e-17,25;UBERON:0001638,2.19e-12,9;UBERON:0010260,2.19e-12,9;UBERON:0003920,2.19e-12,9;UBERON:0004582,2.19e-12,9;UBERON:0003915,2.45e-12,9;UBERON:0004700,2.45e-12,9;UBERON:0001917,2.45e-12,9;UBERON:0007500,5.66e-08,59;UBERON:0001981,5.66e-08,59;UBERON:0004537,5.66e-08,59;UBERON:0006965,5.66e-08,59;UBERON:0000055,4.47e-07,68 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.596287222100115,0,0.347140501607594,1.13061588384802,0,0.275118041940067,0.835979866147242,0.516833518338658,0,0,0,0,0,0.367663080345869,0,2.50039239195423,0.673588117878509,0.225222960966644,0,0.949265659568129,0.183201743930407,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380508304469197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680374821106063,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315222829196793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.596287222100115,0,0.347140501607594,1.13061588384802,0,0.275118041940067,0.835979866147242,0.516833518338658,0,0,0,0,0,0.367663080345869,0,2.50039239195423,0.673588117878509,0.225222960966644,0,0.949265659568129,0.183201743930407,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380508304469197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680374821106063,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315222829196793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr4:86684588..86684603,- | |||
}} | }} |
Latest revision as of 07:39, 30 July 2015
Short description: | p@chr4:86684588..86684603, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:86684588..86684603, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of umbilical vein | 4.27e-34 | 3 |
blood vessel endothelial cell | 3.88e-23 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.88e-23 | 18 |
vein endothelial cell | 7.67e-18 | 6 |
aortic endothelial cell | 9.07e-18 | 6 |
endothelial cell of vascular tree | 1.03e-17 | 24 |
endothelial cell of artery | 2.45e-12 | 9 |
endothelial cell | 2.91e-12 | 36 |
meso-epithelial cell | 4.55e-10 | 45 |
lining cell | 4.33e-08 | 58 |
barrier cell | 4.33e-08 | 58 |
squamous epithelial cell | 1.52e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 3.88e-23 | 18 |
endothelium | 3.88e-23 | 18 |
cardiovascular system endothelium | 3.88e-23 | 18 |
umbilical vein | 4.21e-21 | 5 |
simple squamous epithelium | 3.41e-19 | 22 |
squamous epithelium | 4.64e-17 | 25 |
vein | 2.19e-12 | 9 |
umbilical blood vessel | 2.19e-12 | 9 |
venous blood vessel | 2.19e-12 | 9 |
venous system | 2.19e-12 | 9 |
endothelial tube | 2.45e-12 | 9 |
arterial system endothelium | 2.45e-12 | 9 |
endothelium of artery | 2.45e-12 | 9 |
epithelial tube open at both ends | 5.66e-08 | 59 |
blood vessel | 5.66e-08 | 59 |
blood vasculature | 5.66e-08 | 59 |
vascular cord | 5.66e-08 | 59 |
vessel | 4.47e-07 | 68 |