FFCP PHASE1:Hg19::chr12:47473898..47473903,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=347902 | |EntrezGene=347902 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24073 | |HGNC=24073 | ||
|TSSclassifier=strong | |||
|UniProt=Q86SJ2 | |UniProt=Q86SJ2 | ||
|association_with_transcript=-164bp_to_ENST00000429635,NM_001143668,NM_181847,uc001rpk.2,uc001rpl.2,uc001rpm.2_5end | |association_with_transcript=-164bp_to_ENST00000429635,NM_001143668,NM_181847,uc001rpk.2,uc001rpl.2,uc001rpm.2_5end | ||
|cluster_id=chr12:47473898..47473903,- | |||
|coexpression_cluster_id=C893 | |coexpression_cluster_id=C893 | ||
|description=CAGE_peak_11_at_AMIGO2_5end | |description=CAGE_peak_11_at_AMIGO2_5end | ||
Latest revision as of 12:14, 18 September 2015
| Short description: | p11@AMIGO2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_11_at_AMIGO2_5end |
| Coexpression cluster: | C893_osteoclastoma_Urothelial_tubular_nonsmall_Mesenchymal_Renal_hepatic |
| Association with transcript: | -164bp_to_ENST00000429635, NM_001143668, NM_181847, uc001rpk.2, uc001rpl.2, uc001rpm.2_5end |
| EntrezGene: | AMIGO2 |
| HGNC: | 24073 |
| UniProt: | Q86SJ2 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p11@AMIGO2 |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| transitional epithelial cell | 4.01e-19 | 4 |
| urothelial cell | 4.01e-19 | 4 |
| epithelial cell | 6.01e-07 | 253 |
| epithelial cell of Malassez | 6.36e-07 | 3 |
Showing 1 to 4 of 4 entries
| Ontology term | p-value | n |
|---|---|---|
| urothelium | 6.15e-23 | 5 |
| transitional epithelium | 4.43e-19 | 6 |
| endo-epithelium | 4.59e-09 | 82 |
Showing 1 to 3 of 3 entries
| Ontology term | p-value | n |
|---|---|---|
| tubular adenocarcinoma | 8.28e-11 | 2 |
| female reproductive organ cancer | 2.42e-07 | 27 |
| reproductive organ cancer | 9.02e-07 | 29 |
Showing 1 to 3 of 3 entries
