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MCL coexpression mm9:531: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002048!1.39e-09!14;UBERON:0000117!1.39e-09!14;UBERON:0000171!1.39e-09!14;UBERON:0000170!1.39e-09!14;UBERON:0005597!1.39e-09!14;UBERON:0000118!1.39e-09!14;UBERON:0005177!4.40e-09!79;UBERON:0005153!2.23e-08!17;UBERON:0000464!3.94e-08!57;UBERON:0006554!4.19e-08!18;UBERON:0001008!3.58e-07!19;UBERON:0000468!6.70e-07!333;UBERON:0002113!9.33e-07!14;UBERON:0003918!9.33e-07!14;UBERON:0011143!9.33e-07!14;UBERON:0005095!9.33e-07!14;UBERON:0007687!9.33e-07!14
|tfbs_overrepresentation_for_novel_motifs=1.85939,0.462564,0.204219,0.25808,0.123731,1.36386,0.915684,0.237242,0.536572,0.415336,0.831817,0.336042,0.237599,0.357027,0.419678,0,0.530547,0.118546,0.814719,0.24668,0.523517,0.0622339,0.356242,0.388504,0.603782,1.75954,0.203385,0.287195,0.469653,0.338204,0.75617,0.624931,0.373899,0.176308,3.35788,0.425764,0.725394,0.332941,0.097604,1.46213,0.77022,0.279796,0.0536251,0.136236,0.184219,1.98972,0.457618,0.300372,0.0394476,0.474834,0.514446,0.404841,0.321327,0.759566,0.776306,0.363247,0.163199,0.325117,0.190698,0.36147,0.606104,0.413233,0.569343,0.504093,1.73147,0.541429,0.908031,1.25063,0.60172,1.10561,0.555733,0.246154,3.07739,0.808562,2.07384,0.0433214,1.08401,4.01299,0.590017,0.531085,0.247973,1.34858,0.411949,0.493111,0.69807,11.9804,33.7412,0.145915,0.462057,1.41118,0.975915,1.67583,0.636995,0.401201,0.315787,0.287636,0.233568,0.639644,0.457849,0.842735,0.111186,2.56729,0.742871,0.514993,0.514023,0.279432,0.569344,0.296997,0.539826,1.01053,0.218949,0.744577,0.180573,0.841652,0.982794,0.119923,4.20538,0.26114,0.53175,0.108794,0.813766,0.484912,0.995764,0.446521,1.03573,0.593478,0.353461,0.630607,0.906557,0.129636,0.726634,0.252176,0.877862,0.375176,1.0039,0.546308,0.65343,0.280962,0.955897,1.77738,1.3796,0.91261,0.393303,0.634793,0.508066,1.40165,0.460443,1.73788,0.232952,0.124893,6.40707,1.07944,0.761071,1.0355,0.374365,0.839715,0.405736,0.143092,0.222538,1.21781,0.96517,0.697256,0.593895,0.620756,0.50503,0.367885,1.18797,0.33468,0.238727
}}

Latest revision as of 15:27, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:69609432..69609449,-p2@Chrnb1
Mm9::chr11:8368820..8368825,-p14@Tns3
Mm9::chr13:60774352..60774365,+p@chr13:60774352..60774365
+
Mm9::chr1:154472342..154472350,-p5@Rgl1
Mm9::chr6:31512066..31512069,-p@chr6:31512066..31512069
-
Mm9::chr6:31513840..31513854,-p3@Podxl
Mm9::chr6:31513855..31513880,-p1@Podxl
Mm9::chr6:31513882..31513883,-p6@Podxl
Mm9::chr6:31513888..31513910,-p2@Podxl
Mm9::chr6:31513926..31513935,-p4@Podxl
Mm9::chr6:31513978..31513989,-p5@Podxl
Mm9::chr9:50302338..50302377,+p2@1600029D21Rik
Mm9::chrX:96237943..96237952,+p3@Stard8
Mm9::chrX:96237959..96238000,+p1@Stard8


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
lung1.39e-0914
respiratory tube1.39e-0914
respiration organ1.39e-0914
pair of lungs1.39e-0914
lung primordium1.39e-0914
lung bud1.39e-0914
trunk region element4.40e-0979
epithelial bud2.23e-0817
anatomical space3.94e-0857
urinary system structure4.19e-0818
renal system3.58e-0719
multi-cellular organism6.70e-07333
kidney9.33e-0714
kidney mesenchyme9.33e-0714
upper urinary tract9.33e-0714
kidney rudiment9.33e-0714
kidney field9.33e-0714


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.11.16498
MA0004.10.258473
MA0006.10.817804
MA0007.10.689082
MA0009.10.649874
MA0014.11.94549
MA0017.10.458117
MA0019.10.480432
MA0024.10.608636
MA0025.10.873493
MA0027.12.275
MA0028.10.138956
MA0029.10.588275
MA0030.10.594419
MA0031.10.561217
MA0038.10.381016
MA0040.10.661716
MA0041.10.198922
MA0042.10.189008
MA0043.10.74191
MA0046.10.683926
MA0048.12.68689
MA0050.10.290354
MA0051.10.388883
MA0052.10.669354
MA0055.10.45021
MA0056.10
MA0057.10.489127
MA0058.10.183941
MA0059.10.19314
MA0060.10.279564
MA0061.10.671982
MA0063.10
MA0066.10.371389
MA0067.10.981551
MA0068.10.0266408
MA0069.10.669676
MA0070.11.58777
MA0071.10.788348
MA0072.10.652465
MA0073.125.4209
MA0074.10.340281
MA0076.10.163664
MA0077.10.632005
MA0078.10.418168
MA0081.10.210747
MA0083.10.741151
MA0084.11.30392
MA0087.10.699999
MA0088.10.569713
MA0089.10
MA0090.10.653402
MA0091.10.269175
MA0092.10.653984
MA0093.10.144649
MA0095.10
MA0098.10
MA0100.10.879972
MA0101.12.44159
MA0103.10.157724
MA0105.10.385363
MA0106.10.425111
MA0107.13.57386
MA0108.20.50131
MA0109.10
MA0111.10.679612
MA0113.10.400008
MA0114.11.6276
MA0115.10.744589
MA0116.10.131762
MA0117.10.713754
MA0119.10.200349
MA0122.10.732707
MA0124.10.929684
MA0125.10.857794
MA0130.10
MA0131.12.08224
MA0132.10
MA0133.10
MA0135.10.77683
MA0136.10.357464
MA0139.10.0649474
MA0140.10.330266
MA0141.10.511953
MA0142.10.547747
MA0143.10.414534
MA0144.10.328866
MA0145.10.0731548
MA0146.10.0854135
MA0147.11.71317
MA0148.10.271704
MA0149.10.204102
MA0062.20.046824
MA0035.20.33429
MA0039.22.88069
MA0138.20.469076
MA0002.20.87145
MA0137.20.169785
MA0104.21.92766
MA0047.20.380343
MA0112.22.13651
MA0065.22.14144
MA0150.10.246295
MA0151.10
MA0152.10.380437
MA0153.10.792819
MA0154.10.118426
MA0155.10.423059
MA0156.10.163042
MA0157.10.518122
MA0158.10
MA0159.10.114033
MA0160.10.274172
MA0161.10
MA0162.11.68081
MA0163.10.00169705
MA0164.10.940888
MA0080.20.153997
MA0018.20.366212
MA0099.20.463355
MA0079.29.46105
MA0102.21.35579
MA0258.13.45377
MA0259.10.101001
MA0442.10
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