FFCP PHASE1:Hg19::chr6:53013620..53013644,-: Difference between revisions
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|id=chr6:53013620..53013644,-
|short_description=p1@GCM1
|description=CAGE_peak_1_at_GCM1_5end
|association_with_transcript=0bp_to_ENST00000259803,NM_003643,uc003pb...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8521 | |EntrezGene=8521 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4197 | |HGNC=4197 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NP62 | |UniProt=Q9NP62 | ||
|association_with_transcript=0bp_to_ENST00000259803,NM_003643,uc003pbp.2,uc010jzr.2_5end | |||
|cluster_id=chr6:53013620..53013644,- | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_1_at_GCM1_5end | |||
|id=chr6:53013620..53013644,- | |||
|ontology_enrichment_celltype=CL:0002541!3.89e-23!3;CL:0000039!6.61e-17!7;CL:0000586!6.61e-17!7;CL:0002563!3.41e-08!4;CL:0002537!9.98e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002541;1.89e-50;3!CL:0000039;7.05e-22;7!CL:0000586;7.05e-22;7!CL:0000349;2.45e-14;19!CL:0002253;2.02e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,1.89e-50,3;CL:0000039,7.05e-22,7;CL:0000586,7.05e-22,7;CL:0000349,2.45e-14,19;CL:0002253,2.02e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0003124;2.66e-18;1 | |||
|ontology_enrichment_disease=DOID:1799!1.10e-08!1;DOID:10165!1.10e-08!1;DOID:1798!1.10e-08!1 | |||
|ontology_enrichment_disease_v019=DOID:1799;1.22e-17;1!DOID:10165;1.22e-17;1!DOID:1798;1.22e-17;1!DOID:3095;2.21e-07;22!DOID:2994;2.21e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,1.22e-17,1;DOID:10165,1.22e-17,1;DOID:1798,1.22e-17,1;DOID:3095,2.21e-07,22;DOID:2994,2.21e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000476!3.89e-23!3;UBERON:0000920!3.89e-23!3;UBERON:0005631!1.20e-18!14;UBERON:0000158!1.20e-18!14;UBERON:0003124!1.91e-17!7;UBERON:0000478!1.16e-10!24;UBERON:0006947!1.87e-10!3;UBERON:0004054!1.87e-10!3;UBERON:0001000!1.48e-08!1;UBERON:0005352!1.48e-08!1;UBERON:0001301!2.29e-08!1;UBERON:0001242!3.41e-08!4;UBERON:0001262!3.41e-08!4;UBERON:0004786!3.41e-08!4;UBERON:0004808!3.41e-08!4;UBERON:0001277!3.41e-08!4;UBERON:0005904!4.71e-08!4;UBERON:0004923!3.65e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;1.89e-50;3!UBERON:0000920;1.89e-50;3!UBERON:0005631;7.26e-27;10!UBERON:0000158;7.26e-27;10!UBERON:0000478;1.93e-17;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,1.89e-50,3;UBERON:0003124,1.73e-38,7;UBERON:0005631,9.03e-30,14;UBERON:0000158,9.03e-30,14;UBERON:0000478,1.93e-17,24;UBERON:0004923,7.16e-09,66 | |||
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|short_description=p1@GCM1 | |||
}} | }} |
Latest revision as of 06:53, 19 September 2015
Short description: | p1@GCM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GCM1_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000259803, NM_003643, uc003pbp.2, uc010jzr.2_5end |
EntrezGene: | GCM1 |
HGNC: | 4197 |
UniProt: | Q9NP62 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 1.89e-50 | 3 |
germ line cell | 7.05e-22 | 7 |
germ cell | 7.05e-22 | 7 |
extraembryonic cell | 2.45e-14 | 19 |
epithelial cell of large intestine | 2.02e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 1.89e-50 | 3 |
chorion | 1.73e-38 | 7 |
extraembryonic membrane | 9.03e-30 | 14 |
membranous layer | 9.03e-30 | 14 |
extraembryonic structure | 1.93e-17 | 24 |
organ component layer | 7.16e-09 | 66 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 1.22e-17 | 1 |
endocrine pancreas cancer | 1.22e-17 | 1 |
pancreatic endocrine carcinoma | 1.22e-17 | 1 |
germ cell and embryonal cancer | 2.21e-07 | 22 |
germ cell cancer | 2.21e-07 | 22 |