FFCP PHASE1:Hg19::chr6:56484963..56484989,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr6:56484963..56484989,+
|short_description=p@chr6:56484963..56484989,+
|description=CAGE_peak_at_chr6:56484963..56484989,+
|association_with_transcript=NA
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr6:56484963..56484989,+ | |||
|coexpression_cluster_id=C457 | |||
|description=CAGE_peak_at_chr6:56484963..56484989,+ | |||
|id=chr6:56484963..56484989,+ | |||
|ontology_enrichment_celltype=CL:0002076!4.09e-18!43;CL:0000066!5.52e-15!254;CL:0000223!1.53e-14!59;CL:0002251!1.01e-13!21;CL:0000076!4.91e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0002623;5.44e-23;3!CL:0002336;2.66e-18;1!CL:0002261;2.66e-18;1!CL:0002170;2.66e-18;1!CL:0002327;1.03e-17;4!CL:0002076;5.01e-17;42!CL:0000622;3.25e-14;5!CL:0000240;3.26e-12;6!CL:0000311;3.26e-12;6!CL:0000079;3.26e-12;6!CL:0000237;3.26e-12;6!CL:0000154;5.23e-12;6!CL:0002368;5.88e-12;13!CL:0000150;2.60e-08;9!CL:0002251;4.00e-08;20!CL:0002231;9.37e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002623,8.04e-23,3;CL:0002076,8.18e-19,42;CL:0002336,2.66e-18,1;CL:0002261,2.66e-18,1;CL:0002170,2.66e-18,1;CL:0002327,1.13e-17,4;CL:0000622,4.11e-14,5;CL:0000223,1.56e-13,58;CL:0000240,2.91e-12,6;CL:0000311,2.91e-12,6;CL:0000079,2.91e-12,6;CL:0000237,2.91e-12,6;CL:0000036,2.91e-12,6;CL:0000357,2.91e-12,6;CL:0000114,2.91e-12,6;CL:0002368,5.99e-12,13;CL:0000154,6.34e-12,6;CL:0000150,2.96e-08,9;CL:0002251,4.35e-08,20;CL:0000066,5.15e-07,253;CL:0002231,8.15e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000357;3.26e-12;6!CL:0000114;3.26e-12;6!CL:0000223;1.82e-08;58 | |||
|ontology_enrichment_disease=DOID:1749!1.38e-13!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003729!1.27e-13!5;UBERON:0000161!1.42e-11!35;UBERON:0003343!6.37e-11!4;UBERON:0004785!6.37e-11!4;UBERON:0001004!1.89e-10!72;UBERON:0004119!4.03e-10!169;UBERON:0000925!4.03e-10!169;UBERON:0006595!4.03e-10!169;UBERON:0000166!7.59e-09!21;UBERON:0000974!1.04e-08!10;UBERON:0003102!7.58e-08!95;UBERON:0000165!8.54e-08!28;UBERON:0000930!8.54e-08!28;UBERON:0000344!2.38e-07!12;UBERON:0001007!7.62e-07!155;UBERON:0001555!7.62e-07!155;UBERON:0007026!7.62e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0001911;1.03e-17;4!UBERON:0001044;5.23e-12;6!UBERON:0003293;5.23e-12;6!UBERON:0003294;5.23e-12;6!UBERON:0010047;5.23e-12;6!UBERON:0003408;5.23e-12;6!UBERON:0000167;5.23e-12;6!UBERON:0002365;7.78e-09;31!UBERON:0002330;7.78e-09;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001911,1.13e-17,4;UBERON:0005333,1.13e-17,4;UBERON:0008425,1.13e-17,4;UBERON:0005311,1.13e-17,4;UBERON:0001044,6.34e-12,6;UBERON:0003293,6.34e-12,6;UBERON:0003294,6.34e-12,6;UBERON:0010047,6.34e-12,6;UBERON:0000167,6.34e-12,6;UBERON:0000076,2.55e-09,8;UBERON:0002365,7.18e-09,31;UBERON:0002330,7.18e-09,31;UBERON:0003408,1.62e-07,10;UBERON:0002530,4.73e-07,59 | |||
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| ||
|short_description=p@chr6:56484963..56484989,+ | |||
}} | }} |
Latest revision as of 02:30, 31 July 2015
Short description: | p@chr6:56484963..56484989, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:56484963..56484989, + |
Coexpression cluster: | C457_salivary_Prostate_oral_Small_Keratinocyte_Urothelial_Mammary |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
acinar cell of salivary gland | 8.04e-23 | 3 |
endo-epithelial cell | 8.18e-19 | 42 |
buccal mucosa cell | 2.66e-18 | 1 |
endothelial cell of viscerocranial mucosa | 2.66e-18 | 1 |
keratinized cell of the oral mucosa | 2.66e-18 | 1 |
mammary gland epithelial cell | 1.13e-17 | 4 |
acinar cell | 4.11e-14 | 5 |
endodermal cell | 1.56e-13 | 58 |
stratified squamous epithelial cell | 2.91e-12 | 6 |
keratin accumulating cell | 2.91e-12 | 6 |
stratified epithelial cell | 2.91e-12 | 6 |
keratinizing barrier epithelial cell | 2.91e-12 | 6 |
epithelial fate stem cell | 2.91e-12 | 6 |
stratified epithelial stem cell | 2.91e-12 | 6 |
surface ectodermal cell | 2.91e-12 | 6 |
respiratory epithelial cell | 5.99e-12 | 13 |
protein secreting cell | 6.34e-12 | 6 |
glandular epithelial cell | 2.96e-08 | 9 |
epithelial cell of alimentary canal | 4.35e-08 | 20 |
epithelial cell | 5.15e-07 | 253 |
epithelial cell of prostate | 8.15e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
mammary gland | 1.13e-17 | 4 |
mammary bud | 1.13e-17 | 4 |
mammary ridge | 1.13e-17 | 4 |
mammary placode | 1.13e-17 | 4 |
saliva-secreting gland | 6.34e-12 | 6 |
gland of oral region | 6.34e-12 | 6 |
gland of foregut | 6.34e-12 | 6 |
oral gland | 6.34e-12 | 6 |
oral cavity | 6.34e-12 | 6 |
external ectoderm | 2.55e-09 | 8 |
exocrine gland | 7.18e-09 | 31 |
exocrine system | 7.18e-09 | 31 |
gland of gut | 1.62e-07 | 10 |
gland | 4.73e-07 | 59 |