FFCP PHASE1:Hg19::chr11:60236497..60236513,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr11:60236497..60236513,+ | |||
|coexpression_cluster_id=C650 | |||
|description=CAGE_peak_at_chr11:60236497..60236513,+ | |||
|id=chr11:60236497..60236513,+ | |||
|ontology_enrichment_celltype=CL:0000945!6.51e-101!24;CL:0000826!6.51e-101!24;CL:0000236!3.32e-48!14;CL:0000542!1.02e-47!53;CL:0000051!1.02e-47!53;CL:0000838!3.92e-44!52;CL:0002087!2.08e-24!119;CL:0000738!5.55e-20!140;CL:0002031!2.00e-17!124;CL:0000037!2.64e-15!172;CL:0000566!2.64e-15!172;CL:0000988!3.53e-14!182;CL:0002032!2.51e-13!165;CL:0000837!2.51e-13!165;CL:0000785!8.86e-13!2;CL:0000955!8.86e-13!2;CL:0000818!8.86e-13!2;CL:0000954!8.86e-13!2;CL:0000816!8.86e-13!2;CL:0000817!8.41e-09!3;CL:0000842!5.61e-08!3;CL:0000946!2.36e-07!1;CL:0000786!2.36e-07!1;CL:0000980!2.36e-07!1;CL:0000819!4.25e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0000945;5.55e-90;24!CL:0000236;9.95e-57;13!CL:0000542;1.82e-26;53!CL:0000946;5.98e-17;1!CL:0000786;5.98e-17;1!CL:0000785;1.93e-16;1!CL:0000819;1.93e-16;1!CL:0002087;4.13e-10;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,5.56e-90,24;CL:0000826,5.56e-90,24;CL:0000236,6.41e-69,14;CL:0000542,2.06e-47,53;CL:0000051,2.06e-47,53;CL:0000838,3.93e-41,52;CL:0000785,2.54e-31,2;CL:0000955,2.54e-31,2;CL:0000818,2.54e-31,2;CL:0000954,2.54e-31,2;CL:0000816,2.54e-31,2;CL:0000817,2.96e-21,3;CL:0002087,3.64e-21,115;CL:0000738,9.17e-18,136;CL:0002031,3.86e-17,120;CL:0000946,6.47e-17,1;CL:0000786,6.47e-17,1;CL:0000980,6.47e-17,1;CL:0000819,3.07e-16,1;CL:0002032,7.41e-15,161;CL:0000837,7.41e-15,161;CL:0000037,3.40e-14,168;CL:0000988,2.02e-13,177 | |||
|ontology_enrichment_development_v019=CL:0000954;1.48e-31;2!CL:0000051;1.82e-26;53 | |||
|ontology_enrichment_disease=DOID:0060058!9.63e-20!10;DOID:630!2.22e-07!1;DOID:0050177!2.22e-07!1;DOID:0050427!2.22e-07!1;DOID:12603!3.57e-07!1;DOID:4960!3.78e-07!1;DOID:0070004!3.78e-07!1;DOID:0060073!4.25e-07!1;DOID:8675!4.25e-07!1;DOID:2355!8.02e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:630;5.98e-17;1!DOID:0050177;5.98e-17;1!DOID:0050427;5.98e-17;1!DOID:4960;1.93e-16;1!DOID:0060073;1.93e-16;1!DOID:0070004;1.93e-16;1!DOID:8675;1.93e-16;1!DOID:12603;1.93e-16;1 | |||
|ontology_enrichment_disease_v019_2=DOID:630,5.53e-17,1;DOID:0050177,5.53e-17,1;DOID:0050427,5.53e-17,1;DOID:12603,1.93e-16,1;DOID:4960,2.25e-16,1;DOID:0070004,2.25e-16,1;DOID:0060073,3.07e-16,1;DOID:8675,3.07e-16,1 | |||
|ontology_enrichment_uberon=UBERON:0002106!2.33e-08!3;UBERON:0004854!2.33e-08!3;UBERON:0009034!2.33e-08!3;UBERON:0002095!2.33e-08!3;UBERON:0004782!2.33e-08!3;UBERON:0003281!2.33e-08!3;UBERON:0009664!2.33e-08!3;UBERON:0002296!2.33e-08!3;UBERON:0005602!2.33e-08!3;UBERON:0001179!2.33e-08!3;UBERON:0006293!2.33e-08!3;UBERON:0004177!1.52e-07!7;UBERON:0000029!8.49e-07!1;UBERON:0002171!8.98e-07!1;UBERON:0006518!8.98e-07!1;UBERON:0008949!8.98e-07!1;UBERON:0000101!8.98e-07!1;UBERON:0002167!8.98e-07!1 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.90370941842215,0.985207073399349,1.25937250101887,0,0,0,0,0,0,0.697204805222715,0.710846162437108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,1.63841583378639,0,2.98711155796555,0.800791974072025,0.574752439954483,1.98313461835459,0.954053754535364,6.83055562931338,2.34894875748376,1.91136614062614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0.79312517629427,0,0,0,1.48642540100575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0.246169610922139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.094728735294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508039992394707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414239055347196,0.496166021811951,0,0.730755590285376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37771983728653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.11131766400604,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281951753939561,0,0.999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0.134704106029175,0,0.332660356546013,0,0,0,0,0,0,0,0,0.402547587182052,3.8468219076388 | |||
|short_description=p@chr11:60236497..60236513,+ | |||
}} |
Latest revision as of 23:16, 23 July 2015
Short description: | p@chr11:60236497..60236513, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:60236497..60236513, + |
Coexpression cluster: | C650_CD19_B_lymphoma_xeroderma_splenic_Burkitt_plasma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 5.56e-90 | 24 |
pro-B cell | 5.56e-90 | 24 |
B cell | 6.41e-69 | 14 |
lymphocyte | 2.06e-47 | 53 |
common lymphoid progenitor | 2.06e-47 | 53 |
lymphoid lineage restricted progenitor cell | 3.93e-41 | 52 |
mature B cell | 2.54e-31 | 2 |
pre-B-II cell | 2.54e-31 | 2 |
transitional stage B cell | 2.54e-31 | 2 |
small pre-B-II cell | 2.54e-31 | 2 |
immature B cell | 2.54e-31 | 2 |
precursor B cell | 2.96e-21 | 3 |
nongranular leukocyte | 3.64e-21 | 115 |
leukocyte | 9.17e-18 | 136 |
hematopoietic lineage restricted progenitor cell | 3.86e-17 | 120 |
antibody secreting cell | 6.47e-17 | 1 |
plasma cell | 6.47e-17 | 1 |
plasmablast | 6.47e-17 | 1 |
B-1 B cell | 3.07e-16 | 1 |
hematopoietic oligopotent progenitor cell | 7.41e-15 | 161 |
hematopoietic multipotent progenitor cell | 7.41e-15 | 161 |
hematopoietic stem cell | 3.40e-14 | 168 |
hematopoietic cell | 2.02e-13 | 177 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 5.53e-17 | 1 |
monogenic disease | 5.53e-17 | 1 |
xeroderma pigmentosum | 5.53e-17 | 1 |
acute leukemia | 1.93e-16 | 1 |
bone marrow cancer | 2.25e-16 | 1 |
myeloma | 2.25e-16 | 1 |
lymphatic system cancer | 3.07e-16 | 1 |
lymphosarcoma | 3.07e-16 | 1 |