FFCP PHASE1:Hg19::chr1:153114001..153114013,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6702,6700,6703 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11263,11261,11264 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-32bp_to_NR_003062,uc001fbf.2,uc001fbj.2,uc009wnz.2_5end | |||
|cluster_id=chr1:153114001..153114013,- | |||
|coexpression_cluster_id=C197 | |||
|description=CAGE_peak_2_at_SPRR2C_5end,CAGE_peak_3_at_SPRR2D_5end,CAGE_peak_4_at_SPRR2A_5end | |||
|id=chr1:153114001..153114013,- | |||
|ontology_enrichment_celltype=CL:0002166!7.42e-20!3;CL:0002621!2.02e-19!3;CL:0002076!2.14e-12!43;CL:0002368!2.06e-11!13;CL:0000223!2.16e-10!59;CL:0000068!6.47e-09!3;CL:0000069!6.47e-09!3;CL:0000307!6.47e-09!3;CL:0000377!6.47e-09!3;CL:1001319!2.35e-07!1;CL:1000600!2.35e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0002166;3.86e-38;3!CL:0002621;8.57e-11;3!CL:0002159;5.15e-09;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002166,3.19e-38,3;CL:0002621,8.99e-11,3;CL:0002159,4.95e-09,14 | |||
|ontology_enrichment_development_v019=UBERON:0009143;1.54e-29;1!UBERON:0008814;1.15e-15;2!UBERON:0010056;1.15e-15;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001949!2.02e-19!3;UBERON:0001708!4.97e-15!4;UBERON:0001704!4.97e-15!4;UBERON:0000166!7.46e-14!21;UBERON:0000161!6.42e-13!35;UBERON:0001004!6.95e-12!72;UBERON:0002090!3.50e-10!6;UBERON:0000165!3.63e-10!28;UBERON:0000930!3.63e-10!28;UBERON:0001723!2.24e-09!3;UBERON:0001033!2.24e-09!3;UBERON:0010056!2.24e-09!3;UBERON:0003126!2.30e-08!7;UBERON:0001005!2.30e-08!7;UBERON:0000065!6.20e-08!53;UBERON:0004119!6.37e-08!169;UBERON:0000925!6.37e-08!169;UBERON:0006595!6.37e-08!169;UBERON:0002372!7.03e-08!1;UBERON:0001961!7.03e-08!1;UBERON:0001744!7.03e-08!1;UBERON:0001735!7.03e-08!1;UBERON:0001828!1.38e-07!8;UBERON:0004645!2.35e-07!1;UBERON:0001256!2.35e-07!1;UBERON:0001259!2.35e-07!1;UBERON:0000997!3.01e-07!1;UBERON:0005056!3.01e-07!1;UBERON:0006834!3.40e-07!1;UBERON:0007196!3.52e-07!14;UBERON:0001558!3.52e-07!14;UBERON:0001282!3.62e-07!1;UBERON:0009842!3.62e-07!1;UBERON:0003704!3.62e-07!1;UBERON:0001171!3.62e-07!1;UBERON:0001172!3.62e-07!1;UBERON:0001007!8.36e-07!155;UBERON:0001555!8.36e-07!155;UBERON:0007026!8.36e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0002372;9.99e-30;1!UBERON:0001961;9.99e-30;1!UBERON:0001744;9.99e-30;1!UBERON:0001042;9.99e-30;1!UBERON:0001735;9.99e-30;1!UBERON:0001708;6.47e-29;4!UBERON:0008895;6.47e-29;4!UBERON:0011159;2.27e-23;5!UBERON:0006562;1.33e-15;2!UBERON:0011137;3.30e-11;11!UBERON:0010323;3.30e-11;11!UBERON:0001723;6.73e-11;3!UBERON:0001033;6.73e-11;3!UBERON:0001043;8.57e-11;3!UBERON:0001949;8.57e-11;3!UBERON:0000165;6.81e-10;28!UBERON:0000075;5.27e-08;16!UBERON:0000161;5.75e-07;19!UBERON:0000166;5.75e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002372,9.99e-30,1;UBERON:0001961,9.99e-30,1;UBERON:0001744,9.99e-30,1;UBERON:0001735,9.99e-30,1;UBERON:0001708,5.61e-29,4;UBERON:0008895,5.61e-29,4;UBERON:0011159,2.02e-23,5;UBERON:0010188,1.04e-19,6;UBERON:0002539,1.04e-19,6;UBERON:0008816,1.04e-19,6;UBERON:0008814,7.17e-15,18;UBERON:0000033,5.32e-13,56;UBERON:0001042,1.89e-12,10;UBERON:0009145,1.89e-12,10;UBERON:0000166,2.17e-12,22;UBERON:0000153,8.92e-12,62;UBERON:0007811,8.92e-12,62;UBERON:0006562,2.07e-11,11;UBERON:0010323,3.14e-11,11;UBERON:0001723,6.73e-11,3;UBERON:0001033,6.73e-11,3;UBERON:0010056,6.73e-11,3;UBERON:0001043,8.17e-11,3;UBERON:0009143,8.17e-11,3;UBERON:0001949,8.99e-11,3;UBERON:0000165,1.44e-09,29;UBERON:0000930,1.44e-09,29;UBERON:0011137,4.95e-09,14;UBERON:0000075,5.09e-08,16;UBERON:0000161,7.77e-08,36;UBERON:0003102,1.77e-07,99;UBERON:0001557,5.34e-07,19 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.90361775633475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,2.18196896472668,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,1.34385702559088,1.27597587518148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0.670302275535787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.697118721393016,1.00035336054936,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0,0,0,0,0,0,2.90967049465258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.687034029507179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378893491091197,0.803892390468535,0,0,0.213233981900981,0,0,0,0.112131862580613,0,0,16.1110393443751,0.342233301085281,4.44523549896278,0.78894425931944,0,0.325613074443898,0,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p2@SPRR2C,p3@SPRR2D,p4@SPRR2A | |||
}} |
Latest revision as of 04:41, 17 September 2015
Short description: | p2@SPRR2C, p3@SPRR2D, p4@SPRR2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SPRR2C_5end, CAGE_peak_3_at_SPRR2D_5end, CAGE_peak_4_at_SPRR2A_5end |
Coexpression cluster: | C197_tongue_esophagus_tonsil_salivary_cervix_nasal_Gingival |
Association with transcript: | -32bp_to_NR_003062, uc001fbf.2, uc001fbj.2, uc009wnz.2_5end |
EntrezGene: | 6702,6700,6703 |
HGNC: | 11261, 11264&submit=Submit 11263, 11261, 11264 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of Malassez | 3.19e-38 | 3 |
gingival epithelial cell | 8.99e-11 | 3 |
general ecto-epithelial cell | 4.95e-09 | 14 |
Ontology term | p-value | n |
---|---|---|
tonsil | 9.99e-30 | 1 |
mucosa-associated lymphoid tissue | 9.99e-30 | 1 |
lymphoid tissue | 9.99e-30 | 1 |
tonsillar ring | 9.99e-30 | 1 |
jaw skeleton | 5.61e-29 | 4 |
splanchnocranium | 5.61e-29 | 4 |
primary subdivision of cranial skeletal system | 2.02e-23 | 5 |
protuberance | 1.04e-19 | 6 |
pharyngeal arch | 1.04e-19 | 6 |
embryonic head | 1.04e-19 | 6 |
pharyngeal arch system | 7.17e-15 | 18 |
head | 5.32e-13 | 56 |
chordate pharynx | 1.89e-12 | 10 |
pharyngeal region of foregut | 1.89e-12 | 10 |
oral opening | 2.17e-12 | 22 |
anterior region of body | 8.92e-12 | 62 |
craniocervical region | 8.92e-12 | 62 |
pharynx | 2.07e-11 | 11 |
cranial skeletal system | 3.14e-11 | 11 |
tongue | 6.73e-11 | 3 |
gustatory system | 6.73e-11 | 3 |
future tongue | 6.73e-11 | 3 |
esophagus | 8.17e-11 | 3 |
esophageal region | 8.17e-11 | 3 |
gingival epithelium | 8.99e-11 | 3 |
mouth | 1.44e-09 | 29 |
stomodeum | 1.44e-09 | 29 |
axial skeletal system | 4.95e-09 | 14 |
subdivision of skeletal system | 5.09e-08 | 16 |
orifice | 7.77e-08 | 36 |
surface structure | 1.77e-07 | 99 |
upper respiratory tract | 5.34e-07 | 19 |