FFCP PHASE1:Hg19::chr21:38631055..38631068,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr21:38631055..38631068,- | |||
|description=CAGE_peak_at_chr21:38631055..38631068,- | |||
|id=chr21:38631055..38631068,- | |||
|ontology_enrichment_celltype=CL:0002076!2.17e-28!43;CL:0000223!8.46e-19!59;CL:0002368!3.33e-18!13;CL:0000066!3.73e-16!254;CL:0002251!1.34e-15!21;CL:0002202!2.28e-10!9;CL:0002632!2.28e-10!9;CL:0000076!4.39e-10!62;CL:0002159!4.95e-09!13;CL:0002328!7.15e-09!3;CL:0000068!8.13e-09!3;CL:0000069!8.13e-09!3;CL:0000307!8.13e-09!3;CL:0000377!8.13e-09!3;CL:0002621!9.25e-09!3;CL:0002166!1.89e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0000575;2.54e-31;2!CL:0002252;1.41e-16;1!CL:0002251;1.13e-12;20!CL:0002076;4.11e-10;42!CL:0002535;5.93e-09;2!CL:0000076;3.59e-08;63!CL:0002202;1.02e-07;9!CL:0002632;1.02e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000575,4.71e-31,2;CL:0000076,7.31e-19,63;CL:0002252,7.57e-17,1;CL:0002076,5.18e-13,42;CL:0002251,9.43e-13,20;CL:0000223,2.36e-09,58;CL:0000066,4.34e-09,253;CL:0002535,5.49e-09,2;CL:0002202,1.02e-07,9;CL:0002632,1.02e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!7.89e-21!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;6.16e-53;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,5.73e-53,14 | |||
|ontology_enrichment_uberon=UBERON:0001004!8.56e-14!72;UBERON:0003729!8.95e-14!5;UBERON:0000974!3.02e-12!10;UBERON:0003343!1.70e-11!4;UBERON:0004785!1.70e-11!4;UBERON:0004119!3.08e-10!169;UBERON:0000925!3.08e-10!169;UBERON:0006595!3.08e-10!169;UBERON:0000344!7.97e-10!12;UBERON:0000065!3.52e-09!53;UBERON:0004815!7.15e-09!3;UBERON:0002031!7.15e-09!3;UBERON:0001949!9.25e-09!3;UBERON:0001444!2.26e-08!48;UBERON:0007196!3.06e-08!14;UBERON:0001558!3.06e-08!14;UBERON:0000161!7.51e-08!35;UBERON:0001007!3.41e-07!155;UBERON:0001555!3.41e-07!155;UBERON:0007026!3.41e-07!155;UBERON:0004807!4.01e-07!28;UBERON:0000166!7.39e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0003343;2.10e-35;4!UBERON:0004785;2.10e-35;4!UBERON:0000974;7.23e-24;6!UBERON:0000997;1.41e-16;1!UBERON:0005056;1.41e-16;1!UBERON:0004176;1.41e-16;1!UBERON:0000964;3.32e-16;4!UBERON:0010409;3.32e-16;4!UBERON:0003729;2.26e-11;13!UBERON:0006955;5.93e-09;2!UBERON:0004801;5.93e-09;2!UBERON:0000161;5.88e-08;19!UBERON:0000166;5.88e-08;19!UBERON:0000344;1.38e-07;20!UBERON:0010313;4.95e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003343,1.67e-35,4;UBERON:0004785,1.67e-35,4;UBERON:0000997,1.93e-16,1;UBERON:0005056,1.93e-16,1;UBERON:0000964,4.51e-16,4;UBERON:0010409,4.51e-16,4;UBERON:0004348,4.51e-16,4;UBERON:0005427,4.51e-16,4;UBERON:0000974,1.22e-14,10;UBERON:0003729,2.10e-11,13;UBERON:0006955,5.49e-09,2;UBERON:0004801,5.49e-09,2;UBERON:0001444,7.35e-08,49;UBERON:0000344,1.32e-07,20;UBERON:0010313,5.59e-07,10;UBERON:0002342,5.59e-07,10;UBERON:0005062,5.59e-07,10;UBERON:0000166,5.85e-07,22;UBERON:0000033,7.19e-07,56 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.0821005894499457,0,0,0,0,1.83884244895785,0.90361775633475,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0.0654895377488563,1.45718115317017,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74437620857014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0.966304265816484,0.545492241181669,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0.658501712451753,0,0.201057944823262,0.462942225792648,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0.16798212819886,0.850650583454319,0.0895585227028483,0.581267877027924,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0.120859449591622,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0.192190067365106,0.382838137483752,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48111056362756,0.670302275535787,1.08890984861323,0,0.86101074534246,0,0,0.689170200620878,0,0,0,0,0,0,0,0,0,0,1.71528151186722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104421949505455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17590876897253,1.56706571844725,0.34945333648406,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0.114536596165916,0,0,0,0.707082103850386,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249960815924213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0.39997479170986,0,0,0,0,0,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.92590874004102,5.07269810395284,1.65085738669511,0.231051332300676,0.381382095467167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638812138197976,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0.156986185701028,0,0,0,0,0,0.142953088353313,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0.111855431797792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0.4226557275834,0,0,0,0.199882311849858,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,0,0.581300188524055,0.186224142887574,0,0,0,0,0,0,0.0717222053926763,0,0.244209805832924,0,0,0,0,0,0.406896178315738,0,0,0 | |||
|short_description=p@chr21:38631055..38631068,- | |||
}} |
Latest revision as of 17:44, 28 July 2015
Short description: | p@chr21:38631055..38631068, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr21:38631055..38631068, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
corneal epithelial cell | 4.71e-31 | 2 |
squamous epithelial cell | 7.31e-19 | 63 |
epithelial cell of esophagus | 7.57e-17 | 1 |
endo-epithelial cell | 5.18e-13 | 42 |
epithelial cell of alimentary canal | 9.43e-13 | 20 |
endodermal cell | 2.36e-09 | 58 |
epithelial cell | 4.34e-09 | 253 |
epithelial cell of cervix | 5.49e-09 | 2 |
epithelial cell of tracheobronchial tree | 1.02e-07 | 9 |
epithelial cell of lower respiratory tract | 1.02e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
mucosa of oral region | 1.67e-35 | 4 |
respiratory system mucosa | 1.67e-35 | 4 |
mammalian vulva | 1.93e-16 | 1 |
external female genitalia | 1.93e-16 | 1 |
cornea | 4.51e-16 | 4 |
eye surface | 4.51e-16 | 4 |
optic eminence | 4.51e-16 | 4 |
corneal primordium | 4.51e-16 | 4 |
neck | 1.22e-14 | 10 |
mouth mucosa | 2.10e-11 | 13 |
uterine epithelium | 5.49e-09 | 2 |
cervix epithelium | 5.49e-09 | 2 |
subdivision of head | 7.35e-08 | 49 |
mucosa | 1.32e-07 | 20 |
neural crest-derived structure | 5.59e-07 | 10 |
neural crest | 5.59e-07 | 10 |
neural fold | 5.59e-07 | 10 |
oral opening | 5.85e-07 | 22 |
head | 7.19e-07 | 56 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 5.73e-53 | 14 |