FFCP PHASE1:Mm9::chr17:27865882..27865901,-: Difference between revisions
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{{FFCP|EntrezGene=30051|HGNC=|MCL_coexpression_id=468|UniProt=Q9WTP3,B2KF86|association_with_transcript=0bp_to_ENSMUST00000025054,ENSMUST00000114870,NM_013891,uc008bpo.2_5end|description=CAGE_peak_1_at_Spdef_5end|id=chr17:27865882..27865901,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002563,2.26e-07,9;CL:0002251,2.26e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!3.58e-32!59;UBERON:0000160!1.17e-28!43;UBERON:0001007!1.85e-23!128;UBERON:0001555!1.85e-23!128;UBERON:0007026!1.85e-23!128;UBERON:0004119!3.42e-23!130;UBERON:0000925!3.42e-23!130;UBERON:0006595!3.42e-23!130;UBERON:0004921!4.52e-22!126;UBERON:0004185!4.52e-22!126;UBERON:0002108!1.44e-12!16;UBERON:0000344!1.53e-10!15;UBERON:0001045!2.84e-10!13;UBERON:0001264!1.95e-09!12;UBERON:0003922!1.95e-09!12;UBERON:0002114!1.95e-09!12;UBERON:0003923!1.95e-09!12;UBERON:0003924!1.95e-09!12;UBERON:0003921!1.95e-09!12;UBERON:0001242!3.40e-09!13;UBERON:0000060!3.40e-09!13;UBERON:0001262!3.40e-09!13;UBERON:0004786!3.40e-09!13|ontology_enrichment_uberon_v019_2=UBERON:0005409,4.32e-26,47;UBERON:0000160,6.76e-22,31;UBERON:0000344,8.03e-13,15;UBERON:0001264,1.95e-11,12;UBERON:0001242,3.92e-11,13;UBERON:0001262,3.92e-11,13;UBERON:0004786,3.92e-11,13;UBERON:0001007,7.15e-09,116;UBERON:0001555,7.15e-09,116;UBERON:0007026,7.15e-09,116;UBERON:0004119,1.81e-08,118;UBERON:0000925,1.81e-08,118;UBERON:0006595,1.81e-08,118;UBERON:0004921,6.54e-08,114;UBERON:0002075,1.60e-07,19;UBERON:0003350,2.26e-07,9;UBERON:0004808,2.26e-07,9;UBERON:0001277,2.26e-07,9;UBERON:0004923,5.71e-07,24|phase1_expression=0,4.88565570695105,6.3699893514535,3.32710632437513,3.00537437967808,102.909993681988,110.031553720493,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,25.1188103785648,25.4644301984559,12.6331032105304,34.460959692726,41.8014191410625,57.3870726758249,44.6093329675077,84.0358635383605,0,0,0,5.48818077527422,9.30914014007557,5.51257261908397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.97155382935438,0,0,0,0,0,0,0,0.216491041011214,0.760079596425296,1.01104889002957,11.418387971906,0,0,0,0.304465478312141,0,0,0,0,0,0,0,0.161766849947409,0,0,67.101034038524,0,0,32.9539601219083,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420883711772948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23674473558521,0,0,0,0.536546802799238,0,0,0,0,0,0,0,0,0,18.8338706300765,18.7759902331116,0.853153002140936,0.928946687441754,10.1805294444454,15.327947871374,16.6783532883653,23.0173007596197,27.0481565080372,19.7638745668813,20.1068167040216,17.7071260116624,19.8863368861503,25.1669434423182,27.6656703839609,32.6591688137162,0,0.228497025219458,0,0,0.193952487167626,0,0.0632365371242573,0,0,0,0,0.166845105716094,0.196558995113203,0.224862112384854,0,0,0,0,0.162135226775035,0,0,0,0,0,0.179397413521912,0,0.739012760666419,0.189491411770485,1.14075483509418,0.509235257325564,0.234690248288502,0.502518772325447,0.714130922658041,1.56106918286239,0.945810864637146,0.664394068946325,0.478364305972461,0.491589944147214,0.518054945597687,1.15719246865209,0,0,0,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.53566332312248,0,0,7.25868541079156,39.8235415019888,5.09839335925461,15.1161778482376,45.0766140616596,41.0469631104274,25.517117279346,23.7754029714763,14.9048829085777,23.5288269733916,22.4386098134429,45.3300016872495,39.191506434311,0,0,0,0,0,0,0,0,0,0.21183207086382,75.8617689309069,0,0,0,0.119372344003136,0.492422699235184,22.7355052571284,0,0,1.44470807574256,0.185194527369712,0,0,0,0,0,0,77.3283200592242,3.16335993581135,10.1659733563424,18.6849239621716,25.5087721137652,29.6973086694802,23.8709893101133,34.3838375817397,35.8605640518121,21.7753155130212,72.0753603180834,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0.25984164595559,0.716106782669926,1.19208812868759,0.240390899039938,0.295379054349154,0.100966449948148,0.15241361331,0,0,0,0.116876902181569,22.8997687451363,0,0,0,1.54551675225752,0.93841237725591,1.28206136987086,26.3673106267251,25.0786052017682,0,0,0,0,0,0,0,0,0,0,0,0,0.341467211508268,0.729320151204882,0.209613162627982,2.5738091183002,3.77819437262746,2.67845574410562,2.24643446714271,2.27427490587418,2.28131369901216,3.39527414494937,2.80924522409647,2.56100609619477,1.7230640686684,2.38146845641537,1.97003354106254,4.05109362973781,1.23625770240992,1.91358596174717,1.37147700954166,1.06485483695602,2.86123427936785,1.59881058295561,2.35273451038327,2.79228206042532,2.0122077016005,2.10455769150274,2.17286582153379,1.68342681497322,2.13543032623513,2.26560309463796,0.409231043169689,2.94379998253335,1.54325288784913,2.99772693525535,2.8071793013449,2.79332370262788,1.3390183244819,3.30887128679273,0|short_description=p1@Spdef}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=30051 | |||
|HGNC= | |||
|MCL_coexpression_id=468 | |||
|TSSclassifier=NA | |||
|UniProt=Q9WTP3,B2KF86 | |||
|association_with_transcript=0bp_to_ENSMUST00000025054,ENSMUST00000114870,NM_013891,uc008bpo.2_5end | |||
|cluster_id=chr17:27865882..27865901,- | |||
|description=CAGE_peak_1_at_Spdef_5end | |||
|id=chr17:27865882..27865901,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.26e-07,9;CL:0002251,2.26e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!3.58e-32!59;UBERON:0000160!1.17e-28!43;UBERON:0001007!1.85e-23!128;UBERON:0001555!1.85e-23!128;UBERON:0007026!1.85e-23!128;UBERON:0004119!3.42e-23!130;UBERON:0000925!3.42e-23!130;UBERON:0006595!3.42e-23!130;UBERON:0004921!4.52e-22!126;UBERON:0004185!4.52e-22!126;UBERON:0002108!1.44e-12!16;UBERON:0000344!1.53e-10!15;UBERON:0001045!2.84e-10!13;UBERON:0001264!1.95e-09!12;UBERON:0003922!1.95e-09!12;UBERON:0002114!1.95e-09!12;UBERON:0003923!1.95e-09!12;UBERON:0003924!1.95e-09!12;UBERON:0003921!1.95e-09!12;UBERON:0001242!3.40e-09!13;UBERON:0000060!3.40e-09!13;UBERON:0001262!3.40e-09!13;UBERON:0004786!3.40e-09!13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,4.32e-26,47;UBERON:0000160,6.76e-22,31;UBERON:0000344,8.03e-13,15;UBERON:0001264,1.95e-11,12;UBERON:0001242,3.92e-11,13;UBERON:0001262,3.92e-11,13;UBERON:0004786,3.92e-11,13;UBERON:0001007,7.15e-09,116;UBERON:0001555,7.15e-09,116;UBERON:0007026,7.15e-09,116;UBERON:0004119,1.81e-08,118;UBERON:0000925,1.81e-08,118;UBERON:0006595,1.81e-08,118;UBERON:0004921,6.54e-08,114;UBERON:0002075,1.60e-07,19;UBERON:0003350,2.26e-07,9;UBERON:0004808,2.26e-07,9;UBERON:0001277,2.26e-07,9;UBERON:0004923,5.71e-07,24 | |||
|phase1_expression=0,4.88565570695105,6.3699893514535,3.32710632437513,3.00537437967808,102.909993681988,110.031553720493,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,25.1188103785648,25.4644301984559,12.6331032105304,34.460959692726,41.8014191410625,57.3870726758249,44.6093329675077,84.0358635383605,0,0,0,5.48818077527422,9.30914014007557,5.51257261908397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.97155382935438,0,0,0,0,0,0,0,0.216491041011214,0.760079596425296,1.01104889002957,11.418387971906,0,0,0,0.304465478312141,0,0,0,0,0,0,0,0.161766849947409,0,0,67.101034038524,0,0,32.9539601219083,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420883711772948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23674473558521,0,0,0,0.536546802799238,0,0,0,0,0,0,0,0,0,18.8338706300765,18.7759902331116,0.853153002140936,0.928946687441754,10.1805294444454,15.327947871374,16.6783532883653,23.0173007596197,27.0481565080372,19.7638745668813,20.1068167040216,17.7071260116624,19.8863368861503,25.1669434423182,27.6656703839609,32.6591688137162,0,0.228497025219458,0,0,0.193952487167626,0,0.0632365371242573,0,0,0,0,0.166845105716094,0.196558995113203,0.224862112384854,0,0,0,0,0.162135226775035,0,0,0,0,0,0.179397413521912,0,0.739012760666419,0.189491411770485,1.14075483509418,0.509235257325564,0.234690248288502,0.502518772325447,0.714130922658041,1.56106918286239,0.945810864637146,0.664394068946325,0.478364305972461,0.491589944147214,0.518054945597687,1.15719246865209,0,0,0,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.53566332312248,0,0,7.25868541079156,39.8235415019888,5.09839335925461,15.1161778482376,45.0766140616596,41.0469631104274,25.517117279346,23.7754029714763,14.9048829085777,23.5288269733916,22.4386098134429,45.3300016872495,39.191506434311,0,0,0,0,0,0,0,0,0,0.21183207086382,75.8617689309069,0,0,0,0.119372344003136,0.492422699235184,22.7355052571284,0,0,1.44470807574256,0.185194527369712,0,0,0,0,0,0,77.3283200592242,3.16335993581135,10.1659733563424,18.6849239621716,25.5087721137652,29.6973086694802,23.8709893101133,34.3838375817397,35.8605640518121,21.7753155130212,72.0753603180834,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0.25984164595559,0.716106782669926,1.19208812868759,0.240390899039938,0.295379054349154,0.100966449948148,0.15241361331,0,0,0,0.116876902181569,22.8997687451363,0,0,0,1.54551675225752,0.93841237725591,1.28206136987086,26.3673106267251,25.0786052017682,0,0,0,0,0,0,0,0,0,0,0,0,0.341467211508268,0.729320151204882,0.209613162627982,2.5738091183002,3.77819437262746,2.67845574410562,2.24643446714271,2.27427490587418,2.28131369901216,3.39527414494937,2.80924522409647,2.56100609619477,1.7230640686684,2.38146845641537,1.97003354106254,4.05109362973781,1.23625770240992,1.91358596174717,1.37147700954166,1.06485483695602,2.86123427936785,1.59881058295561,2.35273451038327,2.79228206042532,2.0122077016005,2.10455769150274,2.17286582153379,1.68342681497322,2.13543032623513,2.26560309463796,0.409231043169689,2.94379998253335,1.54325288784913,2.99772693525535,2.8071793013449,2.79332370262788,1.3390183244819,3.30887128679273,0 | |||
|short_description=p1@Spdef | |||
}} |
Latest revision as of 03:47, 26 September 2015
Short description: | p1@Spdef |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Spdef_5end |
Coexpression cluster: | MCL_coexpression_mm9:468 |
Association with transcript: | 0bp_to_ENSMUST00000025054, ENSMUST00000114870, NM_013891, uc008bpo.2_5end |
EntrezGene: | Spdef |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.26e-07 | 9 |
epithelial cell of alimentary canal | 2.26e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 4.32e-26 | 47 |
intestine | 6.76e-22 | 31 |
mucosa | 8.03e-13 | 15 |
pancreas | 1.95e-11 | 12 |
intestinal mucosa | 3.92e-11 | 13 |
wall of intestine | 3.92e-11 | 13 |
gastrointestinal system mucosa | 3.92e-11 | 13 |
digestive system | 7.15e-09 | 116 |
digestive tract | 7.15e-09 | 116 |
primitive gut | 7.15e-09 | 116 |
endoderm-derived structure | 1.81e-08 | 118 |
endoderm | 1.81e-08 | 118 |
presumptive endoderm | 1.81e-08 | 118 |
subdivision of digestive tract | 6.54e-08 | 114 |
viscus | 1.60e-07 | 19 |
epithelium of mucosa | 2.26e-07 | 9 |
gastrointestinal system epithelium | 2.26e-07 | 9 |
intestinal epithelium | 2.26e-07 | 9 |
organ component layer | 5.71e-07 | 24 |