FFCP PHASE1:Hg19::chrX:26766039..26766048,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:26766039..26766048,+
|short_description=p1@HMGA1P1
|description=CAGE_peak_1_at_HMGA1P1_5end
|association_with_transcript=-97bp_to_ENST00000374117,ENST00000...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=13321 | |HGNC=13321 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-97bp_to_ENST00000374117,ENST00000415560_5end | |||
|cluster_id=chrX:26766039..26766048,+ | |||
|description=CAGE_peak_1_at_HMGA1P1_5end | |||
|id=chrX:26766039..26766048,+ | |||
|ontology_enrichment_celltype=CL:0000012!1.07e-22!682;CL:0000548!6.27e-22!679;CL:0000004!6.27e-22!679;CL:0000255!6.27e-22!679;CL:0000066!5.55e-20!254;CL:0002321!2.55e-18!248;CL:0000220!1.24e-17!246;CL:0000003!3.45e-16!722;CL:0000144!5.79e-15!625;CL:0002371!6.12e-11!591;CL:0000222!1.49e-09!119;CL:1000449!1.76e-08!16;CL:1000507!9.92e-08!12;CL:1000494!9.92e-08!12;CL:0000071!1.00e-07!18;CL:0002546!1.00e-07!18;CL:0002139!2.48e-07!24;CL:0000063!3.14e-07!578;CL:0002681!4.70e-07!13;CL:0002584!4.70e-07!13;CL:0000115!5.60e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:1000449;3.15e-14;15!CL:0002681;3.37e-12;12!CL:0002584;3.37e-12;12!CL:1000497;3.58e-12;17!CL:0002518;3.58e-12;17!CL:1000507;3.78e-10;10!CL:1000494;3.78e-10;10!CL:1000746;5.11e-08;7!CL:1000612;5.11e-08;7 | |||
|ontology_enrichment_celltype_v019_2=CL:1000449,3.38e-14,15;CL:0002681,3.56e-12,12;CL:0002584,3.56e-12,12;CL:1000497,3.80e-12,17;CL:0002518,3.80e-12,17;CL:1000507,2.64e-10,10;CL:1000494,2.64e-10,10;CL:0002321,9.69e-10,250;CL:0000066,5.65e-08,253;CL:1000746,8.84e-08,7;CL:1000612,8.84e-08,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!8.60e-12!118;UBERON:0000490!9.62e-10!138;UBERON:0004211!1.76e-08!16;UBERON:0001285!1.76e-08!16;UBERON:0007684!1.76e-08!16;UBERON:0003220!1.76e-08!16;UBERON:0004208!1.76e-08!16;UBERON:0001048!3.55e-08!168;UBERON:0005256!5.45e-08!143;UBERON:0002049!8.03e-08!79;UBERON:0007798!8.03e-08!79;UBERON:0009773!9.92e-08!12;UBERON:0001231!9.92e-08!12;UBERON:0004810!9.92e-08!12;UBERON:0001986!1.00e-07!18;UBERON:0004638!1.00e-07!18;UBERON:0004852!1.00e-07!18;UBERON:0000487!1.34e-07!22;UBERON:0000466!1.44e-07!126;UBERON:0006555!1.55e-07!17;UBERON:0005103!1.55e-07!17;UBERON:0000083!1.55e-07!17;UBERON:0009201!1.55e-07!17;UBERON:0004819!1.55e-07!17;UBERON:0006553!1.55e-07!17;UBERON:0003074!1.55e-07!17;UBERON:0003060!1.55e-07!17;UBERON:0000055!4.14e-07!69;UBERON:0001225!4.70e-07!13;UBERON:0008987!4.70e-07!13;UBERON:0003886!7.07e-07!63;UBERON:0001981!8.06e-07!60;UBERON:0007500!8.06e-07!60;UBERON:0004537!8.06e-07!60;UBERON:0006965!8.06e-07!60;UBERON:0003104!8.43e-07!238;UBERON:0009142!8.43e-07!238;UBERON:0000464!9.00e-07!104 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;3.15e-14;15!UBERON:0004819;3.15e-14;15!UBERON:0001285;3.15e-14;15!UBERON:0007684;3.15e-14;15!UBERON:0001225;3.37e-12;12!UBERON:0008987;3.37e-12;12!UBERON:0000353;1.26e-11;15!UBERON:0004211;3.78e-10;10!UBERON:0009773;3.78e-10;10!UBERON:0001231;3.78e-10;10!UBERON:0004810;3.78e-10;10!UBERON:0001851;2.78e-09;15!UBERON:0000074;5.11e-08;7!UBERON:0001229;5.11e-08;7!UBERON:0002113;9.95e-08;24!UBERON:0011143;9.95e-08;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,3.38e-14,15;UBERON:0009773,3.38e-14,15;UBERON:0001231,3.38e-14,15;UBERON:0001285,3.38e-14,15;UBERON:0007684,3.38e-14,15;UBERON:0004208,3.38e-14,15;UBERON:0006555,4.17e-13,16;UBERON:0004819,4.17e-13,16;UBERON:0001225,3.56e-12,12;UBERON:0008987,3.56e-12,12;UBERON:0000353,1.32e-11,15;UBERON:0004810,2.64e-10,10;UBERON:0001851,2.89e-09,15;UBERON:0003914,1.15e-08,117;UBERON:0010532,8.84e-08,7;UBERON:0000074,8.84e-08,7;UBERON:0001229,8.84e-08,7;UBERON:0001230,8.84e-08,7;UBERON:0003220,8.84e-08,7;UBERON:0005749,8.84e-08,7;UBERON:0004199,8.84e-08,7;UBERON:0004209,8.84e-08,7;UBERON:0004198,8.84e-08,7;UBERON:0005177,2.16e-07,101;UBERON:0002113,6.72e-07,26;UBERON:0003918,6.72e-07,26;UBERON:0011143,6.72e-07,26;UBERON:0005095,6.72e-07,26;UBERON:0007687,6.72e-07,26 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0.631719873426831,0,2.94880723801811,2.79120467188971,0.655324116390517,0.263766978228454,1.23766352960047,0.662794751455832,0.672325146451775,3.01347264011988,2.19093027116212,0.487932798790507,0.738726348460727,1.42800483870977,0,0.572471974262113,0.410623275218653,0,0.534893840235659,0.821005894499457,1.25937250101887,0,0,0,2.75826367343678,0.30120591877825,0.369754010166788,0.542270404062111,0.142169232487422,0.293600439334847,0,0,0,0,0,0,0,0.755751887377619,0.242584061187816,0.464858073811369,0,0,0,0,0.47296445977717,0,0,0,0,0.818718450173537,0,0,0.320929027076094,0.639337125799041,0.329851300186716,0,0,0,1.70215567407342,1.24564449799115,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0.790152254325231,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0.328875809207352,0.276350017785848,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.511450247374121,0,0,0.144846518960824,0.795285947051099,0,0.756278537312543,0.886917589850256,0.614843499851882,0.0654895377488563,1.09288586487763,0,0,0,0,0,0,0,1.59009925893364,0.860234595106124,2.42998351125316,2.26123176769604,1.25849830862972,0.825354125820202,0.835979866147242,0.516833518338658,1.42306505074684,0.33472061276467,0.805658634218294,0.760272105718513,0.732186172644509,0.735326160691737,0,1.16089646769304,1.34717623575702,0.788280363383256,3.06633274931766,0.949265659568129,0.916008719652036,0,0,2.18047026071267,0,0,0.264818361626438,0.286836620748814,0.354668382198357,0,0,0,0.622422070799533,0.404132016209064,0.163461903113459,0.302714855289863,0.576175924479999,0.70296429550139,2.49728061464256,1.1409436430889,1.34503812496621,1.05691048779388,0.809364721840658,0.98315564691574,0.61246251376468,0.491337269247072,0.413303124703062,0,0,2.73048408581408,0,1.0100166837244,1.00094815897571,0.277064115484183,0,0,0,0.340296549480063,0.358779271377724,0,0,0.300091096084402,0,0,0.18611685633159,0.337552664482532,0,0,0.0920498986422993,0,0,0.10075209822764,0,0.193260853163297,0.818238361772504,0,2.31750041646231,0.662648841607426,1.51052125730374,1.24393266018445,3.28017106138317,1.82488679537915,0,0.643240938192885,0,1.85747171212792,1.44375896333917,0.354920400119532,0.337169380156203,0.241011029883482,0,0.217879444092406,0.237270619111097,0.134831308160164,0.392442930250692,0,0,5.60967095213783,0.8231480226628,1.47008711385542,0,0.982827216677626,0,0,0.245976877086227,1.71567810298526,0.439001141634502,1.1240175325762,0.301586917234893,0.925884451585296,0.325808305310325,1.03993478527958,2.88662684050547,2.89826012437692,0.352226082707465,0.288732895522148,0,0.190254152234598,0,0.858486162094873,0,0,0,0,0,0.425325291727159,0.358234090811393,0.581267877027924,0,0.492663237895943,0,0.207328115540772,0,0,0.444485260045183,0.381988425558278,0,1.71072446022705,0.719792448923265,0.901029173531752,0.571652865261156,0.224262168690721,0,0.51336800074665,0.129271715757778,3.57656445851882,0,0,0,2.31486636835928,4.25547396069835,2.1313774321288,0,0,0,0,0,0,0.602878754119172,0,0.499864955910285,0,0,0,0,1.14861935834114,0,0.289562613335158,0.205476322550383,0.179060963239896,0.224170287987055,0,0,0.128343036279748,1.01637849688985,0,0.773288812777695,0.335032530668698,1.27587750330633,0,0,0,0.49076596687656,1.50051156317903,1.08506009479894,0,0.713715955188647,0,0,0,0,1.03473071292505,1.32845119707087,0.553107505625109,0.60818530127658,0.195801157462741,0.343143423810856,0,0,0.106727557803444,0.909382714338778,0,0.604780586659361,0,0,0,0,0,0,0,0.462629081407967,0.177561725313127,0.328508624055237,0.519254429183621,0.348631135379878,0.362578348774867,0,0.0920809889358963,0.229628896329213,0.910455840033585,0.131124414959424,2.70719767744447,0.924184045252977,3.13739907670742,5.84556898613043,0.422206515571503,2.27466768141793,1.02056223165909,1.29549549661284,0,1.08378575017541,1.50506932156456,1.27438136522519,3.3243040357149,1.79099803777743,0,0,2.05160100093111,1.31205858279882,1.62689197332152,0.206082023295445,0,0.082509499920588,0.574265537996172,0.650060246036521,0,0.870036464629098,1.07834031980251,0.15350367472613,1.24052915236078,1.28904293841928,0.290033387828457,0.596586391912706,0.0890320356467374,0,0.384380134730212,0,0.2023155617111,0,0,0.6970372701606,0.616067160352178,0.532306030317022,0,0.55597265731176,0.286249773483982,0,0,0,3.32667128704734,1.28381696410176,0.95460974377781,0.78494864019923,0.359744915166629,0.274537029736055,0.235624804691373,1.61745985258653,3.17020642346017,0.421258456238981,1.46290121726877,0,0,0,0,2.26016233240486,1.10273068709225,0.66343897524122,0,0.578775534266688,1.31178950409327,0.202910376962704,0.30982349809975,0,1.72093622644862,0.491245205065606,0.35667105148125,0.709522128141196,0,0,0.379473173765715,1.04980416073495,1.05844323998063,0.670302275535787,0,0.0941438007767792,0,0,0.886860307073351,0.229723400206959,0,0,0,0,0,0,0,0,0.534120355637366,0,0.735120647943095,0.185803175125719,0,0.355709216742071,0.15942627272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| ||
|short_description=p1@HMGA1P1 | |||
}} | }} |
Latest revision as of 19:19, 24 September 2015
Short description: | p1@HMGA1P1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HMGA1P1_5end |
Coexpression cluster: | NA |
Association with transcript: | -97bp_to_ENST00000374117, ENST00000415560_5end |
EntrezGene: | NA |
HGNC: | 13321 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of nephron | 3.38e-14 | 15 |
kidney cortical cell | 3.56e-12 | 12 |
renal cortical epithelial cell | 3.56e-12 | 12 |
kidney cell | 3.80e-12 | 17 |
kidney epithelial cell | 3.80e-12 | 17 |
kidney tubule cell | 2.64e-10 | 10 |
nephron tubule epithelial cell | 2.64e-10 | 10 |
embryonic cell | 9.69e-10 | 250 |
epithelial cell | 5.65e-08 | 253 |
glomerular cell | 8.84e-08 | 7 |
kidney corpuscule cell | 8.84e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 3.38e-14 | 15 |
renal tubule | 3.38e-14 | 15 |
nephron tubule | 3.38e-14 | 15 |
nephron | 3.38e-14 | 15 |
uriniferous tubule | 3.38e-14 | 15 |
nephrogenic mesenchyme | 3.38e-14 | 15 |
excretory tube | 4.17e-13 | 16 |
kidney epithelium | 4.17e-13 | 16 |
cortex of kidney | 3.56e-12 | 12 |
renal parenchyma | 3.56e-12 | 12 |
parenchyma | 1.32e-11 | 15 |
nephron tubule epithelium | 2.64e-10 | 10 |
cortex | 2.89e-09 | 15 |
epithelial tube | 1.15e-08 | 117 |
primitive nephron | 8.84e-08 | 7 |
renal glomerulus | 8.84e-08 | 7 |
renal corpuscle | 8.84e-08 | 7 |
glomerular capsule | 8.84e-08 | 7 |
metanephric mesenchyme | 8.84e-08 | 7 |
glomerular tuft | 8.84e-08 | 7 |
S-shaped body | 8.84e-08 | 7 |
renal vesicle | 8.84e-08 | 7 |
comma-shaped body | 8.84e-08 | 7 |
trunk region element | 2.16e-07 | 101 |
kidney | 6.72e-07 | 26 |
kidney mesenchyme | 6.72e-07 | 26 |
upper urinary tract | 6.72e-07 | 26 |
kidney rudiment | 6.72e-07 | 26 |
kidney field | 6.72e-07 | 26 |