FFCP PHASE1:Mm9::chr18:21119757..21119768,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=67664|HGNC=|MCL_coexpression_id=8|UniProt=Q9D9R0|association_with_transcript=-204bp_to_uc008efa.1_5end|description=CAGE_peak_12_at_Rnf125_5end|id=chr18:21119757..21119768,+|ontology_enrichment_celltype=CL:0000066!3.78e-09!25;CL:0000223!8.28e-09!20;CL:0000181!1.48e-08!5;CL:0000417!1.48e-08!5;CL:0000668!1.48e-08!5;CL:0000412!1.48e-08!5;CL:0000182!1.48e-08!5|ontology_enrichment_celltype_v019_2=CL:0000182,5.67e-14,5;CL:0000057,1.05e-08,1;CL:0000632,1.05e-08,1|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002107!5.73e-18!22;UBERON:0007499!5.73e-18!22;UBERON:0006925!5.73e-18!22;UBERON:0009497!5.73e-18!22;UBERON:0000015!5.73e-18!22;UBERON:0002423!5.73e-18!22;UBERON:0006235!5.73e-18!22;UBERON:0008835!5.73e-18!22;UBERON:0003894!5.73e-18!22;UBERON:0004161!5.73e-18!22;UBERON:0008836!5.73e-18!22;UBERON:0009854!5.90e-17!23;UBERON:0009856!5.90e-17!23;UBERON:0002365!3.54e-15!25;UBERON:0002330!3.54e-15!25;UBERON:0003929!1.26e-12!55;UBERON:0005911!2.32e-09!69;UBERON:0000490!2.72e-09!66;UBERON:0001007!1.79e-08!128;UBERON:0001555!1.79e-08!128;UBERON:0007026!1.79e-08!128;UBERON:0000344!3.21e-08!15;UBERON:0001242!3.39e-08!13;UBERON:0000060!3.39e-08!13;UBERON:0001262!3.39e-08!13;UBERON:0004786!3.39e-08!13;UBERON:0004119!3.47e-08!130;UBERON:0000925!3.47e-08!130;UBERON:0006595!3.47e-08!130;UBERON:0004921!3.70e-08!126;UBERON:0004185!3.70e-08!126;UBERON:0005057!2.56e-07!51|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.43e-39,22;UBERON:0007499,2.43e-39,22;UBERON:0006925,2.43e-39,22;UBERON:0009497,2.43e-39,22;UBERON:0000015,2.43e-39,22;UBERON:0002423,2.43e-39,22;UBERON:0006235,2.43e-39,22;UBERON:0008835,2.43e-39,22;UBERON:0003894,2.43e-39,22;UBERON:0004161,2.43e-39,22;UBERON:0008836,2.43e-39,22;UBERON:0009854,1.33e-37,23;UBERON:0009856,1.33e-37,23;UBERON:0002365,1.53e-34,25;UBERON:0002330,1.53e-34,25;UBERON:0005256,7.48e-19,45;UBERON:0003914,5.15e-18,47;UBERON:0005172,3.03e-17,49;UBERON:0005173,3.03e-17,49;UBERON:0002417,3.03e-17,49;UBERON:0000916,3.03e-17,49;UBERON:0003929,2.86e-15,55;UBERON:0002368,6.37e-14,60;UBERON:0003104,1.12e-13,61;UBERON:0009142,1.12e-13,61;UBERON:0002530,8.83e-13,65;UBERON:0000490,1.42e-12,66;UBERON:0009569,1.42e-12,66;UBERON:0005911,5.51e-12,69;UBERON:0000949,1.91e-11,72;UBERON:0005177,2.41e-10,79;UBERON:0001041,3.34e-10,80;UBERON:0002100,5.89e-09,90;UBERON:0001048,6.31e-07,134;UBERON:0000025,7.65e-07,114;UBERON:0004921,7.65e-07,114|phase1_expression=0,0.348975407639361,0.454999239389536,0.60492842261366,0,0.503637815735669,0.467225281191051,0,0.281577444303333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159992422793407,0,0,0.430761996159075,0.646413698057667,0.570070258369122,0.504060259519861,0.665191531965914,0,0,0,0,0.332469290716985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302904773332736,0.377857800533928,0.289864488701678,4.30211938490693,0.679971333707751,3.77792234146472,3.89865850468601,7.6164570806547,0.421333260395256,0.170430322578058,0,0,0,0,0,0,0,0.253359865475099,0,0.79928715803342,0,0.148442139064825,0,0,0,0,0,0,0.247194967734374,0.144599356919912,0,0,0,0,0,0,0,0,0,0.599902730993408,0,0,0,0,0,0,0,0,0,0,0,4.41927897361595,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0.898819408654221,0.216138049874694,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0.592905254174298,0,0.196558995113203,0,0,0.241177159752417,0,0,1.62135226775035,0.274561413188081,2.87536413054709,1.48856379067401,1.5601883655728,6.06189307073068,7.17589654087649,8.68398338454061,0,0,0.162964976442026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0603129249281559,0.119372344003136,0.164140899745061,0.291480836629851,0,0,0,0,0,0,0,0.169978429993855,0,0,0,0,0,0,0,0,0,0.247960367176008,0.26175594198403,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0,0,0,0,0,0,0,0,0,0,0.116876902181569,0,0,0,0,0,0.375364950902364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25347929989024,0.188626341386076,0,0,0,0,0,0,0,0.294397840268795,0,0,0,0,0.188218760830661,0,0,0,0,0.561142271657738,0,0,0,0,0,0,0,0.214871054048298,0,0,0|short_description=p12@Rnf125}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=67664 | |||
|HGNC= | |||
|MCL_coexpression_id=8 | |||
|TSSclassifier=NA | |||
|UniProt=Q9D9R0 | |||
|association_with_transcript=-204bp_to_uc008efa.1_5end | |||
|cluster_id=chr18:21119757..21119768,+ | |||
|description=CAGE_peak_12_at_Rnf125_5end | |||
|id=chr18:21119757..21119768,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.78e-09!25;CL:0000223!8.28e-09!20;CL:0000181!1.48e-08!5;CL:0000417!1.48e-08!5;CL:0000668!1.48e-08!5;CL:0000412!1.48e-08!5;CL:0000182!1.48e-08!5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,5.67e-14,5;CL:0000057,1.05e-08,1;CL:0000632,1.05e-08,1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!5.73e-18!22;UBERON:0007499!5.73e-18!22;UBERON:0006925!5.73e-18!22;UBERON:0009497!5.73e-18!22;UBERON:0000015!5.73e-18!22;UBERON:0002423!5.73e-18!22;UBERON:0006235!5.73e-18!22;UBERON:0008835!5.73e-18!22;UBERON:0003894!5.73e-18!22;UBERON:0004161!5.73e-18!22;UBERON:0008836!5.73e-18!22;UBERON:0009854!5.90e-17!23;UBERON:0009856!5.90e-17!23;UBERON:0002365!3.54e-15!25;UBERON:0002330!3.54e-15!25;UBERON:0003929!1.26e-12!55;UBERON:0005911!2.32e-09!69;UBERON:0000490!2.72e-09!66;UBERON:0001007!1.79e-08!128;UBERON:0001555!1.79e-08!128;UBERON:0007026!1.79e-08!128;UBERON:0000344!3.21e-08!15;UBERON:0001242!3.39e-08!13;UBERON:0000060!3.39e-08!13;UBERON:0001262!3.39e-08!13;UBERON:0004786!3.39e-08!13;UBERON:0004119!3.47e-08!130;UBERON:0000925!3.47e-08!130;UBERON:0006595!3.47e-08!130;UBERON:0004921!3.70e-08!126;UBERON:0004185!3.70e-08!126;UBERON:0005057!2.56e-07!51 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.43e-39,22;UBERON:0007499,2.43e-39,22;UBERON:0006925,2.43e-39,22;UBERON:0009497,2.43e-39,22;UBERON:0000015,2.43e-39,22;UBERON:0002423,2.43e-39,22;UBERON:0006235,2.43e-39,22;UBERON:0008835,2.43e-39,22;UBERON:0003894,2.43e-39,22;UBERON:0004161,2.43e-39,22;UBERON:0008836,2.43e-39,22;UBERON:0009854,1.33e-37,23;UBERON:0009856,1.33e-37,23;UBERON:0002365,1.53e-34,25;UBERON:0002330,1.53e-34,25;UBERON:0005256,7.48e-19,45;UBERON:0003914,5.15e-18,47;UBERON:0005172,3.03e-17,49;UBERON:0005173,3.03e-17,49;UBERON:0002417,3.03e-17,49;UBERON:0000916,3.03e-17,49;UBERON:0003929,2.86e-15,55;UBERON:0002368,6.37e-14,60;UBERON:0003104,1.12e-13,61;UBERON:0009142,1.12e-13,61;UBERON:0002530,8.83e-13,65;UBERON:0000490,1.42e-12,66;UBERON:0009569,1.42e-12,66;UBERON:0005911,5.51e-12,69;UBERON:0000949,1.91e-11,72;UBERON:0005177,2.41e-10,79;UBERON:0001041,3.34e-10,80;UBERON:0002100,5.89e-09,90;UBERON:0001048,6.31e-07,134;UBERON:0000025,7.65e-07,114;UBERON:0004921,7.65e-07,114 | |||
|phase1_expression=0,0.348975407639361,0.454999239389536,0.60492842261366,0,0.503637815735669,0.467225281191051,0,0.281577444303333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159992422793407,0,0,0.430761996159075,0.646413698057667,0.570070258369122,0.504060259519861,0.665191531965914,0,0,0,0,0.332469290716985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302904773332736,0.377857800533928,0.289864488701678,4.30211938490693,0.679971333707751,3.77792234146472,3.89865850468601,7.6164570806547,0.421333260395256,0.170430322578058,0,0,0,0,0,0,0,0.253359865475099,0,0.79928715803342,0,0.148442139064825,0,0,0,0,0,0,0.247194967734374,0.144599356919912,0,0,0,0,0,0,0,0,0,0.599902730993408,0,0,0,0,0,0,0,0,0,0,0,4.41927897361595,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0.898819408654221,0.216138049874694,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0.592905254174298,0,0.196558995113203,0,0,0.241177159752417,0,0,1.62135226775035,0.274561413188081,2.87536413054709,1.48856379067401,1.5601883655728,6.06189307073068,7.17589654087649,8.68398338454061,0,0,0.162964976442026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0603129249281559,0.119372344003136,0.164140899745061,0.291480836629851,0,0,0,0,0,0,0,0.169978429993855,0,0,0,0,0,0,0,0,0,0.247960367176008,0.26175594198403,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0,0,0,0,0,0,0,0,0,0,0.116876902181569,0,0,0,0,0,0.375364950902364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25347929989024,0.188626341386076,0,0,0,0,0,0,0,0.294397840268795,0,0,0,0,0.188218760830661,0,0,0,0,0.561142271657738,0,0,0,0,0,0,0,0.214871054048298,0,0,0 | |||
|short_description=p12@Rnf125 | |||
}} |
Latest revision as of 02:22, 27 September 2015
Short description: | p12@Rnf125 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_Rnf125_5end |
Coexpression cluster: | MCL_coexpression_mm9:8 |
Association with transcript: | -204bp_to_uc008efa.1_5end |
EntrezGene: | Rnf125 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 5.67e-14 | 5 |
fibroblast | 1.05e-08 | 1 |
hepatic stellate cell | 1.05e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
liver | 2.43e-39 | 22 |
epithelial sac | 2.43e-39 | 22 |
digestive gland | 2.43e-39 | 22 |
epithelium of foregut-midgut junction | 2.43e-39 | 22 |
anatomical boundary | 2.43e-39 | 22 |
hepatobiliary system | 2.43e-39 | 22 |
foregut-midgut junction | 2.43e-39 | 22 |
hepatic diverticulum | 2.43e-39 | 22 |
liver primordium | 2.43e-39 | 22 |
septum transversum | 2.43e-39 | 22 |
liver bud | 2.43e-39 | 22 |
digestive tract diverticulum | 1.33e-37 | 23 |
sac | 1.33e-37 | 23 |
exocrine gland | 1.53e-34 | 25 |
exocrine system | 1.53e-34 | 25 |
trunk mesenchyme | 7.48e-19 | 45 |
epithelial tube | 5.15e-18 | 47 |
abdomen element | 3.03e-17 | 49 |
abdominal segment element | 3.03e-17 | 49 |
abdominal segment of trunk | 3.03e-17 | 49 |
abdomen | 3.03e-17 | 49 |
gut epithelium | 2.86e-15 | 55 |
endocrine gland | 6.37e-14 | 60 |
mesenchyme | 1.12e-13 | 61 |
entire embryonic mesenchyme | 1.12e-13 | 61 |
gland | 8.83e-13 | 65 |
unilaminar epithelium | 1.42e-12 | 66 |
subdivision of trunk | 1.42e-12 | 66 |
endo-epithelium | 5.51e-12 | 69 |
endocrine system | 1.91e-11 | 72 |
trunk region element | 2.41e-10 | 79 |
foregut | 3.34e-10 | 80 |
trunk | 5.89e-09 | 90 |
primordium | 6.31e-07 | 134 |
tube | 7.65e-07 | 114 |
subdivision of digestive tract | 7.65e-07 | 114 |