FFCP PHASE1:Mm9::chr13:74908074..74908117,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr13:74908074..74908117,-
|short_description=p3@Cast
|description=CAGE_peak_3_at_Cast_5end
|association_with_transcript=0bp_to_ENSMUST00000163477,uc007rfn.1,uc...") |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=12380 | |EntrezGene=12380 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2872 | |||
|TSSclassifier=NA | |||
|UniProt=Q8CE04,Q8C281,Q921U7 | |UniProt=Q8CE04,Q8C281,Q921U7 | ||
|association_with_transcript=0bp_to_ENSMUST00000163477,uc007rfn.1,uc007rfo.1,uc011zbx.1_5end | |||
|cluster_id=chr13:74908074..74908117,- | |||
|description=CAGE_peak_3_at_Cast_5end | |||
|id=chr13:74908074..74908117,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!6.43e-11!47;UBERON:0000926!2.68e-10!193;UBERON:0004120!2.68e-10!193;UBERON:0006603!2.68e-10!193;UBERON:0004119!5.36e-09!130;UBERON:0000925!5.36e-09!130;UBERON:0006595!5.36e-09!130;UBERON:0004921!1.12e-08!126;UBERON:0004185!1.12e-08!126;UBERON:0003104!1.23e-08!131;UBERON:0009142!1.23e-08!131;UBERON:0001007!1.46e-08!128;UBERON:0001555!1.46e-08!128;UBERON:0007026!1.46e-08!128;UBERON:0000077!3.69e-08!97;UBERON:0004872!1.33e-07!33;UBERON:0001041!4.05e-07!92;UBERON:0009569!4.54e-07!66;UBERON:0002107!4.82e-07!22;UBERON:0007499!4.82e-07!22;UBERON:0006925!4.82e-07!22;UBERON:0009497!4.82e-07!22;UBERON:0000015!4.82e-07!22;UBERON:0002423!4.82e-07!22;UBERON:0006235!4.82e-07!22;UBERON:0008835!4.82e-07!22;UBERON:0003894!4.82e-07!22;UBERON:0004161!4.82e-07!22;UBERON:0008836!4.82e-07!22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.80e-11,118;UBERON:0000925,1.80e-11,118;UBERON:0006595,1.80e-11,118;UBERON:0004921,3.80e-11,114;UBERON:0001007,5.52e-11,116;UBERON:0001555,5.52e-11,116;UBERON:0007026,5.52e-11,116;UBERON:0003914,6.39e-11,47;UBERON:0001041,7.67e-10,80;UBERON:0004872,1.33e-07,33;UBERON:0001048,4.05e-07,134;UBERON:0009569,4.52e-07,66;UBERON:0002107,4.80e-07,22;UBERON:0007499,4.80e-07,22;UBERON:0006925,4.80e-07,22;UBERON:0009497,4.80e-07,22;UBERON:0000015,4.80e-07,22;UBERON:0002423,4.80e-07,22;UBERON:0006235,4.80e-07,22;UBERON:0008835,4.80e-07,22;UBERON:0003894,4.80e-07,22;UBERON:0004161,4.80e-07,22;UBERON:0008836,4.80e-07,22 | |||
|phase1_expression=8.48788889655408,13.9590163055744,14.5599756604652,11.4936400296595,14.5259761684441,6.5472916045637,4.43864017131499,52.9405626110463,26.18670232021,21.2998718953014,5.82141091966717,3.82906363177615,34.4113467161724,27.4500063595652,35.3096347524602,45.5569351627108,57.364074006508,7.72882305127682,10.0093536532189,11.0341309467488,6.54833334163237,2.6808556824239,4.17919662622297,9.11956809922418,10.782236210157,14.9300310669905,7.75371593086335,11.8509177977239,18.4322716872683,4.78857246543868,11.7517170647311,3.81018404075779,4.92051830067656,0,6.64358725427932,4.98703936075477,6.12508068787107,31.808403936005,13.2827008569046,12.0410461113974,41.764435650202,30.0540013381716,17.4783727091215,11.5825072537531,10.8473316404881,9.17733760808408,1.56478268869608,0.436050312760893,1.09843091367236,3.69416808241138,1.67983705950435,0,7.04686945442493,21.035502118329,19.1573465511204,12.8629718017974,6.87680255853016,15.9858348606007,0.202316460859598,0,0,2.71075625655306,0.889294796111139,0.449949858640699,0.988866362566974,0,0,0.768436610643109,0.311068836925433,0,0.420649922702764,1.42825492201902,0.441737081903227,0.244981598429908,0.0958454710182364,0,4.40463523997555,6.76742891851495,5.22262213071228,0.263772575460388,0.182975287204819,0.52091337055676,6.70039197603314,9.00420176050688,4.43114918552749,1.76777151284201,2.27794689278565,1.1183966749518,9.92013132664711,12.0914496170857,21.4499721639242,6.88339101585109,59.1575060325743,15.6513925574967,19.4932925234301,19.7131830322828,24.9991067834518,4.09032774187339,2.33807404142582,1.7666978725517,6.90132756905734,5.13305909657271,10.1922095882658,7.11066703153331,53.0403050477475,69.1672432747019,41.4530044912122,18.7261562739258,22.2686579936568,14.1020032111584,6.7659277438793,5.1759131313064,10.6083128737787,9.64624899536784,15.521709341913,9.17366116706631,55.1244778047654,28.0522752424629,19.4614321428972,22.3238252927425,30.6969710659947,32.4866419600599,1.86391761218122,5.27005434620785,6.91174132484402,10.2182822083437,6.58983184782562,1.79970819298022,7.11593271609162,11.6836698735762,3.66000482254901,0.502617408451458,6.43149984711423,4.09144731728529,7.68815764870372,3.89379031362618,13.4427960282417,25.0058010926287,20.4705434331277,17.4666740385773,4.16385417480652,3.67843367093557,7.74267158163002,8.28876498096433,9.86529237694254,6.66191345481219,5.90320864726292,7.76110112217047,3.66465587985832,6.42960672570586,6.68614271823006,5.91828477554452,17.5169767012127,21.9398864908965,31.2788847340074,8.35943920637671,5.61770549850588,2.83082697826187,3.9782889915383,18.2270679831242,20.1692411583743,22.5077576826269,21.7805156738393,23.6117078096885,24.9912722877553,21.1605889722871,19.3156849007726,23.8201298429026,20.4054213892716,19.5359282254123,19.8618583387347,18.2749984281665,20.8572609526498,23.3519168643047,2.94405927989778,1.64647379806855,25.1118275067686,21.6849464664106,3.41261200856374,5.80591679651096,9.79392706047909,9.68080918192044,14.4545728499166,14.0766963323294,18.506633400236,26.0224348463937,20.6094871216221,24.6706025331027,25.7352594997239,15.2799299471218,31.3400172318307,25.490082976559,1.89667900953082,8.22589290790047,9.01661885384643,6.72049381889537,6.59438456369928,10.7307804432187,11.5090497566148,15.4990655378582,18.6828486131236,17.7691916047393,13.933273473096,24.1925403288336,20.0490175015467,28.1077640481067,36.717681971319,30.6294992885569,23.1709525121092,23.0156909960649,32.102774901457,23.612281534175,30.1913233707445,23.8170206507842,17.1620720213008,14.9021537988796,17.5809465251474,28.4641677604387,19.2143317773269,4.16881105895066,6.19266910479698,5.09235257325564,5.63256595892405,6.70025029767263,7.37935286746643,17.1717610114863,12.9260818167077,17.0527811029557,11.799652880654,18.1888279334469,14.3328534948693,21.1187625529007,1.50791283939272,0.54390568381871,7.86822836830458,6.62248191131358,17.3394637186815,14.417037450841,8.19674726883377,34.5885170269991,3.15508219416257,2.73307121007647,3.44677436372478,4.77937595905104,3.34198011123591,2.83076530788832,4.45291771842384,7.01414058987149,5.53402889125133,7.06906896127976,11.7810270722863,6.58842733568844,13.845391545054,12.7026994688852,7.96470830039777,7.28341908464944,3.32555912661226,9.05304382828311,1.77181135728464,5.84126781093462,14.9888410037568,5.45300594216258,11.4079161083111,3.47640433729398,4.21674434299995,11.3449097573006,13.9580238359053,4.86164953884538,2.32845630808958,4.07240366560025,5.85222771019503,5.70780216326626,5.10101963866575,4.87143918583359,14.3149741918863,26.0553447162499,7.93902232997863,54.4124634706884,43.4339307811986,32.0864760617789,42.9740438411291,46.1235928283622,27.9821603164657,19.284231409093,30.4150167820178,8.46186158649212,25.0012611949111,59.5244324134824,60.00876596953,48.9585290661958,28.5563762389677,24.7714070612875,28.7455945513201,27.6854479224383,4.58687190692646,10.3692928234693,18.3609079397062,27.1814784818809,25.9851450857951,27.3774623161186,24.6307298061501,28.0078857922912,28.774524070778,21.7468759580424,5.07323644815771,7.92437694033088,6.28742263736971,8.75030347548214,8.91202781996345,13.0096216627899,13.378725205616,9.50492009360836,5.55754525456268,4.59009829569411,6.91272015018877,7.58426689507628,6.28448167399509,5.75181360123033,4.93699127315621,7.87717460936918,8.54329825559439,11.418567704397,13.7351260272357,15.2459339421703,13.10757074466,11.5950112907367,12.8644402576473,14.1431407211284,16.4796432076012,94.7733003511584,23.5305110576509,30.5027112472217,30.5550001782623,29.3648182928929,15.2022805115457,14.1026750685794,60.6662512793756,12.0377304968487,2.25900737046827,1.84130094602871,0,0.859265911718438,2.74033007908257,0.755393897389701,2.70009000092722,4.5032120322422,5.43770890781046,2.07104124700728,6.2272408550506,3.59122386060928,5.63420898988643,13.6139761558245,12.5767897576789,11.3982975239009,9.33436256766784,8.85950746127245,8.3438994493872,10.1078884705519,11.1530891951705,11.8834595073228,13.0161695383137,11.4605022804716,12.6932386391905,12.859929664643,11.4725482685407,13.6965546529231,11.5384052224926,9.86232764900462,13.0290315906458,13.665637074269,14.0677352068919,11.046327664057,11.7636725519163,11.253742849593,9.51225458938417,16.0472523977084,13.9878237261238,10.661703161497,9.6094364680581,10.4414751318097,13.0953933814301,11.4653262477615,13.3105561576988,5.24602213669686,11.9305120307158,21.2722343507815,23.1458881803301,20.2944105589954,21.5637087126992 | |phase1_expression=8.48788889655408,13.9590163055744,14.5599756604652,11.4936400296595,14.5259761684441,6.5472916045637,4.43864017131499,52.9405626110463,26.18670232021,21.2998718953014,5.82141091966717,3.82906363177615,34.4113467161724,27.4500063595652,35.3096347524602,45.5569351627108,57.364074006508,7.72882305127682,10.0093536532189,11.0341309467488,6.54833334163237,2.6808556824239,4.17919662622297,9.11956809922418,10.782236210157,14.9300310669905,7.75371593086335,11.8509177977239,18.4322716872683,4.78857246543868,11.7517170647311,3.81018404075779,4.92051830067656,0,6.64358725427932,4.98703936075477,6.12508068787107,31.808403936005,13.2827008569046,12.0410461113974,41.764435650202,30.0540013381716,17.4783727091215,11.5825072537531,10.8473316404881,9.17733760808408,1.56478268869608,0.436050312760893,1.09843091367236,3.69416808241138,1.67983705950435,0,7.04686945442493,21.035502118329,19.1573465511204,12.8629718017974,6.87680255853016,15.9858348606007,0.202316460859598,0,0,2.71075625655306,0.889294796111139,0.449949858640699,0.988866362566974,0,0,0.768436610643109,0.311068836925433,0,0.420649922702764,1.42825492201902,0.441737081903227,0.244981598429908,0.0958454710182364,0,4.40463523997555,6.76742891851495,5.22262213071228,0.263772575460388,0.182975287204819,0.52091337055676,6.70039197603314,9.00420176050688,4.43114918552749,1.76777151284201,2.27794689278565,1.1183966749518,9.92013132664711,12.0914496170857,21.4499721639242,6.88339101585109,59.1575060325743,15.6513925574967,19.4932925234301,19.7131830322828,24.9991067834518,4.09032774187339,2.33807404142582,1.7666978725517,6.90132756905734,5.13305909657271,10.1922095882658,7.11066703153331,53.0403050477475,69.1672432747019,41.4530044912122,18.7261562739258,22.2686579936568,14.1020032111584,6.7659277438793,5.1759131313064,10.6083128737787,9.64624899536784,15.521709341913,9.17366116706631,55.1244778047654,28.0522752424629,19.4614321428972,22.3238252927425,30.6969710659947,32.4866419600599,1.86391761218122,5.27005434620785,6.91174132484402,10.2182822083437,6.58983184782562,1.79970819298022,7.11593271609162,11.6836698735762,3.66000482254901,0.502617408451458,6.43149984711423,4.09144731728529,7.68815764870372,3.89379031362618,13.4427960282417,25.0058010926287,20.4705434331277,17.4666740385773,4.16385417480652,3.67843367093557,7.74267158163002,8.28876498096433,9.86529237694254,6.66191345481219,5.90320864726292,7.76110112217047,3.66465587985832,6.42960672570586,6.68614271823006,5.91828477554452,17.5169767012127,21.9398864908965,31.2788847340074,8.35943920637671,5.61770549850588,2.83082697826187,3.9782889915383,18.2270679831242,20.1692411583743,22.5077576826269,21.7805156738393,23.6117078096885,24.9912722877553,21.1605889722871,19.3156849007726,23.8201298429026,20.4054213892716,19.5359282254123,19.8618583387347,18.2749984281665,20.8572609526498,23.3519168643047,2.94405927989778,1.64647379806855,25.1118275067686,21.6849464664106,3.41261200856374,5.80591679651096,9.79392706047909,9.68080918192044,14.4545728499166,14.0766963323294,18.506633400236,26.0224348463937,20.6094871216221,24.6706025331027,25.7352594997239,15.2799299471218,31.3400172318307,25.490082976559,1.89667900953082,8.22589290790047,9.01661885384643,6.72049381889537,6.59438456369928,10.7307804432187,11.5090497566148,15.4990655378582,18.6828486131236,17.7691916047393,13.933273473096,24.1925403288336,20.0490175015467,28.1077640481067,36.717681971319,30.6294992885569,23.1709525121092,23.0156909960649,32.102774901457,23.612281534175,30.1913233707445,23.8170206507842,17.1620720213008,14.9021537988796,17.5809465251474,28.4641677604387,19.2143317773269,4.16881105895066,6.19266910479698,5.09235257325564,5.63256595892405,6.70025029767263,7.37935286746643,17.1717610114863,12.9260818167077,17.0527811029557,11.799652880654,18.1888279334469,14.3328534948693,21.1187625529007,1.50791283939272,0.54390568381871,7.86822836830458,6.62248191131358,17.3394637186815,14.417037450841,8.19674726883377,34.5885170269991,3.15508219416257,2.73307121007647,3.44677436372478,4.77937595905104,3.34198011123591,2.83076530788832,4.45291771842384,7.01414058987149,5.53402889125133,7.06906896127976,11.7810270722863,6.58842733568844,13.845391545054,12.7026994688852,7.96470830039777,7.28341908464944,3.32555912661226,9.05304382828311,1.77181135728464,5.84126781093462,14.9888410037568,5.45300594216258,11.4079161083111,3.47640433729398,4.21674434299995,11.3449097573006,13.9580238359053,4.86164953884538,2.32845630808958,4.07240366560025,5.85222771019503,5.70780216326626,5.10101963866575,4.87143918583359,14.3149741918863,26.0553447162499,7.93902232997863,54.4124634706884,43.4339307811986,32.0864760617789,42.9740438411291,46.1235928283622,27.9821603164657,19.284231409093,30.4150167820178,8.46186158649212,25.0012611949111,59.5244324134824,60.00876596953,48.9585290661958,28.5563762389677,24.7714070612875,28.7455945513201,27.6854479224383,4.58687190692646,10.3692928234693,18.3609079397062,27.1814784818809,25.9851450857951,27.3774623161186,24.6307298061501,28.0078857922912,28.774524070778,21.7468759580424,5.07323644815771,7.92437694033088,6.28742263736971,8.75030347548214,8.91202781996345,13.0096216627899,13.378725205616,9.50492009360836,5.55754525456268,4.59009829569411,6.91272015018877,7.58426689507628,6.28448167399509,5.75181360123033,4.93699127315621,7.87717460936918,8.54329825559439,11.418567704397,13.7351260272357,15.2459339421703,13.10757074466,11.5950112907367,12.8644402576473,14.1431407211284,16.4796432076012,94.7733003511584,23.5305110576509,30.5027112472217,30.5550001782623,29.3648182928929,15.2022805115457,14.1026750685794,60.6662512793756,12.0377304968487,2.25900737046827,1.84130094602871,0,0.859265911718438,2.74033007908257,0.755393897389701,2.70009000092722,4.5032120322422,5.43770890781046,2.07104124700728,6.2272408550506,3.59122386060928,5.63420898988643,13.6139761558245,12.5767897576789,11.3982975239009,9.33436256766784,8.85950746127245,8.3438994493872,10.1078884705519,11.1530891951705,11.8834595073228,13.0161695383137,11.4605022804716,12.6932386391905,12.859929664643,11.4725482685407,13.6965546529231,11.5384052224926,9.86232764900462,13.0290315906458,13.665637074269,14.0677352068919,11.046327664057,11.7636725519163,11.253742849593,9.51225458938417,16.0472523977084,13.9878237261238,10.661703161497,9.6094364680581,10.4414751318097,13.0953933814301,11.4653262477615,13.3105561576988,5.24602213669686,11.9305120307158,21.2722343507815,23.1458881803301,20.2944105589954,21.5637087126992 | ||
|short_description=p3@Cast | |||
}} | }} |
Latest revision as of 22:34, 1 October 2015
Short description: | p3@Cast |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Cast_5end |
Coexpression cluster: | MCL_coexpression_mm9:2872 |
Association with transcript: | 0bp_to_ENSMUST00000163477, uc007rfn.1, uc007rfo.1, uc011zbx.1_5end |
EntrezGene: | Cast |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.80e-11 | 118 |
endoderm | 1.80e-11 | 118 |
presumptive endoderm | 1.80e-11 | 118 |
subdivision of digestive tract | 3.80e-11 | 114 |
digestive system | 5.52e-11 | 116 |
digestive tract | 5.52e-11 | 116 |
primitive gut | 5.52e-11 | 116 |
epithelial tube | 6.39e-11 | 47 |
foregut | 7.67e-10 | 80 |
splanchnic layer of lateral plate mesoderm | 1.33e-07 | 33 |
primordium | 4.05e-07 | 134 |
subdivision of trunk | 4.52e-07 | 66 |
liver | 4.80e-07 | 22 |
epithelial sac | 4.80e-07 | 22 |
digestive gland | 4.80e-07 | 22 |
epithelium of foregut-midgut junction | 4.80e-07 | 22 |
anatomical boundary | 4.80e-07 | 22 |
hepatobiliary system | 4.80e-07 | 22 |
foregut-midgut junction | 4.80e-07 | 22 |
hepatic diverticulum | 4.80e-07 | 22 |
liver primordium | 4.80e-07 | 22 |
septum transversum | 4.80e-07 | 22 |
liver bud | 4.80e-07 | 22 |