Personal tools

UBERON:0002105: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 13: Line 13:
|located_in=
|located_in=
|name=vestibulo-auditory system
|name=vestibulo-auditory system
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=
|part_of=

Latest revision as of 17:26, 12 September 2014

Name:vestibulo-auditory system
Namespace:FANTOM
Definition:"A sensory system for the sense of hearing[WP]." [Wikipedia:Auditory_system]
Xrefs:
links:

AAO:0000631
FMA:7192
FMA:78500
[1]
[2]
MA:0002443
ncithesaurus:Auditory_System
NIF_GrossAnatomy:nlx_anat_090817
OpenCyc:Mx4rvViwtJwpEbGdrcN5Y29ycA
TAO:0001138
XAO:0003195

ZFA:0001138
Synonyms: "auditory organ system" EXACT []
"auditory system" RELATED []
"auditory/vestibular system" RELATED []
"vestibuloauditory system" EXACT []
"vestibuloauditory system" RELATED []
Comments:Auditory system is general anatomical term in FMA
Alt_id: UBERON:FMA_7192-MA_0002443
Subset: functional_classification
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001032(sensory system)



Children

part of:UBERON:0001690 (ear),UBERON:0002827 (vestibulocochlear ganglion),UBERON:0004681 (vestibular system),UBERON:0016490 (auditory system)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 11959-126C6 (Neurons - spiral ganglion, pool1)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002105 (vestibulo-auditory system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_c61890a629f48235895cf0426ce3701cp2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_c61890a629f48235895cf0426ce3701cp4@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_c61890a629f48235895cf0426ce3701cp@chr14:102297728..102297742, +
1.87e-86FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_c61890a629f48235895cf0426ce3701cp@chr9:50968647..50968668, -
1.87e-86FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_c61890a629f48235895cf0426ce3701cp@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_c61890a629f48235895cf0426ce3701cp4@Chrna10
1.87e-86FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_c61890a629f48235895cf0426ce3701cp5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_c61890a629f48235895cf0426ce3701cp1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_c61890a629f48235895cf0426ce3701cp@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_c61890a629f48235895cf0426ce3701cp@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_c61890a629f48235895cf0426ce3701cp@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_c61890a629f48235895cf0426ce3701cp3@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_c61890a629f48235895cf0426ce3701cp11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_c61890a629f48235895cf0426ce3701cp@chr8:13414266..13414279, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257454..78257465,+#_c61890a629f48235895cf0426ce3701cp@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_c61890a629f48235895cf0426ce3701cp@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_c61890a629f48235895cf0426ce3701cp1@Tomt
1.87e-86FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_c61890a629f48235895cf0426ce3701cp10@Otof
1.87e-86FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_c61890a629f48235895cf0426ce3701cp@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_c61890a629f48235895cf0426ce3701cp@chr8:13414289..13414295, +
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_c61890a629f48235895cf0426ce3701cp@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_c61890a629f48235895cf0426ce3701cp@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_c61890a629f48235895cf0426ce3701cp11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_c61890a629f48235895cf0426ce3701cp@chr2:73232344..73232356, -
1.87e-86FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_c61890a629f48235895cf0426ce3701cp2@Espnl
1.87e-86FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_c61890a629f48235895cf0426ce3701cp10@Sec11a
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_c61890a629f48235895cf0426ce3701cp@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_c61890a629f48235895cf0426ce3701cp@chr3:31585340..31585360, +
1.87e-86FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_c61890a629f48235895cf0426ce3701cp@chr13:58283583..58283607, -
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_c61890a629f48235895cf0426ce3701cp@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_c61890a629f48235895cf0426ce3701cp@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_c61890a629f48235895cf0426ce3701cp@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_c61890a629f48235895cf0426ce3701cp@chr2:170417150..170417155, -
1.87e-86FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_c61890a629f48235895cf0426ce3701cp1@Kncn
1.87e-86FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_c61890a629f48235895cf0426ce3701cp7@A730017C20Rik
1.87e-86FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_c61890a629f48235895cf0426ce3701cp@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_c61890a629f48235895cf0426ce3701cp3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_c61890a629f48235895cf0426ce3701cp3@Strc
1.87e-86FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_c61890a629f48235895cf0426ce3701cp11@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_c61890a629f48235895cf0426ce3701cp@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_c61890a629f48235895cf0426ce3701cp@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_c61890a629f48235895cf0426ce3701cp15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_c61890a629f48235895cf0426ce3701cp41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_c61890a629f48235895cf0426ce3701cp2@Fscn2
1.87e-86FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_c61890a629f48235895cf0426ce3701cp2@Slc26a5
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_c61890a629f48235895cf0426ce3701cp1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_c61890a629f48235895cf0426ce3701cp@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_c61890a629f48235895cf0426ce3701cp@chr17:13983179..13983190, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_c61890a629f48235895cf0426ce3701cp@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_c61890a629f48235895cf0426ce3701cp3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207983..42207995,-#_c61890a629f48235895cf0426ce3701cp3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_c61890a629f48235895cf0426ce3701cp@chr5:144115382..144115389, +
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_c61890a629f48235895cf0426ce3701cp@chr2:73232344..73232356, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_c61890a629f48235895cf0426ce3701cp@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_c61890a629f48235895cf0426ce3701cp@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_c61890a629f48235895cf0426ce3701cp@chr16:93971367..93971379, -
1.87e-86FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_c61890a629f48235895cf0426ce3701cp@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_c61890a629f48235895cf0426ce3701cp3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_c61890a629f48235895cf0426ce3701cp1@Otog
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_c61890a629f48235895cf0426ce3701cp@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_c61890a629f48235895cf0426ce3701cp@chr9:42207375..42207384, -
1.87e-86FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_c61890a629f48235895cf0426ce3701cp@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_c61890a629f48235895cf0426ce3701cp2@Strc
1.87e-86FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_c61890a629f48235895cf0426ce3701cp@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_c61890a629f48235895cf0426ce3701cp@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_c61890a629f48235895cf0426ce3701cp@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_c61890a629f48235895cf0426ce3701cp@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_c61890a629f48235895cf0426ce3701cp1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_c61890a629f48235895cf0426ce3701cp@chr5:72652660..72652667, +
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_c61890a629f48235895cf0426ce3701cp@chr13:58283583..58283607, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_c61890a629f48235895cf0426ce3701cp@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_c61890a629f48235895cf0426ce3701cp1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_c61890a629f48235895cf0426ce3701cp@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_c61890a629f48235895cf0426ce3701cp@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_c61890a629f48235895cf0426ce3701cp@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_c61890a629f48235895cf0426ce3701cp3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_c61890a629f48235895cf0426ce3701cp@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_c61890a629f48235895cf0426ce3701cp4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_c61890a629f48235895cf0426ce3701cp@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_c61890a629f48235895cf0426ce3701cp@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_c61890a629f48235895cf0426ce3701cp7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_c61890a629f48235895cf0426ce3701cp@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_c61890a629f48235895cf0426ce3701cp@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_c61890a629f48235895cf0426ce3701cp9@Otof
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_c61890a629f48235895cf0426ce3701cp@chr12:109905468..109905474, +
1.87e-86FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_c61890a629f48235895cf0426ce3701cp@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_c61890a629f48235895cf0426ce3701cp18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_c61890a629f48235895cf0426ce3701cp@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_c61890a629f48235895cf0426ce3701cp@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_c61890a629f48235895cf0426ce3701cp@chr7:139597684..139597691, +
1.87e-86FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_c61890a629f48235895cf0426ce3701cp41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_c61890a629f48235895cf0426ce3701cp6@Jag1
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_c61890a629f48235895cf0426ce3701cp@chr18:38104702..38104718, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_c61890a629f48235895cf0426ce3701cp3@Otogl
1.87e-86FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_c61890a629f48235895cf0426ce3701cp@chr17:27252925..27252939, +
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_c61890a629f48235895cf0426ce3701cp@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_c61890a629f48235895cf0426ce3701cp@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_c61890a629f48235895cf0426ce3701cp@chr15:103146966..103146971, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_c61890a629f48235895cf0426ce3701cp@chr6:113251570..113251578, +
1.87e-86FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_c61890a629f48235895cf0426ce3701cp@chr7:27964761..27964768, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "The sensory system used for balance and hearing.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002105&oldid=3277374"