UBERON:0002529: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 14: | Line 14: | ||
|located_in= | |located_in= | ||
|name=limb segment | |name=limb segment | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002101 | |part_of=UBERON:0002101 | ||
Latest revision as of 17:33, 12 September 2014
| Name: | limb segment | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A major subdivision of a mature or developing limb, including both skeletal elements (or the mesenchyme that gives rise to the skeletal elements) and associated tissues, such as muscle, connective tissue, integument. Examples: autopod region, zeugopod region, stylopod region, metapodial region, arm region. Excludes the limb girdles." [UBERON:cjm] | ||
| Xrefs: |
| ||
| Synonyms: |
"free limb segment" EXACT [FMA:241863] "limb region" EXACT [] "region of limb" EXACT [] "segment of limb" EXACT [] "subdivision of limb" EXACT [] | ||
| Comments: | note FMA has both limb segment and free limb segment, the former includes the girdles. Note that MA uses the term more generally and includes A,S,Z,S+Z(arm/leg), whereas FMA is just A,S,Z | ||
| Alt_id: | UBERON:MA_0002889-FMA_9661 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0010538(paired limb/fin segment) |
|---|---|
| disjoint_from: | UBERON:0010912(subdivision of skeleton) |
| part_of: | UBERON:0002101(limb) |
Children
| is a: | UBERON:0002470 (autopod region),UBERON:0002471 (zeugopod),UBERON:0002472 (stylopod),UBERON:0008784 (lower limb segment),UBERON:0008785 (upper limb segment),UBERON:0008837 (palmar/plantar part of autopod),UBERON:0009551 (distal segment of digit),UBERON:0012139 (segment of autopod) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10264-104D3
- 10267-104D6
- 10273-104E3
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
- 10301-104H4 (Fingernail (including nail plate, eponychium and hyponychium), donor2)
- 10310-104I4
... further results Mouse (Mus musculus)
- 10264-104D3
- 10267-104D6
- 10273-104E3
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
- 10301-104H4 (Fingernail (including nail plate, eponychium and hyponychium), donor2)
- 10310-104I4
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002529 (limb segment), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_4dcbc07311bb42ea90c52096ea0038c7 | p@chr2:179396370..179396375, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_4dcbc07311bb42ea90c52096ea0038c7 | p@chr22:25535147..25535150, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_4dcbc07311bb42ea90c52096ea0038c7 | p@chr4:85166508..85166512, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_4dcbc07311bb42ea90c52096ea0038c7 | p@chr4:85166508..85166512, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_4dcbc07311bb42ea90c52096ea0038c7 | p@chr7:128483294..128483304, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_4dcbc07311bb42ea90c52096ea0038c7 | p@chr7:128483294..128483304, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_4dcbc07311bb42ea90c52096ea0038c7 | p@chr10:97176812..97176813, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_4dcbc07311bb42ea90c52096ea0038c7 | p@chr2:179396370..179396375, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_4dcbc07311bb42ea90c52096ea0038c7 | p@chr11:3691037..3691040, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_4dcbc07311bb42ea90c52096ea0038c7 | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_4dcbc07311bb42ea90c52096ea0038c7 | p@chr10:97176812..97176813, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_4dcbc07311bb42ea90c52096ea0038c7 | p@chr2:76859417..76859418, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_4dcbc07311bb42ea90c52096ea0038c7 | p@chr2:76859417..76859418, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_4dcbc07311bb42ea90c52096ea0038c7 | p@chr11:3691037..3691040, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_4dcbc07311bb42ea90c52096ea0038c7 | p@chr10:79759687..79759690, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_4dcbc07311bb42ea90c52096ea0038c7 | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_4dcbc07311bb42ea90c52096ea0038c7 | p@chr22:25535147..25535150, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_4dcbc07311bb42ea90c52096ea0038c7 | p@chr10:79759687..79759690, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_455ae255a2d15b228d149a20ea6bf841 | p@chr5:175125123..175125125, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_455ae255a2d15b228d149a20ea6bf841 | p@chr5:175125123..175125125, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_455ae255a2d15b228d149a20ea6bf841 | p77@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr8:144542829..144542857, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_455ae255a2d15b228d149a20ea6bf841 | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr2:179399371..179399376, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_455ae255a2d15b228d149a20ea6bf841 | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_455ae255a2d15b228d149a20ea6bf841 | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_455ae255a2d15b228d149a20ea6bf841 | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_455ae255a2d15b228d149a20ea6bf841 | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_455ae255a2d15b228d149a20ea6bf841 | p77@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_455ae255a2d15b228d149a20ea6bf841 | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_455ae255a2d15b228d149a20ea6bf841 | p@chr13:51335579..51335582, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr1:145478051..145478060, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_455ae255a2d15b228d149a20ea6bf841 | p93@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr2:179514306..179514308, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_455ae255a2d15b228d149a20ea6bf841 | p@chr13:51335579..51335582, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_455ae255a2d15b228d149a20ea6bf841 | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr2:179399371..179399376, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_455ae255a2d15b228d149a20ea6bf841 | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_455ae255a2d15b228d149a20ea6bf841 | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_455ae255a2d15b228d149a20ea6bf841 | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_455ae255a2d15b228d149a20ea6bf841 | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_455ae255a2d15b228d149a20ea6bf841 | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_455ae255a2d15b228d149a20ea6bf841 | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_455ae255a2d15b228d149a20ea6bf841 | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_455ae255a2d15b228d149a20ea6bf841 | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_455ae255a2d15b228d149a20ea6bf841 | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr1:145478051..145478060, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr2:179514306..179514308, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_455ae255a2d15b228d149a20ea6bf841 | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_455ae255a2d15b228d149a20ea6bf841 | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_455ae255a2d15b228d149a20ea6bf841 | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_455ae255a2d15b228d149a20ea6bf841 | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr13:114067922..114067931, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr8:144542829..144542857, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_455ae255a2d15b228d149a20ea6bf841 | p@chr13:114067922..114067931, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_455ae255a2d15b228d149a20ea6bf841 | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_455ae255a2d15b228d149a20ea6bf841 | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_455ae255a2d15b228d149a20ea6bf841 | p93@XIRP2 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_b13d3f4edff2600f659c18a049495f41 | p@chr10:29918007..29918031, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_b13d3f4edff2600f659c18a049495f41 | p73@XIRP2 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_b13d3f4edff2600f659c18a049495f41 | p@chr21:47769234..47769239, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:152590465..152590472,-#_b13d3f4edff2600f659c18a049495f41 | p@chr2:152590465..152590472, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:152566311..152566321,-#_b13d3f4edff2600f659c18a049495f41 | p@chr2:152566311..152566321, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_b13d3f4edff2600f659c18a049495f41 | p@chr2:179656442..179656451, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:102079632..102079647,-#_b13d3f4edff2600f659c18a049495f41 | p@chr12:102079632..102079647, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr22:26299595..26299605,+#_b13d3f4edff2600f659c18a049495f41 | p@chr22:26299595..26299605, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_b13d3f4edff2600f659c18a049495f41 | p@chr2:179656442..179656451, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_b13d3f4edff2600f659c18a049495f41 | p@chr3:69168368..69168389, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:69168368..69168389,-#_b13d3f4edff2600f659c18a049495f41 | p@chr3:69168368..69168389, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_b13d3f4edff2600f659c18a049495f41 | p@chr3:35732964..35732965, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:152590465..152590472,-#_b13d3f4edff2600f659c18a049495f41 | p@chr2:152590465..152590472, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:122884464..122884467,-#_b13d3f4edff2600f659c18a049495f41 | p38@CLIP1 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_b13d3f4edff2600f659c18a049495f41 | p27@CLIP4 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_b13d3f4edff2600f659c18a049495f41 | p@chr21:47769234..47769239, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_b13d3f4edff2600f659c18a049495f41 | p@chr3:35732964..35732965, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_b13d3f4edff2600f659c18a049495f41 | p@chr12:69653866..69653876, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_b13d3f4edff2600f659c18a049495f41 | p27@CLIP4 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_b13d3f4edff2600f659c18a049495f41 | p@chr12:102079632..102079647, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_b13d3f4edff2600f659c18a049495f41 | p@chr18:8608021..8608050, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_b13d3f4edff2600f659c18a049495f41 | p@chr6:125535391..125535409, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_b13d3f4edff2600f659c18a049495f41 | p@chr6:125535391..125535409, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_b13d3f4edff2600f659c18a049495f41 | p@chr3:46924232..46924241, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_b13d3f4edff2600f659c18a049495f41 | p@chr3:46924232..46924241, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_b13d3f4edff2600f659c18a049495f41 | p@chr12:69653866..69653876, + |
