UBERON:0007806: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=connecting stalk | |name=connecting stalk | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 18:03, 12 September 2014
| Name: | connecting stalk | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/] | ||
| Xrefs: |
| ||
| Comments: | todo - this is currently defined as a bridge of mesoderm, but in EHDAA2 is extraembryonic structure split into mesoderm and blood vessels |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000478(extraembryonic structure),UBERON:0004120(mesoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0005728(extraembryonic mesoderm) |
Children
| develops from: | UBERON:0002331 (umbilical cord) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007806 (connecting stalk), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.79e-79 | FFCP PHASE1:Hg19::chr7:135931480..135931486,+#_14bb33615039afdf9052037a7d91f708 | p@chr7:135931480..135931486, + |
| 5.79e-79 | FFCP PHASE1:Hg19::chr10:120921270..120921282,-#_14bb33615039afdf9052037a7d91f708 | p@chr10:120921270..120921282, - |
| 5.79e-79 | FFCP PHASE2:Hg19::chr10:120921270..120921282,-#_14bb33615039afdf9052037a7d91f708 | p@chr10:120921270..120921282, - |
| 5.79e-79 | FFCP PHASE2:Hg19::chr7:135931480..135931486,+#_14bb33615039afdf9052037a7d91f708 | p@chr7:135931480..135931486, + |
| 2.16e-63 | FFCP PHASE1:Hg19::chr1:205744117..205744127,-#_f6db00c50a1cf20f61c2f87d1ff10a42 | p8@RAB7L1 |
| 2.16e-63 | FFCP PHASE2:Hg19::chr1:205744117..205744127,-#_f6db00c50a1cf20f61c2f87d1ff10a42 | p8@RAB7L1 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr6:149464325..149464336,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:149464325..149464336, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:228216610..228216617,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p18@MFF |
| 1.1e-59 | FFCP PHASE2:Hg19::chr1:146746588..146746604,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p5@CHD1L |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:157301317..157301362,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:157301317..157301362, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:36393818..36393829,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p2@ENST00000504344 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr19:42682291..42682301,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr19:42682291..42682301, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr7:106397647..106397655,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr7:106397647..106397655, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:491208..491217,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:491208..491217, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr22:20105576..20105585,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p11@RANBP1 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:45926401..45926410,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:45926401..45926410, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:167951900..167951907,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr4:167951900..167951907, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:189266272..189266296,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:189266272..189266296, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:45063061..45063082,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr2:45063061..45063082, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:106363986..106363994,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr7:106363986..106363994, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr20:22771722..22771733,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr20:22771722..22771733, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:15633244..15633249,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr2:15633244..15633249, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:142250880..142250889,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p4@AF430683, p4@AF430684, p4@AF430685 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr4:167938808..167938815,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr4:167938808..167938815, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:148282641..148282654,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr2:148282641..148282654, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr14:76957775..76957781,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr14:76957775..76957781, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr1:212870782..212870788,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr1:212870782..212870788, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr8:38216859..38216889,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr8:38216859..38216889, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr14:76957775..76957781,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr14:76957775..76957781, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:135735084..135735112,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr7:135735084..135735112, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr21:18180126..18180130,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr21:18180126..18180130, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr17:40021018..40021028,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr17:40021018..40021028, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:53245239..53245255,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr2:53245239..53245255, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr11:128154946..128154955,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr11:128154946..128154955, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr9:74997054..74997058,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr9:74997054..74997058, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:180050773..180050786,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:180050773..180050786, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr21:18170731..18170736,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr21:18170731..18170736, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr11:128154946..128154955,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr11:128154946..128154955, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:228216642..228216661,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p11@MFF |
| 1.1e-59 | FFCP PHASE1:Hg19::chr22:37484406..37484413,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr22:37484406..37484413, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr9:74986248..74986275,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr9:74986248..74986275, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr12:77198556..77198565,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr12:77198556..77198565, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr20:38442102..38442111,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr20:38442102..38442111, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr19:49488921..49488932,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr19:49488921..49488932, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:111319059..111319101,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:111319059..111319101, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr1:207617923..207617929,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr1:207617923..207617929, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr17:1985278..1985290,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr17:1985278..1985290, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:17543537..17543548,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr7:17543537..17543548, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:167983163..167983209,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr4:167983163..167983209, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:119281371..119281382,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:119281371..119281382, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr12:129054695..129054717,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr12:129054695..129054717, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr19:40074306..40074328,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr19:40074306..40074328, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr10:120921395..120921406,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr10:120921395..120921406, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr10:120921395..120921406,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr10:120921395..120921406, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:87324164..87324175,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:87324164..87324175, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:149490934..149490939,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:149490934..149490939, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr6:42362820..42362827,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:42362820..42362827, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:167932279..167932291,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr4:167932279..167932291, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:2930946..2930963,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr2:2930946..2930963, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:106363860..106363870,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr7:106363860..106363870, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:45926401..45926410,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:45926401..45926410, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr22:37484379..37484392,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr22:37484379..37484392, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:148293141..148293150,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr2:148293141..148293150, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr7:102945487..102945492,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr7:102945487..102945492, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:75655787..75655802,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:75655787..75655802, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr14:76017386..76017395,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr14:76017386..76017395, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:119279036..119279047,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:119279036..119279047, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr21:18180062..18180079,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr21:18180062..18180079, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr10:31996512..31996530,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p5@ENST00000433770 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr5:28145264..28145272,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr5:28145264..28145272, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr9:74996801..74996811,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr9:74996801..74996811, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr10:31996512..31996530,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p5@ENST00000433770 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:195306434..195306439,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p10@APOD |
| 1.1e-59 | FFCP PHASE1:Hg19::chr19:53511711..53511720,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr19:53511711..53511720, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr14:76017386..76017395,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr14:76017386..76017395, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:135705366..135705371,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr7:135705366..135705371, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr21:18179708..18179733,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr21:18179708..18179733, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:11264766..11264775,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr2:11264766..11264775, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr19:49488905..49488920,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr19:49488905..49488920, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr9:74995216..74995247,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr9:74995216..74995247, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr12:129054695..129054717,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr12:129054695..129054717, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:228216535..228216554,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p14@MFF |
| 1.1e-59 | FFCP PHASE2:Hg19::chr6:138023078..138023089,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:138023078..138023089, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chrX:109653507..109653518,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chrX:109653507..109653518, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr9:94933452..94933457,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr9:94933452..94933457, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:228216642..228216661,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p11@MFF |
| 1.1e-59 | FFCP PHASE2:Hg19::chr20:38442102..38442111,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr20:38442102..38442111, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chrX:10129292..10129306,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chrX:10129292..10129306, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:150322254..150322291,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:150322254..150322291, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:167957459..167957470,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr4:167957459..167957470, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr21:43934923..43934932,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr21:43934923..43934932, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr5:77713534..77713543,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr5:77713534..77713543, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:106397597..106397610,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr7:106397597..106397610, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:31150998..31151005,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:31150998..31151005, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:153038353..153038371,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:153038353..153038371, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:135486487..135486491,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:135486487..135486491, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr5:146717844..146717861,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr5:146717844..146717861, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:74682916..74682923,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr2:74682916..74682923, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:15651894..15651904,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p4@NBAS |
| 1.1e-59 | FFCP PHASE1:Hg19::chr4:167944606..167944610,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr4:167944606..167944610, - |
