FFCP PHASE2:Hg19::chr7:47579188..47579231,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:64759 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:21616 |TSScla...") |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=64759 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=21616 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=E7ERH3,Q68CZ2,F5GXX8 | ||
|association_with_transcript=0bp_to_ENST00000355730,ENST00000398879,ENST00000442536,ENST00000458317,ENST00000545849,uc003tnv.2,uc010kyo.1_5end | |association_with_transcript=0bp_to_ENST00000355730,ENST00000398879,ENST00000442536,ENST00000458317,ENST00000545849,uc003tnv.2,uc010kyo.1_5end | ||
|cluster_id=chr7:47579188..47579231,- | |cluster_id=chr7:47579188..47579231,- | ||
Latest revision as of 21:14, 18 September 2015
| Short description: | p13@TNS3 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_13_at_TNS3_5end |
| Coexpression cluster: | C356_renal_Smooth_Chondrocyte_thyroid_serous_Small_mesenchymal |
| Association with transcript: | 0bp_to_ENST00000355730, ENST00000398879, ENST00000442536, ENST00000458317, ENST00000545849, uc003tnv.2, uc010kyo.1_5end |
| EntrezGene: | TNS3 |
| HGNC: | 21616 |
| UniProt: | E7ERH3Q68CZ2F5GXX8 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p13@TNS3 |
|---|
0
5
10
15
20
25
30
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| kidney tubule cell | 7.01e-42 | 10 |
| nephron tubule epithelial cell | 7.01e-42 | 10 |
| kidney cell | 1.18e-36 | 17 |
| kidney epithelial cell | 1.18e-36 | 17 |
| epithelial cell of nephron | 1.93e-27 | 15 |
| kidney cortical cell | 1.53e-15 | 12 |
| renal cortical epithelial cell | 1.53e-15 | 12 |
| mesangial cell | 5.84e-12 | 2 |
| kidney interstitial cell | 5.84e-12 | 2 |
| juxtaglomerular complex cell | 5.84e-12 | 2 |
Showing 1 to 10 of 16 entries
| Ontology term | p-value | n |
|---|---|---|
| nephron tubule epithelium | 7.01e-42 | 10 |
| kidney | 5.17e-33 | 26 |
| kidney mesenchyme | 5.17e-33 | 26 |
| upper urinary tract | 5.17e-33 | 26 |
| kidney rudiment | 5.17e-33 | 26 |
| kidney field | 5.17e-33 | 26 |
| abdomen element | 5.78e-29 | 54 |
| abdominal segment element | 5.78e-29 | 54 |
| nephron epithelium | 1.93e-27 | 15 |
| renal tubule | 1.93e-27 | 15 |
Showing 1 to 10 of 44 entries
