FFCP PHASE1:Hg19::chr19:11217362..11217367,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:11217362..11217367,+ to FFCP PHASE1:Hg19::chr19:11217362..11217367,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3949 | |EntrezGene=3949 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6547 | |HGNC=6547 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=330bp_to_ENST00000558528_5end | |||
|cluster_id=chr19:11217362..11217367,+ | |||
|coexpression_cluster_id=C193 | |||
|description=CAGE_peak_6_at_LDLR_5end | |||
|id=chr19:11217362..11217367,+ | |||
|ontology_enrichment_celltype=CL:0000012!4.65e-22!682;CL:0000003!5.69e-22!722;CL:0000548!7.51e-22!679;CL:0000004!7.51e-22!679;CL:0000255!7.51e-22!679;CL:0002371!1.23e-20!591;CL:0000144!7.41e-19!625;CL:0000220!1.52e-11!246;CL:0002321!4.42e-11!248;CL:0000055!4.13e-09!180;CL:0000066!3.30e-08!254;CL:0000183!4.84e-08!59;CL:0000187!5.36e-07!54;CL:0000393!6.92e-07!60;CL:0000211!6.92e-07!60;CL:0000680!7.16e-07!57;CL:0000056!7.16e-07!57;CL:0000355!7.16e-07!57;CL:0000063!8.19e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:1000507;1.06e-10;10!CL:1000494;1.06e-10;10!CL:1000449;4.84e-09;15!CL:1000497;1.34e-07;17!CL:0002518;1.34e-07;17!CL:0002202;7.17e-07;9!CL:0002632;7.17e-07;9!CL:0002681;1.00e-06;12!CL:0002584;1.00e-06;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,1.12e-10,10;CL:1000494,1.12e-10,10;CL:1000449,5.92e-09,15;CL:0002321,2.85e-08,250;CL:1000497,1.59e-07,17;CL:0002518,1.59e-07,17;CL:0002202,6.02e-07,9;CL:0002632,6.02e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!5.10e-08!143;UBERON:0000914!3.42e-07!83;UBERON:0002329!3.42e-07!83;UBERON:0003077!3.42e-07!83;UBERON:0003059!3.42e-07!83;UBERON:0007282!3.42e-07!83;UBERON:0009618!3.42e-07!83;UBERON:0007285!3.42e-07!83;UBERON:0000490!3.47e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;1.06e-10;10!UBERON:0009773;1.06e-10;10!UBERON:0001231;1.06e-10;10!UBERON:0004810;1.06e-10;10!UBERON:0006555;4.84e-09;15!UBERON:0004819;4.84e-09;15!UBERON:0001285;4.84e-09;15!UBERON:0007684;4.84e-09;15!UBERON:0001801;2.94e-08;14!UBERON:0000019;4.81e-08;19!UBERON:0000047;4.81e-08;19!UBERON:0004088;4.81e-08;19!UBERON:0010230;4.81e-08;19!UBERON:0000970;1.83e-07;20!UBERON:0007196;2.64e-07;15!UBERON:0001558;2.64e-07;15!UBERON:0002104;6.05e-07;21!UBERON:0001456;6.05e-07;21!UBERON:0001225;1.00e-06;12!UBERON:0008987;1.00e-06;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,1.12e-10,10;UBERON:0005085,3.83e-09,31;UBERON:0000119,4.97e-09,309;UBERON:0004211,5.92e-09,15;UBERON:0009773,5.92e-09,15;UBERON:0001231,5.92e-09,15;UBERON:0001285,5.92e-09,15;UBERON:0007684,5.92e-09,15;UBERON:0004208,5.92e-09,15;UBERON:0001801,1.20e-08,14;UBERON:0000483,2.14e-08,306;UBERON:0006555,3.42e-08,16;UBERON:0004819,3.42e-08,16;UBERON:0000019,8.96e-08,20;UBERON:0000047,8.96e-08,20;UBERON:0010312,8.96e-08,20;UBERON:0004088,8.96e-08,20;UBERON:0010230,8.96e-08,20;UBERON:0003072,8.96e-08,20;UBERON:0004128,8.96e-08,20;UBERON:0003071,8.96e-08,20;UBERON:0007196,2.34e-07,15;UBERON:0001558,2.34e-07,15;UBERON:0000970,3.11e-07,21;UBERON:0002104,3.11e-07,21;UBERON:0000490,3.45e-07,148;UBERON:0001456,9.55e-07,22 | |||
|phase1_expression=0,0,0,1.0007329835313,0,0,0,0,0,1.47440361900905,0.697801167972428,10.4851858622483,0.791300934685361,5.19818682432196,0.662794751455832,0,0,0.730310090387373,0,8.125989833068,1.83600622119828,0.626909442956176,7.15589967827642,1.23186982565596,1.12988375635323,0.687720651731561,0.656804715599566,0.708397031823113,0.786728553697808,0,0.77408061658038,8.27479102031034,5.4217065380085,3.32778609150109,19.3668001450754,6.53978469442139,0,1.10799081706375,0.200544447470142,0,0,0,0,0,0.377875943688809,0,0.232429036905685,0,0.309706370895104,0,0,0,0,0,0,0,0,0.224723484445085,0,1.60464513538047,0.639337125799041,0,0.199463657621632,0,0,0,0,0.502497330513487,0,0.434377689410233,0,1.10483290796269,0.632924774881769,0,0,0.419317291016752,1.01095768031846,0.600707571366025,0,0,0,0,0,0,0,0.853460445133014,0.800791974072025,1.14950487990897,0.661044872784862,0.954053754535364,0,0,0.764546456250458,0,0.560508562981536,0.263384084775077,0,0,0,0.668745981562712,0,0,0,4.67923918917729,1.47302953737419,0.886135578334485,0.541607727530031,0.512365278902701,0.910415432919148,0.328875809207352,0.552700035571697,1.73881851441031,0,0,0,4.75899239329778,0,0.34362744548263,0,0.318565414324097,1.30216690771284,0,0.150575119077773,0,1.24930726552346,0.473554504088034,0,0.201606743224732,0,0,0,0.670700859703636,1.40648818027883,0,0.50133791063589,0.144846518960824,2.3858578411533,0,4.44313640671119,0.221729397462564,0.790513071238134,0.130979075497713,12.3860398019464,1.48313777113772,0,0,0,0,0.571994910780128,0,3.57772333260069,0,2.77712401286075,0,1.67799774483962,0.275118041940067,0.835979866147242,0.516833518338658,0,0.33472061276467,4.02829317109147,2.28081631715554,0,1.47065232138347,0,2.05389375053383,0.22452937262617,0,3.06633274931766,20.8838445104988,0.732806975721629,0,0,10.4662572514208,0,0.633152558322899,0,0,0.709336764396714,0.560677600142307,0,0,3.7345324247972,0.269421344139376,0.653847612453835,4.54072282934794,0,5.38939293217732,0,7.98660550162229,0.298897361103602,1.29177948508141,0.647491777472526,0.842704840213491,4.08308342509786,1.22834317311768,0.929932030581889,1.18800285728205,0.247266929278557,11.8320977051943,1.43723628363248,7.07011678607078,0.875829639103749,3.87889761677856,0,0.30648779579902,0.300476117813194,1.02088964844019,0,0.427114777637135,0.211931901159562,0,0.515262646192195,0,0.930584281657949,0,0.876933046450788,0,0.368199594569197,0.484938170456436,0,0.302256294682921,0.847802961552438,0.966304265816484,3.54569956768085,1.72082757233402,0,0,0.232387885739037,0.10366105501537,0.756962552626885,0.36497735907583,0,0,2.76269842704961,0.464367928031979,2.16563844500876,1.41968160047813,0.337169380156203,0,0.882351781859152,0.435758888184812,0,0.943819157121151,1.17732879075208,0.769494313892781,0,0,9.8777762719536,4.41026134156626,0,0,0,0,0.491953754172454,2.91665277507493,1.20725313949488,29.2244558469811,0.603173834469785,3.14800713539001,3.25808305310325,5.19967392639789,1.44331342025273,1.97081688457631,1.6437217193015,1.01056513432752,0,0.190254152234598,2.37061319387782,2.57545848628462,0,0.234004265139238,0,1.87467667973554,0.335964256397719,2.97727704209012,0.53735113621709,1.16253575405585,4.21720947081732,0.492663237895943,0.44024217006613,0,0,0.12624243342638,0.380987365753014,1.14596527667483,4.68869788840188,0,0.308482478109971,0,0.285826432630578,6.95212722941236,0,2.6401782895542,0,57.2250313363012,0,1.59562869950922,1.04007436911366,6.94459910507784,1.41849132023278,0.266422179016099,2.00169191121407,5.42621605391443,4.11620168390384,1.30294473717494,2.13235169245527,0,0,0,0,0,0,0,0.239624855491583,0,0,0.868687840005475,0,0.358121926479791,1.56919201590938,0.197030760201927,0,0,0.508189248444927,0,0,1.00509759200609,0,0,0,0,1.47229790062968,0,0.542530047399471,0.623912584592421,0,0,0,0,0,0,0,0.368738337083406,1.65078867489357,12.5312740776154,0,0.206768026122887,0,0,0.909382714338778,16.6435439510497,0.604780586659361,0,0,0,0,0,0,0,0,0,1.64254312027618,0,0.232420756919918,0.362578348774867,0.601519410909855,0,0.459257792658427,0.546273504020151,0.131124414959424,5.41439535488894,2.6185214615501,14.9026456143602,1.46139224653261,1.26661954671451,2.27466768141793,1.19065593693561,0,0,6.77366093859632,1.00337954770971,6.88165937221603,2.49322802678617,2.91037181138832,5.7007567927943,5.75157992254781,4.61610225209501,5.24823433119529,0,0.103041011647722,0,0.082509499920588,1.72279661398852,1.30012049207304,0,0.290012154876366,1.23238893691716,0.614014698904518,0.551346289938122,3.22260734604821,0.725083469571143,1.10794615640931,1.4245125703478,1.15699440752685,0.384380134730212,0.255225424989168,0.4046311234222,0,0,2.7881490806424,0,0.532306030317022,5.21959795245044,0.55597265731176,0,2.97726695487734,1.89827654831236,0.38126038784765,6.65334257409468,0,5.09125196681499,2.35484592059769,4.31693898199955,0.823611089208164,1.41374882814824,0.606547444719948,0,0,11.2155759990606,0,1.05650146756755,3.41249778519964,0.282810863907425,0,1.10273068709225,0.6634389752412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| ||
|short_description=p6@LDLR | |||
}} | }} |
Latest revision as of 04:20, 25 September 2015
Short description: | p6@LDLR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LDLR_5end |
Coexpression cluster: | C193_Mesenchymal_Adipocyte_mature_Cardiac_heart_CD14CD16_CD14 |
Association with transcript: | 330bp_to_ENST00000558528_5end |
EntrezGene: | LDLR |
HGNC: | 6547 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 1.12e-10 | 10 |
nephron tubule epithelial cell | 1.12e-10 | 10 |
epithelial cell of nephron | 5.92e-09 | 15 |
embryonic cell | 2.85e-08 | 250 |
kidney cell | 1.59e-07 | 17 |
kidney epithelial cell | 1.59e-07 | 17 |
epithelial cell of tracheobronchial tree | 6.02e-07 | 9 |
epithelial cell of lower respiratory tract | 6.02e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 1.12e-10 | 10 |
ectodermal placode | 3.83e-09 | 31 |
cell layer | 4.97e-09 | 309 |
nephron epithelium | 5.92e-09 | 15 |
renal tubule | 5.92e-09 | 15 |
nephron tubule | 5.92e-09 | 15 |
nephron | 5.92e-09 | 15 |
uriniferous tubule | 5.92e-09 | 15 |
nephrogenic mesenchyme | 5.92e-09 | 15 |
anterior segment of eyeball | 1.20e-08 | 14 |
epithelium | 2.14e-08 | 306 |
excretory tube | 3.42e-08 | 16 |
kidney epithelium | 3.42e-08 | 16 |
camera-type eye | 8.96e-08 | 20 |
simple eye | 8.96e-08 | 20 |
immature eye | 8.96e-08 | 20 |
ocular region | 8.96e-08 | 20 |
eyeball of camera-type eye | 8.96e-08 | 20 |
optic cup | 8.96e-08 | 20 |
optic vesicle | 8.96e-08 | 20 |
eye primordium | 8.96e-08 | 20 |
tracheobronchial tree | 2.34e-07 | 15 |
lower respiratory tract | 2.34e-07 | 15 |
eye | 3.11e-07 | 21 |
visual system | 3.11e-07 | 21 |
unilaminar epithelium | 3.45e-07 | 148 |
face | 9.55e-07 | 22 |