FFCP PHASE1:Hg19::chr4:41540251..41540269,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:41540251..41540269,+ to FFCP PHASE1:Hg19::chr4:41540251..41540269,+: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=22998 | |EntrezGene=22998 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29191 | |HGNC=29191 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=60bp_to_ENST00000511496,uc003gvz.3,uc003gwa.3_5end | |||
|cluster_id=chr4:41540251..41540269,+ | |||
|coexpression_cluster_id=C2793 | |||
|description=CAGE_peak_11_at_LIMCH1_5end | |||
|id=chr4:41540251..41540269,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002580;4.96e-08;3!CL:0002579;8.45e-08;3!CL:0002615;1.89e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002580,4.42e-08,3;CL:0002579,8.86e-08,3;CL:0002615,1.71e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0008947;6.43e-15;29 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.02e-30!115;UBERON:0001737!6.11e-11!9;UBERON:0000064!1.34e-09!219;UBERON:0001557!3.27e-09!19;UBERON:0001049!2.98e-08!57;UBERON:0005068!2.98e-08!57;UBERON:0006241!2.98e-08!57;UBERON:0007135!2.98e-08!57;UBERON:0003075!7.98e-08!86;UBERON:0007284!7.98e-08!86;UBERON:0000477!1.32e-07!286;UBERON:0003688!1.34e-07!6;UBERON:0002358!1.34e-07!6;UBERON:0003684!1.34e-07!6;UBERON:0001178!1.34e-07!6;UBERON:0004457!3.44e-07!12;UBERON:0000042!3.44e-07!12;UBERON:0002346!5.08e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.50e-20;9!UBERON:0001557;2.50e-20;9!UBERON:0003688;1.39e-13;6!UBERON:0002358;1.39e-13;6!UBERON:0003684;1.39e-13;6!UBERON:0001178;1.39e-13;6!UBERON:0004457;8.93e-09;9!UBERON:0000042;8.93e-09;9!UBERON:0002298;1.41e-08;6!UBERON:0004151;7.28e-08;3!UBERON:0003978;1.16e-07;3!UBERON:0000946;1.16e-07;3!UBERON:0000065;1.18e-07;44!UBERON:0001443;2.99e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.88e-20,9;UBERON:0003688,1.32e-13,6;UBERON:0002358,1.32e-13,6;UBERON:0003684,1.32e-13,6;UBERON:0001178,1.32e-13,6;UBERON:0001557,3.41e-13,19;UBERON:0004457,1.37e-11,12;UBERON:0000042,1.37e-11,12;UBERON:0008947,2.04e-10,38;UBERON:0003258,2.04e-10,38;UBERON:0002298,1.53e-08,6;UBERON:0000065,1.68e-08,54;UBERON:0007023,6.45e-08,114;UBERON:0004151,8.66e-08,3;UBERON:0003978,1.11e-07,3;UBERON:0009751,1.11e-07,3;UBERON:0000946,1.11e-07,3;UBERON:0002523,1.11e-07,3;UBERON:0005983,1.11e-07,3;UBERON:0002165,1.11e-07,3;UBERON:0002062,1.11e-07,3;UBERON:0007280,1.11e-07,3;UBERON:0001443,2.40e-07,11 | |||
|phase1_expression=4.54195948176392,2.99740733447376,4.65149533516705,5.00366491765652,1.78784437770915,9.59572376510406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0.50133791063589,0,1.5905718941022,0,0,0,0,0.916853528483988,0,0,0,0,0,0,0,0,0.596287222100115,0,0,0,0,0,0,0,0.35576626268671,0,0.805658634218294,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,1.98788780678127,0.633152558322899,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427114777637135,0,0,0,0.257640540045629,0.558350568994769,0.506328996723799,2.43592512902997,0,0.184099797284599,0,0,0.201504196455281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.25904480143438,5.90046415273356,5.3022426574366,5.07352274569012,4.13970943775572,4.03360052488864,4.31460186112526,3.72820783738158,4.61696588335668,0,0,0,0,0,0,0.590789906681404,0,0,0.343135620597051,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0.190254152234598,0,0,0,0,0,0,0.671928512795438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,1.04007436911366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434343920002738,0,1.07436577943937,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604780586659361,7.44323423456331,5.83155498494637,3.64858122762996,3.20347873139252,7.67560873600055,3.53878626515936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,2.26690225624989,0.457847324091717,0.082509499920588,0.574265537996172,0,0,0,0,0.15350367472613,0,0,0,0,5.16385806751077,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0.372158369359667,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,1.05650146756755,0,0,0,0,0,0,0,0,0.202910376962704,0,0,0,0,0.7133421029625,0,0.633322905892992,0,0,0,0,0,0,2.54188262097304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0.47748896947538,0,0.921482106297696,0,0,0.556543525114529,0,0,3.78571177677032,0,0,0,0,0,0.269605053441981,0,0,0.887790650732402,0,3.33410970433911,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0.221158519862449,0,0.219385397153973,2.94133851501273,0,0.153900517007594,2.39278317278703,0,0,0,1.91400695839152,0.457987967009312,3.73124343213044,0,0,0,0,0,0,0,0,0,0,0,0.432777279484182,0,0.353830258013357,0,0,0,0,0.404406797884062,5.61804353109152,0.468528891450678,0,0,0,0.789168805698781,0,0,3.03295582216742,0,0,0,0,0,0,0,0,0,0,0,1.04836000945218,0,0,0,0,0.290967049465258,0,0.451961481561065,0.274083849293502,0,0.189932387867636,0.195551382734803,0,1.06726497369676,0.999048047910651,0,0,0,0,9.81595030966917,1.17847017308398,0.951329442515298,1.569042694685,0,0,0.600420288709789,0.958337652243951,0,2.14882720709979,0,5.86493042671734,4.58320848023367,2.15361907373044,2.39614800598789,7.2968428183217,3.12440040418622,1.81395375714161,1.44119953416961,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0.2249738915515,0,0.182248669974074,0,0.551639951094387,0.367182116944987,0,0.35857467866569,2.30298236783334,4.2881719582402,17.8764831998667,0,0,0,0,0,0,0,0,0.439656701034247,0,3.10279095267721,2.11572162788304,0,0,5.55294545352012,7.23139803458463,9.1132592176383,0,0,0,1.91502377331055,0.544017803369474,0.5013797880454,0.306345576763462,0,0,0,0.488105059607853,0.250381861413,1.72022758707021,1.44207766997908,2.79433813236226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0.343395705182793,0,0,0.963099152036517,0.214441591374926,0.260994291965212,1.13352962756136,0,6.11841761266169,2.50724377514082,5.5584260488975,4.38568099157414,0.530067437837643,5.01576499504378,5.40615810089832,0,0,11.5466783347405,0.138258436151731,0,0,0,0,11.3055538026711,0,0,0,0,1.70254786070051,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0,0,0.256916900385838,0,0.159633859057151,0,0,0.0691572524642179,0.645902582527404,2.85538840518309,0,0,0.366857197043358,0.693153996902029,0,0,0,0.902523940191087,0,0,0.261906694481422,1.47394725759087,0,0.540300676947157,0.781078098613847,0.206686796501184,0.253663240775627,0,0.548257766857182,3.96968942711435,0,0,0,0.336283722218824,0.606965604236632,0,0.177404740325278,0,0.514464028312255,0.747667062745149,0.0657727735628491,0,0,0.549451649953598,0,1.40136081656895,0.913158720509496,0,0,0.643288897589907,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,1.94228651156368,2.15591894398119,2.3196288626764,1.94284397223656,0,0.596852325484105,0,0,0,0,0,0,0,0.735444965261716,0,4.51509474364374,2.67341760294377,0.8453114551668,2.0391253762538,10.4322148957637,8.70181487643292,0,0,2.11736923029415,0,0,0,0.573358332605805,0,0.0679914901909147,0,0,0,0.924351257262837,0.432626562123789,0,0.109265571963696,0,0,0,0.0918948995348449,0,0.0757786982182394,0.267964130156178,0,0.20686599172379,3.62497769231668,1.42838658878244,0,0.124149428591716,0.112131862580613,0.12729431655633,0.606351566874658,7.83780292429061,8.89806582821731,0.0673520530145875,0.215166616178029,2.99394320891412,0,0,0,0,0,0.244482888365733,0,0.665756774185513,0.402547587182052,0 | |phase1_expression=4.54195948176392,2.99740733447376,4.65149533516705,5.00366491765652,1.78784437770915,9.59572376510406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0.50133791063589,0,1.5905718941022,0,0,0,0,0.916853528483988,0,0,0,0,0,0,0,0,0.596287222100115,0,0,0,0,0,0,0,0.35576626268671,0,0.805658634218294,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,1.98788780678127,0.633152558322899,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427114777637135,0,0,0,0.257640540045629,0.558350568994769,0.506328996723799,2.43592512902997,0,0.184099797284599,0,0,0.201504196455281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.25904480143438,5.90046415273356,5.3022426574366,5.07352274569012,4.13970943775572,4.03360052488864,4.31460186112526,3.72820783738158,4.61696588335668,0,0,0,0,0,0,0.590789906681404,0,0,0.343135620597051,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0.190254152234598,0,0,0,0,0,0,0.671928512795438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,1.04007436911366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434343920002738,0,1.07436577943937,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604780586659361,7.44323423456331,5.83155498494637,3.64858122762996,3.20347873139252,7.67560873600055,3.53878626515936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,2.26690225624989,0.457847324091717,0.082509499920588,0.574265537996172,0,0,0,0,0.15350367472613,0,0,0,0,5.16385806751077,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0.372158369359667,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,1.05650146756755,0,0,0,0,0,0,0,0,0.202910376962704,0,0,0,0,0.7133421029625,0,0.633322905892992,0,0,0,0,0,0,2.54188262097304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0.47748896947538,0,0.921482106297696,0,0,0.556543525114529,0,0,3.78571177677032,0,0,0,0,0,0.269605053441981,0,0,0.887790650732402,0,3.33410970433911,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0.221158519862449,0,0.219385397153973,2.94133851501273,0,0.153900517007594,2.39278317278703,0,0,0,1.91400695839152,0.457987967009312,3.73124343213044,0,0,0,0,0,0,0,0,0,0,0,0.432777279484182,0,0.353830258013357,0,0,0,0,0.404406797884062,5.61804353109152,0.468528891450678,0,0,0,0.789168805698781,0,0,3.03295582216742,0,0,0,0,0,0,0,0,0,0,0,1.04836000945218,0,0,0,0,0.290967049465258,0,0.451961481561065,0.274083849293502,0,0.189932387867636,0.195551382734803,0,1.06726497369676,0.999048047910651,0,0,0,0,9.81595030966917,1.17847017308398,0.951329442515298,1.569042694685,0,0,0.600420288709789,0.958337652243951,0,2.14882720709979,0,5.86493042671734,4.58320848023367,2.15361907373044,2.39614800598789,7.2968428183217,3.12440040418622,1.81395375714161,1.44119953416961,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0.2249738915515,0,0.182248669974074,0,0.551639951094387,0.367182116944987,0,0.35857467866569,2.30298236783334,4.2881719582402,17.8764831998667,0,0,0,0,0,0,0,0,0.439656701034247,0,3.10279095267721,2.11572162788304,0,0,5.55294545352012,7.23139803458463,9.1132592176383,0,0,0,1.91502377331055,0.544017803369474,0.5013797880454,0.306345576763462,0,0,0,0.488105059607853,0.250381861413,1.72022758707021,1.44207766997908,2.79433813236226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0.343395705182793,0,0,0.963099152036517,0.214441591374926,0.260994291965212,1.13352962756136,0,6.11841761266169,2.50724377514082,5.5584260488975,4.38568099157414,0.530067437837643,5.01576499504378,5.40615810089832,0,0,11.5466783347405,0.138258436151731,0,0,0,0,11.3055538026711,0,0,0,0,1.70254786070051,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0,0,0.256916900385838,0,0.159633859057151,0,0,0.0691572524642179,0.645902582527404,2.85538840518309,0,0,0.366857197043358,0.693153996902029,0,0,0,0.902523940191087,0,0,0.261906694481422,1.47394725759087,0,0.540300676947157,0.781078098613847,0.206686796501184,0.253663240775627,0,0.548257766857182,3.96968942711435,0,0,0,0.336283722218824,0.606965604236632,0,0.177404740325278,0,0.514464028312255,0.747667062745149,0.0657727735628491,0,0,0.549451649953598,0,1.40136081656895,0.913158720509496,0,0,0.643288897589907,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,1.94228651156368,2.15591894398119,2.3196288626764,1.94284397223656,0,0.596852325484105,0,0,0,0,0,0,0,0.735444965261716,0,4.51509474364374,2.67341760294377,0.8453114551668,2.0391253762538,10.4322148957637,8.70181487643292,0,0,2.11736923029415,0,0,0,0.573358332605805,0,0.0679914901909147,0,0,0,0.924351257262837,0.432626562123789,0,0.109265571963696,0,0,0,0.0918948995348449,0,0.0757786982182394,0.267964130156178,0,0.20686599172379,3.62497769231668,1.42838658878244,0,0.124149428591716,0.112131862580613,0.12729431655633,0.606351566874658,7.83780292429061,8.89806582821731,0.0673520530145875,0.215166616178029,2.99394320891412,0,0,0,0,0,0.244482888365733,0,0.665756774185513,0.402547587182052,0 | ||
|short_description=p11@LIMCH1 | |||
}} | }} |
Latest revision as of 19:39, 17 September 2015
Short description: | p11@LIMCH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_LIMCH1_5end |
Coexpression cluster: | C2793_spleen_left_giant_lung_tongue_heart_mesothelioma |
Association with transcript: | 60bp_to_ENST00000511496, uc003gvz.3, uc003gwa.3_5end |
EntrezGene: | LIMCH1 |
HGNC: | 29191 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte of the breast | 4.42e-08 | 3 |
omentum preadipocyte | 8.86e-08 | 3 |
adipocyte of omentum tissue | 1.71e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
larynx | 2.88e-20 | 9 |
omentum | 1.32e-13 | 6 |
peritoneum | 1.32e-13 | 6 |
abdominal cavity | 1.32e-13 | 6 |
visceral peritoneum | 1.32e-13 | 6 |
upper respiratory tract | 3.41e-13 | 19 |
cavity lining | 1.37e-11 | 12 |
serous membrane | 1.37e-11 | 12 |
respiratory primordium | 2.04e-10 | 38 |
endoderm of foregut | 2.04e-10 | 38 |
brainstem | 1.53e-08 | 6 |
respiratory tract | 1.68e-08 | 54 |
adult organism | 6.45e-08 | 114 |
cardiac chamber | 8.66e-08 | 3 |
valve | 1.11e-07 | 3 |
cardiac mesenchyme | 1.11e-07 | 3 |
cardial valve | 1.11e-07 | 3 |
tunica intima | 1.11e-07 | 3 |
heart layer | 1.11e-07 | 3 |
endocardium | 1.11e-07 | 3 |
endocardial cushion | 1.11e-07 | 3 |
presumptive endocardium | 1.11e-07 | 3 |
chest | 2.40e-07 | 11 |