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|namespace=
|namespace=
|def="Rostral segment of the hindbrain that has as its parts the pons (where present) and the cerebellum." [Wikipedia:Metencephalon]
|def="Rostral segment of the hindbrain that has as its parts the pons (where present) and the cerebellum." [Wikipedia:Metencephalon]
|xref=BTO:0000673;;EHDAA:5498;;EHDAA2:0001149;;EMAPA:17071;;FMA:62003;;GAID:594;;http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png;;MA:0000197;;MESH:A.08.186.211.132.810.428;;NIF_GrossAnatomy:birnlex_965;;VHOG:0000741
|xref=BTO:0000673;;EHDAA2:0001149;;EHDAA:5498;;EMAPA:17071;;FMA:62003;;GAID:594;;http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png;;MA:0000197;;MESH:A.08.186.211.132.810.428;;ncithesaurus:Epencephalon;;NIF_GrossAnatomy:birnlex_965;;VHOG:0000741
|is_a=UBERON:0000063;;UBERON:0004733
|is_a=UBERON:0004733;;UBERON:0010314
|synonym="epencephalon-2" EXACT []
|synonym="epencephalon" EXACT [ncithesaurus:Epencephalon];;"epencephalon-2" RELATED [FMA:62003]
|comment=the terms metencephalon and myelencephalon are only meaningful in mammals and birds[Neuroanatomy of the Zebrafish Brain]. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished in ZFA[ZFA].
|comment=the terms metencephalon and myelencephalon are only meaningful in mammals and birds[Neuroanatomy of the Zebrafish Brain]. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished in ZFA[ZFA].
|alt_id=UBERON:FMA_62003-MA_0000197
|alt_id=UBERON:FMA_62003-MA_0000197
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|obo_creation_date=
|obo_creation_date=
|subset=uberon_slim
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0010092
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0002028
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value="dubious_for_taxon" NCBITaxon:7955;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:00, 26 June 2012

Name:metencephalon
Definition:"Rostral segment of the hindbrain that has as its parts the pons (where present) and the cerebellum." [Wikipedia:Metencephalon]
Xrefs:
links:

BTO:0000673
EHDAA2:0001149
EHDAA:5498
EMAPA:17071
FMA:62003
GAID:594
[1]
[ 200px-EmbryonicBrain.svg.png 200px-EmbryonicBrain.svg.png]
MA:0000197
MESH:A.08.186.211.132.810.428
ncithesaurus:Epencephalon
NIF_GrossAnatomy:birnlex_965

VHOG:0000741
Synonyms: "epencephalon" EXACT [ncithesaurus:Epencephalon]
"epencephalon-2" RELATED [FMA:62003]
Comments:the terms metencephalon and myelencephalon are only meaningful in mammals and birds[Neuroanatomy of the Zebrafish Brain]. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata and thus these are not distinguished in ZFA[ZFA].
Alt_id: UBERON:FMA_62003-MA_0000197
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004733(segmental subdivision of hindbrain),UBERON:0010314(structure with developmental contribution from neural crest)



Children

part of:UBERON:0000988 (pons),UBERON:0002037 (cerebellum),UBERON:0002680 (regional part of metencephalon)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001895 (metencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.91e-91FFCP PHASE2:Hg19::chr11:27742115..27742119,-#_d8bec38bad73c77e246f6c9a3c75bc12p17@BDNF
4.91e-91FFCP PHASE1:Hg19::chr11:27742115..27742119,-#_d8bec38bad73c77e246f6c9a3c75bc12p17@BDNF
1.37e-87FFCP PHASE1:Hg19::chr6:72922728..72922737,+#_c148a72f7dad25221c9b14131358ee33p29@RIMS1
1.37e-87FFCP PHASE2:Hg19::chr17:72667462..72667471,+#_c148a72f7dad25221c9b14131358ee33p11@RAB37
1.37e-87FFCP PHASE1:Hg19::chr9:135538143..135538152,-#_c148a72f7dad25221c9b14131358ee33p2@CU680380
1.37e-87FFCP PHASE2:Hg19::chr6:72922728..72922737,+#_c148a72f7dad25221c9b14131358ee33p29@RIMS1
1.37e-87FFCP PHASE1:Hg19::chr17:72667462..72667471,+#_c148a72f7dad25221c9b14131358ee33p11@RAB37
1.37e-87FFCP PHASE2:Hg19::chr11:123448159..123448170,+#_c148a72f7dad25221c9b14131358ee33p4@AB384137
1.37e-87FFCP PHASE1:Hg19::chr15:79724672..79724683,+#_c148a72f7dad25221c9b14131358ee33p1@KIAA1024
1.37e-87FFCP PHASE1:Hg19::chr11:123448159..123448170,+#_c148a72f7dad25221c9b14131358ee33p4@AB384137
1.37e-87FFCP PHASE2:Hg19::chr9:135538143..135538152,-#_c148a72f7dad25221c9b14131358ee33p2@CU680380
1.37e-87FFCP PHASE1:Hg19::chr17:72857611..72857619,-#_c148a72f7dad25221c9b14131358ee33p@chr17:72857611..72857619, -
1.37e-87FFCP PHASE2:Hg19::chr17:50236110..50236119,-#_c148a72f7dad25221c9b14131358ee33p22@CA10
1.37e-87FFCP PHASE2:Hg19::chr15:79724672..79724683,+#_c148a72f7dad25221c9b14131358ee33p1@KIAA1024
1.37e-87FFCP PHASE2:Hg19::chr17:72857611..72857619,-#_c148a72f7dad25221c9b14131358ee33p@chr17:72857611..72857619, -
1.37e-87FFCP PHASE1:Hg19::chr17:50236110..50236119,-#_c148a72f7dad25221c9b14131358ee33p22@CA10
3.19e-78FFCP PHASE2:Hg19::chr11:122733138..122733178,+#_0de7ac27d5768e3316e0468a77ff0b95p3@CRTAM
3.19e-78FFCP PHASE2:Hg19::chr5:20575610..20575619,-#_0de7ac27d5768e3316e0468a77ff0b95p11@CDH18
3.19e-78FFCP PHASE1:Hg19::chr11:122733138..122733178,+#_0de7ac27d5768e3316e0468a77ff0b95p3@CRTAM
3.19e-78FFCP PHASE1:Hg19::chr5:20575610..20575619,-#_0de7ac27d5768e3316e0468a77ff0b95p11@CDH18
2.16e-70FFCP PHASE2:Hg19::chr9:135457457..135457468,+#_1fa645bbfaf1562ebaba33109fcd9827p4@BARHL1
2.16e-70FFCP PHASE1:Hg19::chr9:135457457..135457468,+#_1fa645bbfaf1562ebaba33109fcd9827p4@BARHL1
2.58e-70FFCP PHASE1:Hg19::chr17:72667518..72667529,+#_06bbfc2611d1990bfbfd4c1272a17d73p8@RAB37
2.58e-70FFCP PHASE1:Hg19::chr4:117873850..117873861,-#_06bbfc2611d1990bfbfd4c1272a17d73p@chr4:117873850..117873861, -
2.58e-70FFCP PHASE2:Hg19::chr20:30616906..30616921,-#_06bbfc2611d1990bfbfd4c1272a17d73p@chr20:30616906..30616921, -
2.58e-70FFCP PHASE1:Hg19::chr1:159842835..159842846,-#_06bbfc2611d1990bfbfd4c1272a17d73p1@ENST00000536764
2.58e-70FFCP PHASE2:Hg19::chr1:159842835..159842846,-#_06bbfc2611d1990bfbfd4c1272a17d73p1@ENST00000536764
2.58e-70FFCP PHASE2:Hg19::chr4:117873850..117873861,-#_06bbfc2611d1990bfbfd4c1272a17d73p@chr4:117873850..117873861, -
2.58e-70FFCP PHASE2:Hg19::chr17:72667518..72667529,+#_06bbfc2611d1990bfbfd4c1272a17d73p8@RAB37
2.58e-70FFCP PHASE1:Hg19::chr20:30616906..30616921,-#_06bbfc2611d1990bfbfd4c1272a17d73p@chr20:30616906..30616921, -
3.09e-70FFCP PHASE1:Hg19::chr20:62795787..62795793,+#_5a6ede428ce1b11a0d377ff57915c869p8@MYT1
3.09e-70FFCP PHASE1:Hg19::chr17:50235999..50236008,-#_5a6ede428ce1b11a0d377ff57915c869p21@CA10
3.09e-70FFCP PHASE2:Hg19::chr17:50235999..50236008,-#_5a6ede428ce1b11a0d377ff57915c869p21@CA10
3.09e-70FFCP PHASE2:Hg19::chr20:62795787..62795793,+#_5a6ede428ce1b11a0d377ff57915c869p8@MYT1
9.93e-69FFCP PHASE1:Hg19::chr22:26565113..26565124,+#_cb849ed92cc67c62d11c7cab263b57e5p7@SEZ6L
9.93e-69FFCP PHASE2:Hg19::chr22:26565113..26565124,+#_cb849ed92cc67c62d11c7cab263b57e5p7@SEZ6L
3.04e-66FFCP PHASE2:Hg19::chr2:72381655..72381673,-#_ef66f6393cda2b639c5d73239b267c31p@chr2:72381655..72381673, -
3.04e-66FFCP PHASE1:Hg19::chr2:72381655..72381673,-#_ef66f6393cda2b639c5d73239b267c31p@chr2:72381655..72381673, -
3.75e-66FFCP PHASE1:Hg19::chr11:64146203..64146207,+#_3a4e3432fe51b39a7b889d01fc65023cp@chr11:64146203..64146207, +
3.75e-66FFCP PHASE1:Hg19::chr11:108438755..108438763,-#_3a4e3432fe51b39a7b889d01fc65023cp20@EXPH5
3.75e-66FFCP PHASE1:Hg19::chr1:24526024..24526028,+#_3a4e3432fe51b39a7b889d01fc65023cp@chr1:24526024..24526028, +
3.75e-66FFCP PHASE1:Hg19::chr12:72667119..72667130,+#_3a4e3432fe51b39a7b889d01fc65023cp16@TRHDE
3.75e-66FFCP PHASE1:Hg19::chr1:206611115..206611119,+#_3a4e3432fe51b39a7b889d01fc65023cp@chr1:206611115..206611119, +
3.75e-66FFCP PHASE1:Hg19::chr11:122733093..122733100,+#_3a4e3432fe51b39a7b889d01fc65023cp8@CRTAM
3.75e-66FFCP PHASE1:Hg19::chr13:100633194..100633202,+#_3a4e3432fe51b39a7b889d01fc65023cp6@AK298232
3.75e-66FFCP PHASE1:Hg19::chr14:79746650..79746659,+#_3a4e3432fe51b39a7b889d01fc65023cp23@NRXN3
3.75e-66FFCP PHASE1:Hg19::chr16:3656599..3656608,-#_3a4e3432fe51b39a7b889d01fc65023cp@chr16:3656599..3656608, -
3.75e-66FFCP PHASE1:Hg19::chr19:6501233..6501243,-#_3a4e3432fe51b39a7b889d01fc65023cp@chr19:6501233..6501243, -
3.75e-66FFCP PHASE1:Hg19::chr1:2241890..2241895,-#_3a4e3432fe51b39a7b889d01fc65023cp@chr1:2241890..2241895, -
3.75e-66FFCP PHASE1:Hg19::chr1:228602576..228602587,-#_3a4e3432fe51b39a7b889d01fc65023cp1@CU689740
3.75e-66FFCP PHASE1:Hg19::chr16:49357829..49357832,+#_3a4e3432fe51b39a7b889d01fc65023cp@chr16:49357829..49357832, +
3.75e-66FFCP PHASE1:Hg19::chr20:45062007..45062020,+#_3a4e3432fe51b39a7b889d01fc65023cp7@AK054905
3.75e-66FFCP PHASE1:Hg19::chr14:77582887..77582896,+#_3a4e3432fe51b39a7b889d01fc65023cp12@TMEM63C
3.75e-66FFCP PHASE1:Hg19::chr11:133821982..133821993,-#_3a4e3432fe51b39a7b889d01fc65023cp@chr11:133821982..133821993, -
3.75e-66FFCP PHASE1:Hg19::chr21:47268058..47268079,+#_3a4e3432fe51b39a7b889d01fc65023cp5@PCBP3
3.75e-66FFCP PHASE1:Hg19::chr11:133902562..133902580,+#_3a4e3432fe51b39a7b889d01fc65023cp1@ENST00000529070
3.75e-66FFCP PHASE1:Hg19::chr17:48545700..48545707,+#_3a4e3432fe51b39a7b889d01fc65023cp5@ACSF2
3.75e-66FFCP PHASE1:Hg19::chr17:39553443..39553452,-#_3a4e3432fe51b39a7b889d01fc65023cp2@KRT31
3.75e-66FFCP PHASE1:Hg19::chr17:72673771..72673779,-#_3a4e3432fe51b39a7b889d01fc65023cp@chr17:72673771..72673779, -
3.75e-66FFCP PHASE1:Hg19::chr1:1953233..1953242,-#_3a4e3432fe51b39a7b889d01fc65023cp@chr1:1953233..1953242, -
3.75e-66FFCP PHASE1:Hg19::chr16:23419354..23419361,+#_3a4e3432fe51b39a7b889d01fc65023cp@chr16:23419354..23419361, +
3.75e-66FFCP PHASE1:Hg19::chr10:71562284..71562291,+#_3a4e3432fe51b39a7b889d01fc65023cp14@COL13A1
3.75e-66FFCP PHASE1:Hg19::chr18:8783620..8783627,+#_3a4e3432fe51b39a7b889d01fc65023cp@chr18:8783620..8783627, +
3.75e-66FFCP PHASE1:Hg19::chr17:72667207..72667214,+#_3a4e3432fe51b39a7b889d01fc65023cp12@RAB37
3.75e-66FFCP PHASE1:Hg19::chr16:3656616..3656628,-#_3a4e3432fe51b39a7b889d01fc65023cp@chr16:3656616..3656628, -
3.75e-66FFCP PHASE1:Hg19::chr21:47314143..47314154,-#_3a4e3432fe51b39a7b889d01fc65023cp@chr21:47314143..47314154, -
3.75e-66FFCP PHASE1:Hg19::chr11:123396575..123396583,+#_3a4e3432fe51b39a7b889d01fc65023cp9@GRAMD1B
3.75e-66FFCP PHASE1:Hg19::chr13:42792979..42793012,+#_3a4e3432fe51b39a7b889d01fc65023cp@chr13:42792979..42793012, +
3.75e-66FFCP PHASE1:Hg19::chr17:72667483..72667484,+#_3a4e3432fe51b39a7b889d01fc65023cp18@RAB37
3.75e-66FFCP PHASE1:Hg19::chr1:59775752..59775763,+#_3a4e3432fe51b39a7b889d01fc65023cp19@FGGY
3.75e-66FFCP PHASE1:Hg19::chr16:608967..608994,+#_3a4e3432fe51b39a7b889d01fc65023cp@chr16:608967..608994, +
3.75e-66FFCP PHASE1:Hg19::chr20:30616884..30616898,-#_3a4e3432fe51b39a7b889d01fc65023cp@chr20:30616884..30616898, -
3.75e-66FFCP PHASE1:Hg19::chr22:17891551..17891560,+#_3a4e3432fe51b39a7b889d01fc65023cp@chr22:17891551..17891560, +
3.75e-66FFCP PHASE1:Hg19::chr19:17992758..17992791,+#_3a4e3432fe51b39a7b889d01fc65023cp@chr19:17992758..17992791, +
3.75e-66FFCP PHASE1:Hg19::chr10:122216316..122216327,+#_3a4e3432fe51b39a7b889d01fc65023cp5@PPAPDC1A
3.75e-66FFCP PHASE1:Hg19::chr14:60048980..60048989,-#_3a4e3432fe51b39a7b889d01fc65023cp@chr14:60048980..60048989, -
3.75e-66FFCP PHASE1:Hg19::chr15:81489344..81489353,+#_3a4e3432fe51b39a7b889d01fc65023cp31@IL16
3.75e-66FFCP PHASE1:Hg19::chr16:87376991..87377002,-#_3a4e3432fe51b39a7b889d01fc65023cp@chr16:87376991..87377002, -
3.75e-66FFCP PHASE1:Hg19::chr11:65999312..65999320,+#_3a4e3432fe51b39a7b889d01fc65023cp30@PACS1
3.75e-66FFCP PHASE1:Hg19::chr21:32624498..32624505,-#_3a4e3432fe51b39a7b889d01fc65023cp@chr21:32624498..32624505, -
3.75e-66FFCP PHASE1:Hg19::chr16:87377029..87377039,-#_3a4e3432fe51b39a7b889d01fc65023cp@chr16:87377029..87377039, -
3.75e-66FFCP PHASE1:Hg19::chr17:588406..588409,-#_3a4e3432fe51b39a7b889d01fc65023cp@chr17:588406..588409, -
3.75e-66FFCP PHASE1:Hg19::chr20:45062215..45062225,+#_3a4e3432fe51b39a7b889d01fc65023cp4@AK054905
3.75e-66FFCP PHASE1:Hg19::chr1:46639505..46639517,+#_3a4e3432fe51b39a7b889d01fc65023cp@chr1:46639505..46639517, +
3.75e-66FFCP PHASE1:Hg19::chr20:45062029..45062044,+#_3a4e3432fe51b39a7b889d01fc65023cp6@AK054905
3.75e-66FFCP PHASE1:Hg19::chr1:190445111..190445122,-#_3a4e3432fe51b39a7b889d01fc65023cp15@FAM5C
3.75e-66FFCP PHASE1:Hg19::chr1:244355163..244355179,+#_3a4e3432fe51b39a7b889d01fc65023cp@chr1:244355163..244355179, +
3.75e-66FFCP PHASE1:Hg19::chr20:45061929..45061936,+#_3a4e3432fe51b39a7b889d01fc65023cp8@AK054905
3.75e-66FFCP PHASE1:Hg19::chr16:612039..612048,-#_3a4e3432fe51b39a7b889d01fc65023cp@chr16:612039..612048, -
3.75e-66FFCP PHASE1:Hg19::chr13:100633107..100633110,+#_3a4e3432fe51b39a7b889d01fc65023cp7@AK298232
3.75e-66FFCP PHASE1:Hg19::chr14:24898354..24898366,-#_3a4e3432fe51b39a7b889d01fc65023cp8@CBLN3
3.75e-66FFCP PHASE1:Hg19::chr18:66918040..66918047,-#_3a4e3432fe51b39a7b889d01fc65023cp@chr18:66918040..66918047, -
3.75e-66FFCP PHASE1:Hg19::chr20:45062290..45062300,+#_3a4e3432fe51b39a7b889d01fc65023cp3@AK054905
3.75e-66FFCP PHASE1:Hg19::chr1:244355180..244355201,+#_3a4e3432fe51b39a7b889d01fc65023cp@chr1:244355180..244355201, +
3.75e-66FFCP PHASE1:Hg19::chr11:104480062..104480069,-#_3a4e3432fe51b39a7b889d01fc65023cp3@ENST00000538641
3.75e-66FFCP PHASE1:Hg19::chr12:78430875..78430887,+#_3a4e3432fe51b39a7b889d01fc65023cp1@AB384547
3.75e-66FFCP PHASE1:Hg19::chr14:77582934..77582947,+#_3a4e3432fe51b39a7b889d01fc65023cp9@TMEM63C
3.75e-66FFCP PHASE1:Hg19::chr18:39687774..39687782,+#_3a4e3432fe51b39a7b889d01fc65023cp@chr18:39687774..39687782, +
3.75e-66FFCP PHASE1:Hg19::chr20:45061641..45061646,-#_3a4e3432fe51b39a7b889d01fc65023cp13@ELMO2
3.75e-66FFCP PHASE1:Hg19::chr1:106499338..106499354,+#_3a4e3432fe51b39a7b889d01fc65023cp@chr1:106499338..106499354, +

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