CL:0000723: Difference between revisions
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Revision as of 17:25, 26 June 2012
| Name: | somatic stem cell | ||
|---|---|---|---|
| Namespace: | cell | ||
| Definition: | "A stem cell that can give rise to cell types of the body other than those of the germ-line." [GO:0048103] | ||
| Xrefs: |
|
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000034(stem cell),CL:0002371(somatic cell) |
|---|
Children
| is a: | CL:0000035 (single fate stem cell),CL:0000048 (multi fate stem cell),CL:0002248 (pluripotent stem cell),CL:1000428 (stem cell of epidermis) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10447-106F6
- 10568-108B1 (mesenchymal stem cell line:Hu5/E18)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
- 11217-116B2 (Mesenchymal stem cells - adipose, donor0)
- 11218-116B3 (Mesenchymal stem cells - hepatic, donor0)
- 11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)
- 11229-116C5 (CD14+ monocyte derived endothelial progenitor cells, donor1)
- 11240-116D7 (Skeletal Muscle Satellite Cells, donor1)
- 11271-116H2 (Hair Follicle Dermal Papilla Cells, donor1)
... further results Mouse (Mus musculus)
- 10447-106F6
- 10568-108B1 (mesenchymal stem cell line:Hu5/E18)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
- 11217-116B2 (Mesenchymal stem cells - adipose, donor0)
- 11218-116B3 (Mesenchymal stem cells - hepatic, donor0)
- 11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)
- 11229-116C5 (CD14+ monocyte derived endothelial progenitor cells, donor1)
- 11240-116D7 (Skeletal Muscle Satellite Cells, donor1)
- 11271-116H2 (Hair Follicle Dermal Papilla Cells, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000723 (somatic stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.78e-51 | FFCP PHASE1:Hg19::chr19:48828606..48828637,+#_0c48908a2d0ddbb83cfc211672e9ed3c | p2@EMP3 |
| 2.78e-51 | FFCP PHASE2:Hg19::chr19:48828606..48828637,+#_0c48908a2d0ddbb83cfc211672e9ed3c | p2@EMP3 |
| 9.5e-49 | FFCP PHASE1:Hg19::chr2:182322231..182322262,+#_7f4a7f8625ab92e506ed75223f4da16e | p2@ITGA4 |
| 9.5e-49 | FFCP PHASE2:Hg19::chr2:182322231..182322262,+#_7f4a7f8625ab92e506ed75223f4da16e | p2@ITGA4 |
| 1.49e-48 | FFCP PHASE2:Hg19::chr1:145096480..145096513,+#_3ba5f27597e8c87549d1f5b073fa37b8 | p2@SEC22B |
| 1.49e-48 | FFCP PHASE1:Hg19::chr1:145096480..145096513,+#_3ba5f27597e8c87549d1f5b073fa37b8 | p2@SEC22B |
| 1.29e-46 | FFCP PHASE2:Hg19::chr2:74781828..74781898,+#_ce5f2577242b262da853655144701482 | p1@DOK1 |
| 1.29e-46 | FFCP PHASE1:Hg19::chr2:74781828..74781898,+#_ce5f2577242b262da853655144701482 | p1@DOK1 |
| 1.42e-44 | FFCP PHASE2:Mm9::chr1:146456236..146456244,-#_c4810e77f136ec6dc8d287d77abb8063 | p1@ENSMUST00000157471 |
| 1.42e-44 | FFCP PHASE1:Mm9::chr1:146456236..146456244,-#_c4810e77f136ec6dc8d287d77abb8063 | p1@ENSMUST00000157471 |
| 1.2e-43 | FFCP PHASE2:Mm9::chr3:32910877..32910881,+#_91221acc49bd0f729dcf6a425d0a3a16 | p1@ENSMUST00000122716 |
| 1.2e-43 | FFCP PHASE1:Mm9::chr3:32910877..32910881,+#_91221acc49bd0f729dcf6a425d0a3a16 | p1@ENSMUST00000122716 |
| 5.0e-43 | FFCP PHASE1:Hg19::chr2:114647617..114647739,+#_ef3a8da15621dc6f58552065157d200a | p1@ACTR3 |
| 5.0e-43 | FFCP PHASE2:Hg19::chr2:114647617..114647739,+#_ef3a8da15621dc6f58552065157d200a | p1@ACTR3 |
| 2.32e-42 | FFCP PHASE2:Mm9::chr19:18807230..18807233,+#_c08038b1c15054efc5c6fd51454f3286 | p1@ENSMUST00000083007 |
| 2.32e-42 | FFCP PHASE1:Mm9::chr19:18807230..18807233,+#_c08038b1c15054efc5c6fd51454f3286 | p1@ENSMUST00000083007 |
| 4.79e-42 | FFCP PHASE1:Hg19::chr5:78281092..78281154,-#_746e8a3cc7d303a12f7025b18da301f3 | p1@ARSB |
| 4.79e-42 | FFCP PHASE2:Hg19::chr5:78281092..78281154,-#_746e8a3cc7d303a12f7025b18da301f3 | p1@ARSB |
| 7.27e-42 | FFCP PHASE2:Hg19::chr19:48828647..48828658,+#_b8fb3a437fcf233516bdb1f1ca0cc71f | p3@EMP3 |
| 7.27e-42 | FFCP PHASE1:Hg19::chr19:48828647..48828658,+#_b8fb3a437fcf233516bdb1f1ca0cc71f | p3@EMP3 |
| 1.17e-41 | FFCP PHASE2:Hg19::chr6:31704075..31704106,-#_ccb885aa6f408698bdfc960e29826e8e | p2@CLIC1 |
| 1.17e-41 | FFCP PHASE1:Hg19::chr6:31704075..31704106,-#_ccb885aa6f408698bdfc960e29826e8e | p2@CLIC1 |
| 2.16e-41 | FFCP PHASE1:Hg19::chr11:504446..504486,-#_151ceb9d7c934c49869e055cb8282842 | p4@RNH1 |
| 2.16e-41 | FFCP PHASE2:Hg19::chr11:504446..504486,-#_151ceb9d7c934c49869e055cb8282842 | p4@RNH1 |
| 5.63e-40 | FFCP PHASE1:Mm9::chr4:32085713..32085717,-#_874aab79d40e9f19a3bd1fcee5931806 | p1@ENSMUST00000122491 |
| 5.63e-40 | FFCP PHASE2:Mm9::chr4:32085713..32085717,-#_874aab79d40e9f19a3bd1fcee5931806 | p1@ENSMUST00000122491 |
| 9.7e-40 | FFCP PHASE1:Hg19::chr16:50300440..50300485,+#_33c1544d9700385924f2b1ae8f22d918 | p1@ADCY7 |
| 9.7e-40 | FFCP PHASE2:Hg19::chr16:50300440..50300485,+#_33c1544d9700385924f2b1ae8f22d918 | p1@ADCY7 |
| 1.07e-39 | FFCP PHASE1:Hg19::chr1:183604794..183604908,-#_409f45230a3c779ae01846b6057398cc | p1@ARPC5 |
| 1.07e-39 | FFCP PHASE2:Hg19::chr1:183604794..183604908,-#_409f45230a3c779ae01846b6057398cc | p1@ARPC5 |
| 3.99e-39 | FFCP PHASE2:Mm9::chr3:19460250..19460260,+#_9ac6447388926162036e3172723ca81a | p1@ENSMUST00000083241 |
| 3.99e-39 | FFCP PHASE1:Mm9::chr3:19460250..19460260,+#_9ac6447388926162036e3172723ca81a | p1@ENSMUST00000083241 |
| 5.79e-39 | FFCP PHASE1:Mm9::chr11:48596086..48596090,+#_cf04a3ba7c72e04df18928f636f279b2 | p@chr11:48596086..48596090, + |
| 5.79e-39 | FFCP PHASE2:Mm9::chr11:48596086..48596090,+#_cf04a3ba7c72e04df18928f636f279b2 | p@chr11:48596086..48596090, + |
| 2.16e-38 | FFCP PHASE1:Mm9::chr16:72264646..72264650,-#_955bab6bc979ea5cd209e2568074d26f | p@chr16:72264646..72264650, - |
| 2.16e-38 | FFCP PHASE2:Mm9::chr16:72264646..72264650,-#_955bab6bc979ea5cd209e2568074d26f | p@chr16:72264646..72264650, - |
| 4.54e-38 | FFCP PHASE1:Mm9::chr4:131826124..131826129,-#_ad39f2ce21aa2cc175bb3bf100c39de2 | p1@ENSMUST00000104135 |
| 4.54e-38 | FFCP PHASE2:Mm9::chr4:131826124..131826129,-#_ad39f2ce21aa2cc175bb3bf100c39de2 | p1@ENSMUST00000104135 |
| 5.72e-38 | FFCP PHASE2:Mm9::chr19:26334980..26334985,-#_14d4ad89b6ffd795dab722a84816babe | p1@ENSMUST00000122640 |
| 5.72e-38 | FFCP PHASE1:Mm9::chr19:26334980..26334985,-#_14d4ad89b6ffd795dab722a84816babe | p1@ENSMUST00000122640 |
| 5.74e-38 | FFCP PHASE2:Hg19::chr15:90358115..90358195,-#_475695113ee37cd749f1288f7226ebb7 | p3@ANPEP |
| 5.74e-38 | FFCP PHASE1:Hg19::chr15:90358115..90358195,-#_475695113ee37cd749f1288f7226ebb7 | p3@ANPEP |
| 6.45e-38 | FFCP PHASE2:Hg19::chr12:75874580..75874611,+#_77036bc2eb553887d7c4b170de2c7e64 | p2@GLIPR1 |
| 6.45e-38 | FFCP PHASE1:Hg19::chr12:75874580..75874611,+#_77036bc2eb553887d7c4b170de2c7e64 | p2@GLIPR1 |
| 1.1e-37 | FFCP PHASE1:Hg19::chr2:182322070..182322155,+#_e1e58476bdeefca341a4175f646d0302 | p1@ITGA4 |
| 1.1e-37 | FFCP PHASE2:Hg19::chr2:182322070..182322155,+#_e1e58476bdeefca341a4175f646d0302 | p1@ITGA4 |
| 4.91e-37 | FFCP PHASE1:Hg19::chr11:504867..504925,-#_f4520e7837b2ef2ba786a7d2f6f68776 | p3@RNH1 |
| 4.91e-37 | FFCP PHASE2:Hg19::chr11:504867..504925,-#_f4520e7837b2ef2ba786a7d2f6f68776 | p3@RNH1 |
| 9.41e-37 | FFCP PHASE2:Hg19::chr15:73076030..73076121,-#_8715feb4725a64f1b8d2a4f19b50cbf3 | p1@ADPGK |
| 9.41e-37 | FFCP PHASE1:Hg19::chr15:73076030..73076121,-#_8715feb4725a64f1b8d2a4f19b50cbf3 | p1@ADPGK |
| 1.33e-36 | FFCP PHASE2:Mm9::chr3:72925786..72925790,+#_a07d62bc0f939c64d5607d8d48b24d3e | p@chr3:72925786..72925790, + |
| 1.33e-36 | FFCP PHASE1:Mm9::chr3:72925786..72925790,+#_a07d62bc0f939c64d5607d8d48b24d3e | p@chr3:72925786..72925790, + |
| 1.48e-36 | FFCP PHASE2:Hg19::chr12:110888103..110888172,-#_1a218e86d0f5311eafef0d461d6b290d | p1@ARPC3 |
| 1.48e-36 | FFCP PHASE1:Hg19::chr12:110888103..110888172,-#_1a218e86d0f5311eafef0d461d6b290d | p1@ARPC3 |
| 4.77e-36 | FFCP PHASE2:Mm9::chr14:106660467..106660471,-#_09f1ea1d06a977776b0493f07aefb56d | p1@ENSMUST00000083259 |
| 4.77e-36 | FFCP PHASE1:Mm9::chr14:106660467..106660471,-#_09f1ea1d06a977776b0493f07aefb56d | p1@ENSMUST00000083259 |
| 5.63e-36 | FFCP PHASE1:Hg19::chr18:18691563..18691610,-#_fe1159d2aadf1ded7a2826b94472bcf4 | p4@ROCK1 |
| 5.63e-36 | FFCP PHASE2:Hg19::chr18:18691563..18691610,-#_fe1159d2aadf1ded7a2826b94472bcf4 | p4@ROCK1 |
| 6.93e-36 | FFCP PHASE2:Hg19::chr1:46016703..46016755,+#_fcb1a508311dac057a42d4e67ee66b80 | p2@AKR1A1 |
| 6.93e-36 | FFCP PHASE1:Hg19::chr1:46016703..46016755,+#_fcb1a508311dac057a42d4e67ee66b80 | p2@AKR1A1 |
| 7.68e-36 | FFCP PHASE1:Hg19::chr15:90358048..90358103,-#_940b4d9aebd6a5d03f4d2141cdfcb96c | p1@ANPEP |
| 7.68e-36 | FFCP PHASE2:Hg19::chr15:90358048..90358103,-#_940b4d9aebd6a5d03f4d2141cdfcb96c | p1@ANPEP |
| 8.08e-36 | FFCP PHASE1:Hg19::chr1:20987936..20987969,-#_8663f5472807c8b32a2c7402c337338b | p2@DDOST |
| 8.08e-36 | FFCP PHASE2:Hg19::chr1:20987936..20987969,-#_8663f5472807c8b32a2c7402c337338b | p2@DDOST |
| 1.33e-35 | FFCP PHASE1:Mm9::chr10:104477319..104477348,+#_627c683cce30ca7ae0d8306645a3c2c2 | p1@ENSMUST00000082498 |
| 1.33e-35 | FFCP PHASE2:Mm9::chr10:104477319..104477348,+#_627c683cce30ca7ae0d8306645a3c2c2 | p1@ENSMUST00000082498 |
| 3.68e-35 | FFCP PHASE1:Hg19::chr2:102091566..102091581,-#_877c1a2881824b54bf87fcd371f20da9 | p1@RFX8 |
| 3.68e-35 | FFCP PHASE2:Hg19::chr2:102091566..102091581,-#_877c1a2881824b54bf87fcd371f20da9 | p1@RFX8 |
| 4.08e-35 | FFCP PHASE1:Hg19::chr11:504942..504959,-#_9a187166dd0cb4d77c8ca28e01a1e6e8 | p5@RNH1 |
| 4.08e-35 | FFCP PHASE2:Hg19::chr11:504942..504959,-#_9a187166dd0cb4d77c8ca28e01a1e6e8 | p5@RNH1 |
| 4.14e-35 | FFCP PHASE2:Hg19::chr9:35112376..35112395,-#_30bdd1db6024563b1a62f3f91789c6ae | p@chr9:35112376..35112395, - |
| 4.14e-35 | FFCP PHASE1:Hg19::chr9:35112376..35112395,-#_30bdd1db6024563b1a62f3f91789c6ae | p@chr9:35112376..35112395, - |
| 4.18e-35 | FFCP PHASE1:Mm9::chr5:115939562..115939592,-#_940273588e9413fdc84f105aba9527c9 | p@chr5:115939562..115939592, - |
| 4.18e-35 | FFCP PHASE2:Mm9::chr5:115939562..115939592,-#_940273588e9413fdc84f105aba9527c9 | p@chr5:115939562..115939592, - |
| 4.79e-35 | FFCP PHASE2:Mm9::chr5:115939465..115939467,+#_ca5f7cfa1ffe72d4c6899f171c2c1cd3 | p1@ENSMUST00000102044 |
| 4.79e-35 | FFCP PHASE1:Mm9::chr5:115939465..115939467,+#_ca5f7cfa1ffe72d4c6899f171c2c1cd3 | p1@ENSMUST00000102044 |
| 5.54e-35 | FFCP PHASE2:Hg19::chr10:17271909..17272033,-#_d2df03533fe5b80334ba137067e470b6 | p1@uc001iot.1 |
| 5.54e-35 | FFCP PHASE1:Hg19::chr10:17271909..17272033,-#_d2df03533fe5b80334ba137067e470b6 | p1@uc001iot.1 |
| 9.86e-35 | FFCP PHASE1:Hg19::chrX:48432892..48432916,+#_a29ea57de99e7771e08cf19f00b4cf36 | p1@RBM3 |
| 9.86e-35 | FFCP PHASE2:Hg19::chrX:48432892..48432916,+#_a29ea57de99e7771e08cf19f00b4cf36 | p1@RBM3 |
| 1.27e-34 | FFCP PHASE1:Hg19::chr20:61584026..61584096,+#_aaa81e897b888cb49d78cd8eb0b518bb | p1@SLC17A9 |
| 1.27e-34 | FFCP PHASE2:Hg19::chr20:61584026..61584096,+#_aaa81e897b888cb49d78cd8eb0b518bb | p1@SLC17A9 |
| 1.48e-34 | FFCP PHASE2:Mm9::chr11:68834407..68834410,+#_bde1850e4ecffc8882f604a2f5fe5c54 | p@chr11:68834407..68834410, + |
| 1.48e-34 | FFCP PHASE1:Mm9::chr11:68834407..68834410,+#_bde1850e4ecffc8882f604a2f5fe5c54 | p@chr11:68834407..68834410, + |
| 3.9e-34 | FFCP PHASE2:Mm9::chr15:80870069..80870076,+#_9ff249a559a232a6816f757ff04e11ad | p1@ENSMUST00000082653 |
| 3.9e-34 | FFCP PHASE1:Mm9::chr15:80870069..80870076,+#_9ff249a559a232a6816f757ff04e11ad | p1@ENSMUST00000082653 |
| 4.09e-34 | FFCP PHASE1:Hg19::chr12:75874561..75874574,+#_a79694289e21a49beaaf80e05815336c | p3@GLIPR1 |
| 4.09e-34 | FFCP PHASE2:Hg19::chr12:75874561..75874574,+#_a79694289e21a49beaaf80e05815336c | p3@GLIPR1 |
| 5.21e-34 | FFCP PHASE2:Hg19::chr2:192542577..192542595,-#_aad44e24b6724d2dc7c6aa6d5e3c53c1 | p@chr2:192542577..192542595, - |
| 5.21e-34 | FFCP PHASE1:Hg19::chr2:192542577..192542595,-#_aad44e24b6724d2dc7c6aa6d5e3c53c1 | p@chr2:192542577..192542595, - |
| 7.39e-34 | FFCP PHASE2:Hg19::chr12:75874525..75874549,+#_0f42e00e3b9f650ffd93a24e58857852 | p1@GLIPR1 |
| 7.39e-34 | FFCP PHASE1:Hg19::chr12:75874525..75874549,+#_0f42e00e3b9f650ffd93a24e58857852 | p1@GLIPR1 |
| 7.52e-34 | FFCP PHASE1:Mm9::chr2:3208787..3208789,-#_060f4dfa4fd852460945a3aeb3272eda | p1@ENSMUST00000082795 |
| 7.52e-34 | FFCP PHASE2:Mm9::chr2:3208787..3208789,-#_060f4dfa4fd852460945a3aeb3272eda | p1@ENSMUST00000082795 |
| 8.98e-34 | FFCP PHASE2:Hg19::chr3:50378235..50378286,-#_0ffe7c02760babc1d44152362a8342f9 | p2@RASSF1 |
| 8.98e-34 | FFCP PHASE1:Hg19::chr3:50378235..50378286,-#_0ffe7c02760babc1d44152362a8342f9 | p2@RASSF1 |
| 1.02e-33 | FFCP PHASE1:Hg19::chr14:73930324..73930350,-#_93733e89a8d7a0b4b96a919d766ad87c | p2@NUMB |
| 1.02e-33 | FFCP PHASE2:Hg19::chr14:73930324..73930350,-#_93733e89a8d7a0b4b96a919d766ad87c | p2@NUMB |
| 1.08e-33 | FFCP PHASE1:Hg19::chr21:26934434..26934452,+#_a04af738bc8ca926ba6aff3b861cf667 | p1@MIR155HG |
| 1.08e-33 | FFCP PHASE2:Hg19::chr21:26934434..26934452,+#_a04af738bc8ca926ba6aff3b861cf667 | p1@MIR155HG |
