UBERON:0002081: Difference between revisions
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|subset=uberon_slim;;vertebrate_core | |subset=uberon_slim;;vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0010227 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
Revision as of 13:30, 27 June 2012
| Name: | cardiac atrium | ||
|---|---|---|---|
| Definition: | "Cardiac chamber which consists of a wall that surrounds the cavity of an atrium.[FMA]" [FMA:FMA, Wikipedia:Heart_atrium] | ||
| Xrefs: |
| ||
| Synonyms: |
"atria" EXACT PLURAL [] "atrial tissue" RELATED [BTO:0000903] "atrium" EXACT [ZFA:0000471] "atrium of heart" EXACT [] "Cardiac atria" EXACT PLURAL [] "cardiac atria" EXACT PLURAL [] "heart atrium" EXACT [] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_7099-MA_0000073 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004151(cardiac chamber) |
|---|---|
| develops_from: | UBERON:0010227(future cardiac atrium) |
Children
| is a: | UBERON:0002078 (right cardiac atrium),UBERON:0002079 (left cardiac atrium) |
|---|---|
| part of: | UBERON:0005946 (outflow tract of atrium) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10079-102A7 (left atrium, adult, donor1)
- 10207-103F9 (heart - tricuspid valve, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002081 (cardiac atrium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.99e-131 | FFCP PHASE2:Hg19::chr1:11905799..11905806,-#_2b1dcff6e0a3a0c561c7bf35a52911da | p@chr1:11905799..11905806, - |
| 8.99e-131 | FFCP PHASE1:Hg19::chr1:11905799..11905806,-#_2b1dcff6e0a3a0c561c7bf35a52911da | p@chr1:11905799..11905806, - |
| 8.99e-131 | FFCP PHASE2:Hg19::chr1:11907265..11907271,-#_2b1dcff6e0a3a0c561c7bf35a52911da | p9@NPPA |
| 8.99e-131 | FFCP PHASE1:Hg19::chr1:11907265..11907271,-#_2b1dcff6e0a3a0c561c7bf35a52911da | p9@NPPA |
| 9.38e-99 | FFCP PHASE1:Hg19::chr7:44179972..44179982,-#_32b2f753d39295e6ae32c2fa6bbc4ea4 | p2@MYL7 |
| 9.38e-99 | FFCP PHASE2:Hg19::chr7:44179972..44179982,-#_32b2f753d39295e6ae32c2fa6bbc4ea4 | p2@MYL7 |
| 9.38e-99 | FFCP PHASE2:Hg19::chr1:11905830..11905839,-#_32b2f753d39295e6ae32c2fa6bbc4ea4 | p@chr1:11905830..11905839, - |
| 9.38e-99 | FFCP PHASE1:Hg19::chr1:11905830..11905839,-#_32b2f753d39295e6ae32c2fa6bbc4ea4 | p@chr1:11905830..11905839, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:11907474..11907481,-#_f9c851a3d8da112289a57e14b3a86606 | p10@NPPA |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:99390735..99390743,-#_f9c851a3d8da112289a57e14b3a86606 | p@chr5:99390735..99390743, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:79385898..79385905,-#_f9c851a3d8da112289a57e14b3a86606 | p@chr17:79385898..79385905, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:4735761..4735787,-#_f9c851a3d8da112289a57e14b3a86606 | p@chr12:4735761..4735787, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:44180643..44180652,-#_f9c851a3d8da112289a57e14b3a86606 | p3@MYL7 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:86272097..86272099,+#_f9c851a3d8da112289a57e14b3a86606 | p@chr15:86272097..86272099, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:44180643..44180652,-#_f9c851a3d8da112289a57e14b3a86606 | p3@MYL7 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:92678409..92678410,-#_f9c851a3d8da112289a57e14b3a86606 | p@chr10:92678409..92678410, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr15:86272097..86272099,+#_f9c851a3d8da112289a57e14b3a86606 | p@chr15:86272097..86272099, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:43676416..43676417,-#_f9c851a3d8da112289a57e14b3a86606 | p@chr1:43676416..43676417, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:92678409..92678410,-#_f9c851a3d8da112289a57e14b3a86606 | p@chr10:92678409..92678410, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:4735761..4735787,-#_f9c851a3d8da112289a57e14b3a86606 | p@chr12:4735761..4735787, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:43676416..43676417,-#_f9c851a3d8da112289a57e14b3a86606 | p@chr1:43676416..43676417, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:11907474..11907481,-#_f9c851a3d8da112289a57e14b3a86606 | p10@NPPA |
| 1.55e-98 | FFCP PHASE2:Hg19::chr5:99390735..99390743,-#_f9c851a3d8da112289a57e14b3a86606 | p@chr5:99390735..99390743, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:79385898..79385905,-#_f9c851a3d8da112289a57e14b3a86606 | p@chr17:79385898..79385905, - |
| 2.56e-98 | FFCP PHASE1:Hg19::chr7:44178491..44178498,-#_46aea807006a58a53df862d9da109837 | p@chr7:44178491..44178498, - |
| 2.56e-98 | FFCP PHASE2:Hg19::chr7:44178491..44178498,-#_46aea807006a58a53df862d9da109837 | p@chr7:44178491..44178498, - |
| 4.22e-98 | FFCP PHASE2:Hg19::chr12:114886577..114886589,-#_01636d5581514cbfcb7278186a3ed408 | p@chr12:114886577..114886589, - |
| 4.22e-98 | FFCP PHASE1:Hg19::chr12:114886577..114886589,-#_01636d5581514cbfcb7278186a3ed408 | p@chr12:114886577..114886589, - |
| 1.56e-79 | FFCP PHASE2:Hg19::chr10:92725775..92725780,+#_2b64b51266786b39dbb24a542400a39d | p@chr10:92725775..92725780, + |
| 1.56e-79 | FFCP PHASE1:Hg19::chr10:92725775..92725780,+#_2b64b51266786b39dbb24a542400a39d | p@chr10:92725775..92725780, + |
| 3.49e-79 | FFCP PHASE1:Hg19::chr15:86266279..86266292,+#_81ca87df34999fe7325f42c965dae553 | p@chr15:86266279..86266292, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr15:86266279..86266292,+#_81ca87df34999fe7325f42c965dae553 | p@chr15:86266279..86266292, + |
| 1.16e-78 | FFCP PHASE2:Hg19::chr2:179585314..179585321,-#_668268131ff8e7b5ca7b1dbd77b46337 | p@chr2:179585314..179585321, - |
| 1.16e-78 | FFCP PHASE1:Hg19::chr2:179585314..179585321,-#_668268131ff8e7b5ca7b1dbd77b46337 | p@chr2:179585314..179585321, - |
| 1.45e-66 | FFCP PHASE2:Hg19::chr12:114886372..114886399,-#_5c902b50cc464f798c98ac63b263dfa6 | p@chr12:114886372..114886399, - |
| 1.45e-66 | FFCP PHASE1:Hg19::chr12:114886372..114886399,-#_5c902b50cc464f798c98ac63b263dfa6 | p@chr12:114886372..114886399, - |
| 2.03e-66 | FFCP PHASE1:Hg19::chr13:111935498..111935509,+#_e706ac816e8054303479d3e4feec035f | p35@ARHGEF7 |
| 2.03e-66 | FFCP PHASE2:Hg19::chr13:111935498..111935509,+#_e706ac816e8054303479d3e4feec035f | p35@ARHGEF7 |
| 2.84e-66 | FFCP PHASE1:Hg19::chr14:23854202..23854211,-#_2045b0aa06c36bb040b7f93d3fcb8866 | p@chr14:23854202..23854211, - |
| 2.84e-66 | FFCP PHASE2:Hg19::chr14:23854202..23854211,-#_2045b0aa06c36bb040b7f93d3fcb8866 | p@chr14:23854202..23854211, - |
| 3.96e-66 | FFCP PHASE1:Hg19::chrX:78619044..78619053,-#_6ec739f918aece336edc93c58d1b3559 | p10@ITM2A |
| 3.96e-66 | FFCP PHASE2:Hg19::chrX:78619044..78619053,-#_6ec739f918aece336edc93c58d1b3559 | p10@ITM2A |
| 5.53e-66 | FFCP PHASE2:Hg19::chr2:179396981..179396986,-#_0e90eb70c585097d2962fb698407a717 | p147@TTN |
| 5.53e-66 | FFCP PHASE1:Hg19::chr2:179396981..179396986,-#_0e90eb70c585097d2962fb698407a717 | p147@TTN |
| 1.51e-57 | FFCP PHASE1:Hg19::chr1:78408547..78408558,+#_dcc10b83d1a1f10a70f4fe1de134c47b | p@chr1:78408547..78408558, + |
| 1.51e-57 | FFCP PHASE2:Hg19::chr1:78408547..78408558,+#_dcc10b83d1a1f10a70f4fe1de134c47b | p@chr1:78408547..78408558, + |
| 2.69e-57 | FFCP PHASE2:Hg19::chr1:11907940..11907947,-#_a5b841e03080c266dfa8ea7e0e8d9e8b | p2@NPPA |
| 2.69e-57 | FFCP PHASE1:Hg19::chr1:11907940..11907947,-#_a5b841e03080c266dfa8ea7e0e8d9e8b | p2@NPPA |
| 3.58e-57 | FFCP PHASE2:Hg19::chr1:11907441..11907453,-#_d8d46845d9d3e7cd34a39249349209a0 | p3@NPPA |
| 3.58e-57 | FFCP PHASE1:Hg19::chr1:11907441..11907453,-#_d8d46845d9d3e7cd34a39249349209a0 | p3@NPPA |
| 4.77e-57 | FFCP PHASE2:Hg19::chr2:179396338..179396348,-#_f73b13ee40cce04138598616c44794dc | p@chr2:179396338..179396348, - |
| 4.77e-57 | FFCP PHASE1:Hg19::chr2:179396338..179396348,-#_f73b13ee40cce04138598616c44794dc | p@chr2:179396338..179396348, - |
| 6.36e-57 | FFCP PHASE2:Hg19::chr1:12520398..12520406,+#_251e74ba36c0b54e220a36dd91fd4321 | p@chr1:12520398..12520406, + |
| 6.36e-57 | FFCP PHASE1:Hg19::chr1:12520398..12520406,+#_251e74ba36c0b54e220a36dd91fd4321 | p@chr1:12520398..12520406, + |
| 8.47e-57 | FFCP PHASE2:Hg19::chrX:112324334..112324339,-#_ebb51c7f54edd87afd0950db5c701c6a | p@chrX:112324334..112324339, - |
| 8.47e-57 | FFCP PHASE1:Hg19::chrX:112324334..112324339,-#_ebb51c7f54edd87afd0950db5c701c6a | p@chrX:112324334..112324339, - |
| 1.88e-50 | FFCP PHASE2:Hg19::chr1:163112604..163112616,-#_56f8e70c1b377f1854ac90fe635e779b | p@chr1:163112604..163112616, - |
| 1.88e-50 | FFCP PHASE2:Hg19::chr4:95508126..95508142,+#_56f8e70c1b377f1854ac90fe635e779b | p@chr4:95508126..95508142, + |
| 1.88e-50 | FFCP PHASE1:Hg19::chr4:95508126..95508142,+#_56f8e70c1b377f1854ac90fe635e779b | p@chr4:95508126..95508142, + |
| 1.88e-50 | FFCP PHASE1:Hg19::chr2:179504505..179504514,-#_56f8e70c1b377f1854ac90fe635e779b | p@chr2:179504505..179504514, - |
| 1.88e-50 | FFCP PHASE1:Hg19::chr1:163112604..163112616,-#_56f8e70c1b377f1854ac90fe635e779b | p@chr1:163112604..163112616, - |
| 1.88e-50 | FFCP PHASE2:Hg19::chr2:179504505..179504514,-#_56f8e70c1b377f1854ac90fe635e779b | p@chr2:179504505..179504514, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr4:8321842..8321846,+#_14b54e6df25b816253a74468f5ee1b03 | p5@ENST00000509453 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr1:11907408..11907415,+#_14b54e6df25b816253a74468f5ee1b03 | p@chr1:11907408..11907415, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr12:94730118..94730123,-#_14b54e6df25b816253a74468f5ee1b03 | p13@CCDC41 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr12:70004523..70004545,-#_14b54e6df25b816253a74468f5ee1b03 | p3@LRRC10 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr1:11907408..11907415,+#_14b54e6df25b816253a74468f5ee1b03 | p@chr1:11907408..11907415, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr4:8321842..8321846,+#_14b54e6df25b816253a74468f5ee1b03 | p5@ENST00000509453 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_14b54e6df25b816253a74468f5ee1b03 | p@chr2:179656442..179656451, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr15:26640258..26640266,+#_14b54e6df25b816253a74468f5ee1b03 | p4@ENST00000451579 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr1:11906044..11906050,-#_14b54e6df25b816253a74468f5ee1b03 | p@chr1:11906044..11906050, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr15:26640258..26640266,+#_14b54e6df25b816253a74468f5ee1b03 | p4@ENST00000451579 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr1:11906044..11906050,-#_14b54e6df25b816253a74468f5ee1b03 | p@chr1:11906044..11906050, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_14b54e6df25b816253a74468f5ee1b03 | p@chr2:179656442..179656451, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr1:11907415..11907418,-#_14b54e6df25b816253a74468f5ee1b03 | p15@NPPA |
| 2.74e-50 | FFCP PHASE2:Hg19::chr12:94730118..94730123,-#_14b54e6df25b816253a74468f5ee1b03 | p13@CCDC41 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr1:11907415..11907418,-#_14b54e6df25b816253a74468f5ee1b03 | p15@NPPA |
| 2.74e-50 | FFCP PHASE1:Hg19::chr15:26640282..26640290,+#_14b54e6df25b816253a74468f5ee1b03 | p5@ENST00000451579 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr15:26640282..26640290,+#_14b54e6df25b816253a74468f5ee1b03 | p5@ENST00000451579 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr1:109849679..109849688,-#_14b54e6df25b816253a74468f5ee1b03 | p3@MYBPHL |
| 2.74e-50 | FFCP PHASE2:Hg19::chr1:11907440..11907450,+#_14b54e6df25b816253a74468f5ee1b03 | p@chr1:11907440..11907450, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr1:109849679..109849688,-#_14b54e6df25b816253a74468f5ee1b03 | p3@MYBPHL |
| 2.74e-50 | FFCP PHASE1:Hg19::chr1:11907440..11907450,+#_14b54e6df25b816253a74468f5ee1b03 | p@chr1:11907440..11907450, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr7:97501400..97501407,-#_14b54e6df25b816253a74468f5ee1b03 | p16@ASNS |
| 2.74e-50 | FFCP PHASE2:Hg19::chr1:11907318..11907327,-#_14b54e6df25b816253a74468f5ee1b03 | p7@NPPA |
| 2.74e-50 | FFCP PHASE1:Hg19::chr1:11907318..11907327,-#_14b54e6df25b816253a74468f5ee1b03 | p7@NPPA |
| 2.74e-50 | FFCP PHASE2:Hg19::chr7:97501400..97501407,-#_14b54e6df25b816253a74468f5ee1b03 | p16@ASNS |
| 2.74e-50 | FFCP PHASE1:Hg19::chr12:70004523..70004545,-#_14b54e6df25b816253a74468f5ee1b03 | p3@LRRC10 |
| 4.0e-50 | FFCP PHASE2:Hg19::chr20:44035965..44035976,+#_d2d137ea6c35cf2b408c24c7dc3f992a | p30@DBNDD2 |
| 4.0e-50 | FFCP PHASE1:Hg19::chr20:44035965..44035976,+#_d2d137ea6c35cf2b408c24c7dc3f992a | p30@DBNDD2 |
| 4.0e-50 | FFCP PHASE1:Hg19::chr14:23863442..23863452,-#_d2d137ea6c35cf2b408c24c7dc3f992a | p@chr14:23863442..23863452, - |
| 4.0e-50 | FFCP PHASE2:Hg19::chr14:23863442..23863452,-#_d2d137ea6c35cf2b408c24c7dc3f992a | p@chr14:23863442..23863452, - |
| 4.0e-50 | FFCP PHASE2:Hg19::chr5:123739302..123739319,-#_d2d137ea6c35cf2b408c24c7dc3f992a | p@chr5:123739302..123739319, - |
| 4.0e-50 | FFCP PHASE1:Hg19::chr5:123739302..123739319,-#_d2d137ea6c35cf2b408c24c7dc3f992a | p@chr5:123739302..123739319, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr18:28807557..28807562,-#_83f469aaacaa8c3bf98c43e6be636518 | p@chr18:28807557..28807562, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr18:4003453..4003457,+#_83f469aaacaa8c3bf98c43e6be636518 | p@chr18:4003453..4003457, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr6:70647888..70647891,+#_83f469aaacaa8c3bf98c43e6be636518 | p@chr6:70647888..70647891, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr11:45274102..45274110,-#_83f469aaacaa8c3bf98c43e6be636518 | p@chr11:45274102..45274110, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr14:23862118..23862122,-#_83f469aaacaa8c3bf98c43e6be636518 | p18@MYH6 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr14:23862118..23862122,-#_83f469aaacaa8c3bf98c43e6be636518 | p18@MYH6 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "One of four heart chambers.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "One of two chambers of the heart which receive blood from the veins and forces it by muscular contration to the ventricle.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
