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MCL coexpression mm9:359: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004119!2.06e-18!118;UBERON:0000925!2.06e-18!118;UBERON:0006595!2.06e-18!118;UBERON:0005409!5.74e-18!47;UBERON:0001007!1.26e-17!116;UBERON:0001555!1.26e-17!116;UBERON:0007026!1.26e-17!116;UBERON:0004921!1.45e-16!114;UBERON:0000160!1.22e-14!31;UBERON:0004923!2.65e-11!24;UBERON:0000344!6.63e-09!15;UBERON:0001242!7.81e-08!13;UBERON:0000060!7.81e-08!13;UBERON:0001262!7.81e-08!13;UBERON:0004786!7.81e-08!13
}}
}}

Revision as of 20:18, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:70461088..70461109,+p3@Rnf167
Mm9::chr11:98822081..98822092,+p14@Rara
Mm9::chr13:100972065..100972083,-p1@Naip2
Mm9::chr13:75977345..75977376,+p1@Glrx
Mm9::chr17:35263372..35263387,+p2@D17H6S53E
Mm9::chr1:155599076..155599130,+p3@Rnasel
Mm9::chr1:155599132..155599164,+p2@Rnasel
Mm9::chr2:143741009..143741073,+p3@Dstn
Mm9::chr2:143761989..143761993,+p@chr2:143761989..143761993
+
Mm9::chr3:108003333..108003363,-p2@Cyb561d1
Mm9::chr4:6292843..6292867,+p1@Sdcbp
Mm9::chr5:115992915..115992946,+p2@Pxn
Mm9::chr5:115992953..115992965,+p4@Pxn
Mm9::chr5:115992981..115993016,+p3@Pxn
Mm9::chr6:136610331..136610387,-p1@Plbd1
Mm9::chr7:112548505..112548537,-p1@Fam160a2
Mm9::chr7:63217794..63217831,-p1@Nipa2
Mm9::chr8:3631109..3631169,+p1@Stxbp2
Mm9::chr8:64406910..64406924,+p1@Ddx60
Mm9::chr8:74685233..74685268,+p1@Rab8a
Mm9::chr9:5298669..5298694,+p1@Casp1
Mm9::chr9:66440886..66440906,-p4@Usp3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
endoderm-derived structure2.06e-18118
endoderm2.06e-18118
presumptive endoderm2.06e-18118
gastrointestinal system5.74e-1847
digestive system1.26e-17116
digestive tract1.26e-17116
primitive gut1.26e-17116
subdivision of digestive tract1.45e-16114
intestine1.22e-1431
organ component layer2.65e-1124
mucosa6.63e-0915
intestinal mucosa7.81e-0813
anatomical wall7.81e-0813
wall of intestine7.81e-0813
gastrointestinal system mucosa7.81e-0813


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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