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MCL coexpression mm9:1645: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000107!1.03e-07!9
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000010!2.68e-09!11;UBERON:0001444!3.93e-09!11;UBERON:0003102!2.44e-08!22;UBERON:0001008!2.79e-08!19;UBERON:0000033!8.84e-08!13;UBERON:0005085!8.84e-08!13;UBERON:0002410!1.03e-07!9;UBERON:0004121!1.10e-07!95;UBERON:0000924!1.10e-07!95;UBERON:0006601!1.10e-07!95;UBERON:0000970!1.40e-07!9;UBERON:0000019!1.40e-07!9;UBERON:0000047!1.40e-07!9;UBERON:0010312!1.40e-07!9;UBERON:0004088!1.40e-07!9;UBERON:0002104!1.40e-07!9;UBERON:0001456!1.40e-07!9;UBERON:0003072!1.40e-07!9;UBERON:0004128!1.40e-07!9;UBERON:0003071!1.40e-07!9;UBERON:0006554!1.51e-07!18;UBERON:0000020!5.23e-07!12;UBERON:0001032!5.23e-07!12;UBERON:0004456!5.23e-07!12
}}
}}

Revision as of 17:13, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr13:40826236..40826248,-p8@Tfap2a
Mm9::chr13:40826364..40826398,-p@chr13:40826364..40826398
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Mm9::chr13:40826413..40826424,-p@chr13:40826413..40826424
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Mm9::chr13:40829137..40829205,-p1@Tfap2a
Mm9::chr13:40829337..40829360,-p5@Tfap2a


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
autonomic neuron1.03e-079

Uber Anatomy
Ontology termp-valuen
peripheral nervous system2.68e-0911
subdivision of head3.93e-0911
surface structure2.44e-0822
renal system2.79e-0819
head8.84e-0813
ectodermal placode8.84e-0813
autonomic nervous system1.03e-079
ectoderm-derived structure1.10e-0795
ectoderm1.10e-0795
presumptive ectoderm1.10e-0795
eye1.40e-079
camera-type eye1.40e-079
simple eye1.40e-079
immature eye1.40e-079
ocular region1.40e-079
visual system1.40e-079
face1.40e-079
optic cup1.40e-079
optic vesicle1.40e-079
eye primordium1.40e-079
urinary system structure1.51e-0718
sense organ5.23e-0712
sensory system5.23e-0712
entire sense organ system5.23e-0712


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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