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MCL coexpression mm9:191: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000160!1.17e-25!31;UBERON:0005409!2.01e-18!47;UBERON:0000344!2.78e-14!15;UBERON:0001242!2.80e-11!13;UBERON:0000060!2.80e-11!13;UBERON:0001262!2.80e-11!13;UBERON:0004786!2.80e-11!13;UBERON:0004923!4.48e-09!24;UBERON:0002108!8.44e-07!4
|ontology_enrichment_uberon=UBERON:0000160!1.17e-25!31;UBERON:0005409!2.01e-18!47;UBERON:0000344!2.78e-14!15;UBERON:0001242!2.80e-11!13;UBERON:0000060!2.80e-11!13;UBERON:0001262!2.80e-11!13;UBERON:0004786!2.80e-11!13;UBERON:0004923!4.48e-09!24;UBERON:0002108!8.44e-07!4
|tfbs_overrepresentation_for_novel_motifs=0.0151974,4.70741,0.0563333,0.241985,0.381291,0.02557,0.0497618,1.47522,0.775985,0.189148,0.036867,0.0460055,0.522741,1.17237,0.265421,0,0.138669,2.06445,0.0566521,2.34101,0.927215,0.0230533,0.0534624,0.117592,0.0602981,0.491579,4.1144,1.24817,0.184769,3.16412,0.113518,0.197802,0.106965,0.321863,0.00325416,0.364985,0.00173006,0.0449101,0.602498,6.30708,0.0482466,0.522308,0.0316412,1.2208,0.122523,0.225947,0.0987896,0.0342152,0.263633,0.543949,0.129394,1.38945,0.309693,0.293909,0.306656,0.0561765,0.0321014,1.03012,0.698515,0.448551,0.1854,0.0773893,1.10861,0.123566,0.0600525,0.14508,0.411886,0.714043,0.182553,0.582319,0.464965,0.752464,1.84947e-05,0.331647,0.000100674,0.0615039,4.54211,0.311609,0.175032,0.0410536,2.99212,0.14818,0.0768051,0.00959939,0.248509,8.91763e-05,0.502107,0.020023,0.101055,0.864265,0.469,1.29724,0.205896,0.602622,0.0010377,0.0542217,0.226963,0.207688,0.325838,0.0548246,1.25852,0.197626,0.281356,0.129705,1.89792,0.281409,0.16203,1.3034,0.121528,0.040029,0.175173,0.282632,0.117682,0.0382686,0.47488,0.216574,0.000432918,0.100565,0.139372,0.0920176,0.33573,0.363366,0.495139,1.07052,3.2843,0.177244,0.431286,1.73479,0.410666,0.0565327,0.269307,0.0211704,0.387083,0.478509,0.493018,0.462947,0.195082,0.118581,0.451982,1.21737,0.834426,0.415684,0.0685509,1.11572,0.12579,0.117838,0.329381,1.1788,0.946961,0.0518572,0.0212097,4.39023e-07,0.295048,3.52603,0.0606174,0.356288,1.39355,0.070795,1.24061,0.0164778,0.459848,0.247923,0.525668,1.59561,0.124089,0.211126,0.0387817,0.173366,0.553966
}}
}}

Revision as of 17:57, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:39245914..39245917,-p@chr10:39245914..39245917
-
Mm9::chr11:70318816..70318834,+p2@Tm4sf5
Mm9::chr11:70323193..70323295,+p3@Tm4sf5
Mm9::chr11:70323747..70323757,+p6@Tm4sf5
Mm9::chr11:70324670..70324684,-p@chr11:70324670..70324684
-
Mm9::chr13:34020263..34020267,-p@chr13:34020263..34020267
-
Mm9::chr15:58184283..58184304,-p@chr15:58184283..58184304
-
Mm9::chr15:75693658..75693668,+p@chr15:75693658..75693668
+
Mm9::chr15:75693673..75693697,+p@chr15:75693673..75693697
+
Mm9::chr15:75693709..75693724,+p@chr15:75693709..75693724
+
Mm9::chr19:11049139..11049152,-p2@Ms4a10
Mm9::chr19:11049154..11049200,-p1@Ms4a10
Mm9::chr19:43785907..43785950,+p5@Entpd7
Mm9::chr2:68259263..68259293,+p@chr2:68259263..68259293
+
Mm9::chr4:133899547..133899595,+p1@Slc30a2
Mm9::chr5:31252419..31252506,+p1@Abhd1
Mm9::chr5:31252508..31252520,+p1@ENSMUST00000006814
Mm9::chr6:129050956..129050965,-p2@Clec2e
Mm9::chr7:20536078..20536097,-p1@2210010C17Rik
Mm9::chr7:50890020..50890033,+p2@Ceacam18
Mm9::chr7:99968402..99968425,+p2@Rab30
Mm9::chr9:107493255..107493276,+p@chr9:107493255..107493276
+
Mm9::chr9:107493277..107493307,+p@chr9:107493277..107493307
+
Mm9::chr9:40128499..40128534,-p@chr9:40128499..40128534
-
Mm9::chr9:46049135..46049151,+p1@Apoa4
Mm9::chr9:46049553..46049572,+p@chr9:46049553..46049572
+
Mm9::chr9:46049587..46049613,+p@chr9:46049587..46049613
+
Mm9::chr9:46049601..46049682,-p@chr9:46049601..46049682
-
Mm9::chr9:46049631..46049643,+p@chr9:46049631..46049643
+
Mm9::chr9:46050350..46050364,+p@chr9:46050350..46050364
+
Mm9::chr9:46050368..46050461,+p@chr9:46050368..46050461
+
Mm9::chr9:46050406..46050418,-p@chr9:46050406..46050418
-
Mm9::chr9:46050472..46050525,+p@chr9:46050472..46050525
+
Mm9::chr9:46050527..46050532,+p@chr9:46050527..46050532
+
Mm9::chr9:46050533..46050543,+p@chr9:46050533..46050543
+
Mm9::chr9:46050554..46050575,+p@chr9:46050554..46050575
+
Mm9::chr9:46050577..46050605,+p@chr9:46050577..46050605
+
Mm9::chr9:46050606..46050626,+p@chr9:46050606..46050626
+
Mm9::chr9:46050633..46050670,+p@chr9:46050633..46050670
+
Mm9::chr9:46050688..46050713,+p@chr9:46050688..46050713
+
Mm9::chr9:46050715..46050725,+p@chr9:46050715..46050725
+
Mm9::chr9:46050739..46050748,+p@chr9:46050739..46050748
+
Mm9::chr9:46050805..46050816,+p@chr9:46050805..46050816
+
Mm9::chr9:46050877..46050884,+p@chr9:46050877..46050884
+
Mm9::chr9:46050983..46050990,+p@chr9:46050983..46050990
+
Mm9::chr9:46050996..46051001,+p@chr9:46050996..46051001
+
Mm9::chr9:46051084..46051095,+p@chr9:46051084..46051095
+
Mm9::chr9:46051114..46051123,+p@chr9:46051114..46051123
+
Mm9::chr9:46051125..46051130,+p@chr9:46051125..46051130
+
Mm9::chr9:46051188..46051198,+p@chr9:46051188..46051198
+
Mm9::chr9:46051225..46051236,+p@chr9:46051225..46051236
+
Mm9::chr9:46051523..46051542,-p1@ENSMUST00000156612
p1@uc009phe.1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0009203ribonucleoside triphosphate catabolic process0.038325164999839
GO:0030300regulation of cholesterol absorption0.038325164999839
GO:0030299cholesterol absorption0.038325164999839
GO:0044241lipid digestion0.038325164999839
GO:0009191ribonucleoside diphosphate catabolic process0.038325164999839
GO:0009143nucleoside triphosphate catabolic process0.038325164999839
GO:0009185ribonucleoside diphosphate metabolic process0.038325164999839
GO:0009134nucleoside diphosphate catabolic process0.038325164999839
GO:0042627chylomicron0.038325164999839
GO:0009261ribonucleotide catabolic process0.038325164999839
GO:0050892intestinal absorption0.0447711166420025
GO:0017110nucleoside-diphosphatase activity0.0455877250377747



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
brush border epithelial cell3.68e-106
gut absorptive cell3.68e-106
absorptive cell3.68e-106
enterocyte3.68e-106
columnar/cuboidal epithelial cell1.51e-087

Uber Anatomy
Ontology termp-valuen
intestine1.17e-2531
gastrointestinal system2.01e-1847
mucosa2.78e-1415
intestinal mucosa2.80e-1113
anatomical wall2.80e-1113
wall of intestine2.80e-1113
gastrointestinal system mucosa2.80e-1113
organ component layer4.48e-0924
small intestine8.44e-074


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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