FFCP PHASE1:Mm9::chr6:138375597..138375621,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=109593|HGNC=|MCL_coexpression_id=224|UniProt=E0CY33|association_with_transcript=-260bp_to_ENSMUST00000162932_5end|description=CAGE_peak_11_at_Lmo3_5end|id=chr6:138375597..138375621,-|ontology_enrichment_celltype=CL:0000117!1.10e-16!23;CL:0000337!1.10e-16!23;CL:0000540!1.90e-10!33;CL:0000047!1.90e-10!33;CL:0000031!1.90e-10!33;CL:0000404!1.90e-10!33;CL:0000393!2.87e-08!39;CL:0000211!2.87e-08!39;CL:0002613!1.46e-07!3;CL:0000120!1.85e-07!3;CL:0002319!3.65e-07!43;CL:0000221!6.39e-07!44;CL:0000133!6.39e-07!44|ontology_enrichment_celltype_v019_2=CL:0002613,3.62e-30,3;CL:0000117,1.77e-15,23;CL:0000337,1.77e-15,23;CL:0000120,2.32e-14,3;CL:0000540,8.72e-11,33;CL:0000047,8.72e-11,33;CL:0000031,8.72e-11,33;CL:0000404,8.72e-11,33;CL:0000393,4.07e-09,39;CL:0000211,4.07e-09,39;CL:0002319,2.93e-08,43;CL:0000221,4.54e-08,44;CL:0000133,4.54e-08,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000369!3.92e-11!5;UBERON:0002435!3.92e-11!5;UBERON:0000204!3.92e-11!5;UBERON:0010082!3.92e-11!5;UBERON:0002420!2.89e-09!8;UBERON:0007245!2.89e-09!8;UBERON:0010009!2.89e-09!8;UBERON:0010011!2.89e-09!8;UBERON:0000454!2.89e-09!8;UBERON:0002240!7.89e-08!6;UBERON:0005174!7.89e-08!6;UBERON:0001137!7.89e-08!6;UBERON:0002020!3.27e-07!34;UBERON:0001017!8.28e-07!73;UBERON:0005743!8.28e-07!73|ontology_enrichment_uberon_v019_2=UBERON:0000369,1.34e-31,5;UBERON:0002435,1.34e-31,5;UBERON:0000204,1.34e-31,5;UBERON:0010082,1.34e-31,5;UBERON:0002420,5.88e-20,8;UBERON:0007245,5.88e-20,8;UBERON:0010009,5.88e-20,8;UBERON:0010011,5.88e-20,8;UBERON:0000454,5.88e-20,8;UBERON:0002020,2.48e-07,34|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.64169629547276,5.28990979272033,0.633831403506179,0,0,0,0,0,0,0,0,0,0,0.856952953211411,0.220868540951614,0.367472397644862,0.287536413054709,0,0,0.127687338085188,0.46081959976873,3.56092976871523,4.02545631850602,3.12548022334056,0,0,0.30559649555362,0,2.42031857358475,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149790639404823,0.457500602818626,1.25654352112864,0.347648640384553,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0937017245597288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25984164595559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0,0.209613162627982,0.183843508450014,0.222246727801615,0.618105171716683,0,0.505394423527595,0,0,0.187283014939765,0.192075457214608,0.114870937911227,0.476293691283074,0.695305955669133,0,0,0.294397840268795,0.342869252385415,0.177475806159338,0.476872379894642,0.290692833264657,0.0941093804153306,0.338458431566706,0.182927972872773,0.526139422875686,0.543216455383447,1.12228454331548,0.355905054372522,0.29551344712669,0,0.154936841185966,0,1.24905288968973,0,0,0,0,0|short_description=p11@Lmo3}} | ||
|EntrezGene=109593 | |||
|HGNC= | |||
|MCL_coexpression_id=224 | |||
|UniProt=E0CY33 | |||
|association_with_transcript=-260bp_to_ENSMUST00000162932_5end | |||
|description=CAGE_peak_11_at_Lmo3_5end | |||
|id=chr6:138375597..138375621,- | |||
|ontology_enrichment_celltype=CL:0000117!1.10e-16!23;CL:0000337!1.10e-16!23;CL:0000540!1.90e-10!33;CL:0000047!1.90e-10!33;CL:0000031!1.90e-10!33;CL:0000404!1.90e-10!33;CL:0000393!2.87e-08!39;CL:0000211!2.87e-08!39;CL:0002613!1.46e-07!3;CL:0000120!1.85e-07!3;CL:0002319!3.65e-07!43;CL:0000221!6.39e-07!44;CL:0000133!6.39e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0002613,3.62e-30,3;CL:0000117,1.77e-15,23;CL:0000337,1.77e-15,23;CL:0000120,2.32e-14,3;CL:0000540,8.72e-11,33;CL:0000047,8.72e-11,33;CL:0000031,8.72e-11,33;CL:0000404,8.72e-11,33;CL:0000393,4.07e-09,39;CL:0000211,4.07e-09,39;CL:0002319,2.93e-08,43;CL:0000221,4.54e-08,44;CL:0000133,4.54e-08,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000369!3.92e-11!5;UBERON:0002435!3.92e-11!5;UBERON:0000204!3.92e-11!5;UBERON:0010082!3.92e-11!5;UBERON:0002420!2.89e-09!8;UBERON:0007245!2.89e-09!8;UBERON:0010009!2.89e-09!8;UBERON:0010011!2.89e-09!8;UBERON:0000454!2.89e-09!8;UBERON:0002240!7.89e-08!6;UBERON:0005174!7.89e-08!6;UBERON:0001137!7.89e-08!6;UBERON:0002020!3.27e-07!34;UBERON:0001017!8.28e-07!73;UBERON:0005743!8.28e-07!73 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000369,1.34e-31,5;UBERON:0002435,1.34e-31,5;UBERON:0000204,1.34e-31,5;UBERON:0010082,1.34e-31,5;UBERON:0002420,5.88e-20,8;UBERON:0007245,5.88e-20,8;UBERON:0010009,5.88e-20,8;UBERON:0010011,5.88e-20,8;UBERON:0000454,5.88e-20,8;UBERON:0002020,2.48e-07,34 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.64169629547276,5.28990979272033,0.633831403506179,0,0,0,0,0,0,0,0,0,0,0.856952953211411,0.220868540951614,0.367472397644862,0.287536413054709,0,0,0.127687338085188,0.46081959976873,3.56092976871523,4.02545631850602,3.12548022334056,0,0,0.30559649555362,0,2.42031857358475,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149790639404823,0.457500602818626,1.25654352112864,0.347648640384553,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0937017245597288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25984164595559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0,0.209613162627982,0.183843508450014,0.222246727801615,0.618105171716683,0,0.505394423527595,0,0,0.187283014939765,0.192075457214608,0.114870937911227,0.476293691283074,0.695305955669133,0,0,0.294397840268795,0.342869252385415,0.177475806159338,0.476872379894642,0.290692833264657,0.0941093804153306,0.338458431566706,0.182927972872773,0.526139422875686,0.543216455383447,1.12228454331548,0.355905054372522,0.29551344712669,0,0.154936841185966,0,1.24905288968973,0,0,0,0,0 | |||
|short_description=p11@Lmo3 | |||
}} |
Revision as of 09:15, 14 September 2013
Short description: | p11@Lmo3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_11_at_Lmo3_5end |
Coexpression cluster: | MCL_coexpression_mm9:224 |
Association with transcript: | -260bp_to_ENSMUST00000162932_5end |
EntrezGene: | Lmo3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
striatum neuron | 3.62e-30 | 3 |
CNS neuron (sensu Vertebrata) | 1.77e-15 | 23 |
neuroblast (sensu Vertebrata) | 1.77e-15 | 23 |
granule cell | 2.32e-14 | 3 |
neuron | 8.72e-11 | 33 |
neuronal stem cell | 8.72e-11 | 33 |
neuroblast | 8.72e-11 | 33 |
electrically signaling cell | 8.72e-11 | 33 |
electrically responsive cell | 4.07e-09 | 39 |
electrically active cell | 4.07e-09 | 39 |
neural cell | 2.93e-08 | 43 |
ectodermal cell | 4.54e-08 | 44 |
neurectodermal cell | 4.54e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
corpus striatum | 1.34e-31 | 5 |
striatum | 1.34e-31 | 5 |
ventral part of telencephalon | 1.34e-31 | 5 |
future corpus striatum | 1.34e-31 | 5 |
basal ganglion | 5.88e-20 | 8 |
nuclear complex of neuraxis | 5.88e-20 | 8 |
aggregate regional part of brain | 5.88e-20 | 8 |
collection of basal ganglia | 5.88e-20 | 8 |
cerebral subcortex | 5.88e-20 | 8 |
gray matter | 2.48e-07 | 34 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.