FFCP PHASE1:Mm9::chr3:126300217..126300331,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=108058|HGNC=|UniProt=Q6PHZ2,E9Q1V9|association_with_transcript=0bp_to_ENSMUST00000106400,ENSMUST00000106401,ENSMUST00000129293,ENSMUST00000131156_5end|description=CAGE_peak_3_at_Camk2d_5end|id=chr3:126300217..126300331,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.71e-11!51;UBERON:0004535!2.47e-09!23;UBERON:0001009!2.47e-09!23;UBERON:0007100!4.39e-08!18;UBERON:0000948!4.39e-08!18;UBERON:0005498!4.39e-08!18;UBERON:0004140!4.39e-08!18;UBERON:0009881!4.39e-08!18;UBERON:0004141!4.39e-08!18;UBERON:0003084!4.39e-08!18;UBERON:0007005!4.39e-08!18;UBERON:0004139!4.39e-08!18;UBERON:0004291!4.39e-08!18;UBERON:0004872!2.12e-07!33|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.69e-11,51;UBERON:0004535,2.46e-09,23;UBERON:0001009,2.46e-09,23;UBERON:0007100,4.38e-08,18;UBERON:0000948,4.38e-08,18;UBERON:0005498,4.38e-08,18;UBERON:0004140,4.38e-08,18;UBERON:0009881,4.38e-08,18;UBERON:0004141,4.38e-08,18;UBERON:0003084,4.38e-08,18;UBERON:0007005,4.38e-08,18;UBERON:0004139,4.38e-08,18;UBERON:0004291,4.38e-08,18;UBERON:0004872,2.11e-07,33;UBERON:0010314,5.23e-07,92|phase1_expression=4.16387002472464,33.850614541018,36.3999391511629,54.4435580352294,50.5904687245811,14.7733759282463,14.0167584357315,4.00282302668886,14.0788722151667,12.6394844213876,11.3003859028833,6.38177271962691,4.96482116800497,2.53519167015092,7.32841475994458,8.70643649776252,2.79824751251259,21.4514272443602,22.0754238105239,16.5511964201232,11.5658874605455,5.46100231604869,8.8807928307238,7.99962113967033,14.2233754261645,34.4539178469012,29.2918157388171,17.0222273821852,36.4844965356238,37.0484290747098,21.2861290229093,0,0,0,7.79899373328441,7.97926297720763,9.80012910059372,2.51118978442145,10.9386948233332,7.85285615960697,1.76469446409304,0,0.971020706062307,19.3881099682389,16.7271936512199,11.9305388905093,6.25913075478431,5.66865406589161,13.6205433295373,28.7756250629939,7.13930750289349,1.43752564364972,21.1406083632748,5.80289713609076,5.04140698713696,14.9210472900849,13.7536051170603,22.17389996793,4.04632921719196,3.1739458756322,3.1691570175309,6.43804610931351,1.77858959222228,3.5995988691256,0.988866362566974,2.8419204597844,2.09720077362883,3.07374644257244,0.518448061542388,0.405017814995072,0.630974884054146,14.2825492201902,15.2399293256613,1.71487118900936,1.15014565221884,4.5960939330501,23.1243350098716,33.5817699164044,37.6336006477797,2.76961204233407,2.65314166446988,6.25096044668112,25.1264699101243,32.0774687718058,23.9893249009592,23.8649154233671,22.3523538854592,9.87917062874093,30.6691082999395,24.1828992341714,24.9283460283443,5.16254326188832,2.719885334831,1.61910957491345,2.59910566979068,4.48026887097336,7.5839986871146,11.930122580464,8.3131521472918,9.54016851177919,8.16891834704747,19.2489716121477,17.8363667794652,21.3320010945999,8.87613268145978,10.6411143499541,11.1215377903252,9.24889425724386,33.6619248741323,28.0555642832519,4.16364784238726,10.3518262626128,12.9144678463393,10.399862198131,21.6363221129697,21.7403203000339,24.9666917411718,21.9791022518266,10.6153266233985,16.0149181447935,11.2629174414801,12.1218813283806,16.775258509631,78.1724728020831,76.2386012800976,44.1940705510863,1.1981512450592,2.99951365496704,2.1601938602421,45.3865637396613,10.980014467647,3.8952849154988,17.3824320192276,11.7629110371952,35.1161795305657,28.0677385107221,6.61955865027056,10.8234064430781,16.1742565397552,52.400022115732,2.73252930221678,4.36813998423599,3.78130472591233,7.53524089178575,13.8794458268709,15.8861013153214,14.3363638576385,73.7304606606195,0.431135985865684,1.51284864134255,2.11141348996739,2.84954452155847,2.78047249225598,8.70630416305416,5.76189981942242,0.796137067273973,1.40442637462647,0.772043721344145,0.568326998791185,17.3985648929822,18.0585066185444,15.8454614085693,20.1233025247429,19.2828947112456,19.9004575624718,23.950996309292,22.534965717568,34.9128373677837,30.6081320839074,45.4743875499094,45.6417397743168,45.0295961270024,45.2273237499564,32.0753340837289,7.78072809687271,4.11618449517138,62.4491499839378,21.6849464664106,1.2797295032114,3.48355007790658,3.73715637834071,8.67239155880373,8.89512175379481,13.3157938278791,28.4717436926707,14.822905925161,11.5614196048124,11.7384318504279,14.4273424468149,26.0657628509724,27.4495323340862,37.6377006450754,1.51734320762465,1.94222471436539,2.25415471346161,2.8511185898344,4.07300223052014,9.67874314486396,6.45012678667424,9.29943932271494,8.47793130343424,12.4631135561019,9.19003143970162,0.667380422864376,1.57247196090562,1.57403478669398,1.42002084971952,0.72353147925725,1.01850340712568,3.16465751195892,3.40483976227574,1.92192989231657,7.18841032636773,4.46569137202204,2.80833905803104,4.79899868099512,3.76734568396016,5.78932225636041,17.3667998756608,2.08440552947533,4.4000543639347,4.07388205860452,3.75504397261603,7.70528784232352,6.18913466303636,16.3912264200551,11.8226358079643,11.0732344824387,11.3212885746816,17.533374674584,19.1680329871144,18.0811323226889,10.5553898757491,7.61467957346193,9.34352118736169,6.62248191131358,39.4954451369968,34.2258124849233,7.21313759657372,21.2075578851673,5.04813151066011,5.0757036758563,10.3403230911743,5.4962823529087,9.13474563737816,7.07691326972081,9.71545684019746,7.59865230569411,9.09161889277004,12.2102100240287,11.2132667314532,2.67098405500883,4.56083486190013,16.0021019283359,5.30980553359851,0.485561272309963,0.604647113929502,0.754420319023592,2.65771703592696,3.68922177532713,4.9101375701962,6.5436071305951,2.13898427030833,5.37262488490887,5.27093042874994,7.21948802737308,27.9160476718106,3.24109969256358,1.16422815404479,2.7863814554107,3.3694644392032,3.0322698992352,4.60737257685939,8.52501857520878,26.5179030111993,19.2767184486076,14.7754026696824,17.3130565588554,11.6254387221052,7.84068024066026,5.84924485615369,5.25250879184196,28.2736411530955,37.455911006123,12.1318325366475,3.09580301944834,5.55583582109135,3.76736914009382,6.28793447516716,9.60868327467395,5.26933132980952,3.77868921273877,4.14599921413271,31.5041303944987,0.316335993581135,3.86306987541013,7.45236851670429,9.82714991268003,8.29777742235475,15.2396711414847,15.1255823977365,25.3903263724509,31.6260534831975,49.0858057338671,0.56369293868419,1.79419855252775,2.15096037594227,3.50012139019286,4.39143399824286,5.57555214119568,7.3935060346825,4.9477666240701,3.35549902162275,1.44950472495604,2.59227005632079,3.16011120628178,1.01362607645082,2.2596410576262,2.33857481360031,3.75956060901711,3.77494574084403,2.64429988943931,2.80610101631697,2.52416124870369,2.28620419965,2.92395936896837,2.14407337627455,2.30908419936791,3.15567635890236,15.1909357022192,2.44184548711471,0.358855426437903,1.34307693091263,36.7060228661162,22.8972620050442,7.14291334642334,5.57357785605571,23.0723167856267,9.60078132449013,11.0478056761722,11.4579102687879,11.3423100346834,10.2762377965596,16.6186657425734,9.45031500324528,21.1650965515384,21.7508356312418,20.192652158321,0.93408612825759,2.79317411380722,3.07320490357441,6.80698807791223,2.93458427679175,4.04455718590031,8.88986911206461,10.5077879191836,10.2694147069381,11.3713745293709,7.85785829659743,12.449338531481,9.36415074698824,7.74704344098918,8.61532034334199,9.0495801343784,9.50251472747815,8.48800570040302,9.06588981767275,10.1567254892734,9.60033906679163,12.4233064311536,11.4449371174714,11.1916740806893,10.4461412261017,10.4075967706762,8.96347067076586,5.26139422875686,11.2717414492065,12.906272248128,9.37216643180976,8.17587203717177,7.7753898202241,10.6906420418317,7.52335782826451,5.9954538705107,11.6965804222704,19.7681369724434,18.9375448748155,12.7943023089319,14.839541479707|short_description=p3@Camk2d}} | ||
|EntrezGene=108058 | |||
|HGNC= | |||
|UniProt=Q6PHZ2,E9Q1V9 | |||
|association_with_transcript=0bp_to_ENSMUST00000106400,ENSMUST00000106401,ENSMUST00000129293,ENSMUST00000131156_5end | |||
|description=CAGE_peak_3_at_Camk2d_5end | |||
|id=chr3:126300217..126300331,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.71e-11!51;UBERON:0004535!2.47e-09!23;UBERON:0001009!2.47e-09!23;UBERON:0007100!4.39e-08!18;UBERON:0000948!4.39e-08!18;UBERON:0005498!4.39e-08!18;UBERON:0004140!4.39e-08!18;UBERON:0009881!4.39e-08!18;UBERON:0004141!4.39e-08!18;UBERON:0003084!4.39e-08!18;UBERON:0007005!4.39e-08!18;UBERON:0004139!4.39e-08!18;UBERON:0004291!4.39e-08!18;UBERON:0004872!2.12e-07!33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.69e-11,51;UBERON:0004535,2.46e-09,23;UBERON:0001009,2.46e-09,23;UBERON:0007100,4.38e-08,18;UBERON:0000948,4.38e-08,18;UBERON:0005498,4.38e-08,18;UBERON:0004140,4.38e-08,18;UBERON:0009881,4.38e-08,18;UBERON:0004141,4.38e-08,18;UBERON:0003084,4.38e-08,18;UBERON:0007005,4.38e-08,18;UBERON:0004139,4.38e-08,18;UBERON:0004291,4.38e-08,18;UBERON:0004872,2.11e-07,33;UBERON:0010314,5.23e-07,92 | |||
|phase1_expression=4.16387002472464,33.850614541018,36.3999391511629,54.4435580352294,50.5904687245811,14.7733759282463,14.0167584357315,4.00282302668886,14.0788722151667,12.6394844213876,11.3003859028833,6.38177271962691,4.96482116800497,2.53519167015092,7.32841475994458,8.70643649776252,2.79824751251259,21.4514272443602,22.0754238105239,16.5511964201232,11.5658874605455,5.46100231604869,8.8807928307238,7.99962113967033,14.2233754261645,34.4539178469012,29.2918157388171,17.0222273821852,36.4844965356238,37.0484290747098,21.2861290229093,0,0,0,7.79899373328441,7.97926297720763,9.80012910059372,2.51118978442145,10.9386948233332,7.85285615960697,1.76469446409304,0,0.971020706062307,19.3881099682389,16.7271936512199,11.9305388905093,6.25913075478431,5.66865406589161,13.6205433295373,28.7756250629939,7.13930750289349,1.43752564364972,21.1406083632748,5.80289713609076,5.04140698713696,14.9210472900849,13.7536051170603,22.17389996793,4.04632921719196,3.1739458756322,3.1691570175309,6.43804610931351,1.77858959222228,3.5995988691256,0.988866362566974,2.8419204597844,2.09720077362883,3.07374644257244,0.518448061542388,0.405017814995072,0.630974884054146,14.2825492201902,15.2399293256613,1.71487118900936,1.15014565221884,4.5960939330501,23.1243350098716,33.5817699164044,37.6336006477797,2.76961204233407,2.65314166446988,6.25096044668112,25.1264699101243,32.0774687718058,23.9893249009592,23.8649154233671,22.3523538854592,9.87917062874093,30.6691082999395,24.1828992341714,24.9283460283443,5.16254326188832,2.719885334831,1.61910957491345,2.59910566979068,4.48026887097336,7.5839986871146,11.930122580464,8.3131521472918,9.54016851177919,8.16891834704747,19.2489716121477,17.8363667794652,21.3320010945999,8.87613268145978,10.6411143499541,11.1215377903252,9.24889425724386,33.6619248741323,28.0555642832519,4.16364784238726,10.3518262626128,12.9144678463393,10.399862198131,21.6363221129697,21.7403203000339,24.9666917411718,21.9791022518266,10.6153266233985,16.0149181447935,11.2629174414801,12.1218813283806,16.775258509631,78.1724728020831,76.2386012800976,44.1940705510863,1.1981512450592,2.99951365496704,2.1601938602421,45.3865637396613,10.980014467647,3.8952849154988,17.3824320192276,11.7629110371952,35.1161795305657,28.0677385107221,6.61955865027056,10.8234064430781,16.1742565397552,52.400022115732,2.73252930221678,4.36813998423599,3.78130472591233,7.53524089178575,13.8794458268709,15.8861013153214,14.3363638576385,73.7304606606195,0.431135985865684,1.51284864134255,2.11141348996739,2.84954452155847,2.78047249225598,8.70630416305416,5.76189981942242,0.796137067273973,1.40442637462647,0.772043721344145,0.568326998791185,17.3985648929822,18.0585066185444,15.8454614085693,20.1233025247429,19.2828947112456,19.9004575624718,23.950996309292,22.534965717568,34.9128373677837,30.6081320839074,45.4743875499094,45.6417397743168,45.0295961270024,45.2273237499564,32.0753340837289,7.78072809687271,4.11618449517138,62.4491499839378,21.6849464664106,1.2797295032114,3.48355007790658,3.73715637834071,8.67239155880373,8.89512175379481,13.3157938278791,28.4717436926707,14.822905925161,11.5614196048124,11.7384318504279,14.4273424468149,26.0657628509724,27.4495323340862,37.6377006450754,1.51734320762465,1.94222471436539,2.25415471346161,2.8511185898344,4.07300223052014,9.67874314486396,6.45012678667424,9.29943932271494,8.47793130343424,12.4631135561019,9.19003143970162,0.667380422864376,1.57247196090562,1.57403478669398,1.42002084971952,0.72353147925725,1.01850340712568,3.16465751195892,3.40483976227574,1.92192989231657,7.18841032636773,4.46569137202204,2.80833905803104,4.79899868099512,3.76734568396016,5.78932225636041,17.3667998756608,2.08440552947533,4.4000543639347,4.07388205860452,3.75504397261603,7.70528784232352,6.18913466303636,16.3912264200551,11.8226358079643,11.0732344824387,11.3212885746816,17.533374674584,19.1680329871144,18.0811323226889,10.5553898757491,7.61467957346193,9.34352118736169,6.62248191131358,39.4954451369968,34.2258124849233,7.21313759657372,21.2075578851673,5.04813151066011,5.0757036758563,10.3403230911743,5.4962823529087,9.13474563737816,7.07691326972081,9.71545684019746,7.59865230569411,9.09161889277004,12.2102100240287,11.2132667314532,2.67098405500883,4.56083486190013,16.0021019283359,5.30980553359851,0.485561272309963,0.604647113929502,0.754420319023592,2.65771703592696,3.68922177532713,4.9101375701962,6.5436071305951,2.13898427030833,5.37262488490887,5.27093042874994,7.21948802737308,27.9160476718106,3.24109969256358,1.16422815404479,2.7863814554107,3.3694644392032,3.0322698992352,4.60737257685939,8.52501857520878,26.5179030111993,19.2767184486076,14.7754026696824,17.3130565588554,11.6254387221052,7.84068024066026,5.84924485615369,5.25250879184196,28.2736411530955,37.455911006123,12.1318325366475,3.09580301944834,5.55583582109135,3.76736914009382,6.28793447516716,9.60868327467395,5.26933132980952,3.77868921273877,4.14599921413271,31.5041303944987,0.316335993581135,3.86306987541013,7.45236851670429,9.82714991268003,8.29777742235475,15.2396711414847,15.1255823977365,25.3903263724509,31.6260534831975,49.0858057338671,0.56369293868419,1.79419855252775,2.15096037594227,3.50012139019286,4.39143399824286,5.57555214119568,7.3935060346825,4.9477666240701,3.35549902162275,1.44950472495604,2.59227005632079,3.16011120628178,1.01362607645082,2.2596410576262,2.33857481360031,3.75956060901711,3.77494574084403,2.64429988943931,2.80610101631697,2.52416124870369,2.28620419965,2.92395936896837,2.14407337627455,2.30908419936791,3.15567635890236,15.1909357022192,2.44184548711471,0.358855426437903,1.34307693091263,36.7060228661162,22.8972620050442,7.14291334642334,5.57357785605571,23.0723167856267,9.60078132449013,11.0478056761722,11.4579102687879,11.3423100346834,10.2762377965596,16.6186657425734,9.45031500324528,21.1650965515384,21.7508356312418,20.192652158321,0.93408612825759,2.79317411380722,3.07320490357441,6.80698807791223,2.93458427679175,4.04455718590031,8.88986911206461,10.5077879191836,10.2694147069381,11.3713745293709,7.85785829659743,12.449338531481,9.36415074698824,7.74704344098918,8.61532034334199,9.0495801343784,9.50251472747815,8.48800570040302,9.06588981767275,10.1567254892734,9.60033906679163,12.4233064311536,11.4449371174714,11.1916740806893,10.4461412261017,10.4075967706762,8.96347067076586,5.26139422875686,11.2717414492065,12.906272248128,9.37216643180976,8.17587203717177,7.7753898202241,10.6906420418317,7.52335782826451,5.9954538705107,11.6965804222704,19.7681369724434,18.9375448748155,12.7943023089319,14.839541479707 | |||
|short_description=p3@Camk2d | |||
}} |
Revision as of 01:26, 14 September 2013
Short description: | p3@Camk2d |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Camk2d_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000106400, ENSMUST00000106401, ENSMUST00000129293, ENSMUST00000131156_5end |
EntrezGene: | Camk2d |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.69e-11 | 51 |
cardiovascular system | 2.46e-09 | 23 |
circulatory system | 2.46e-09 | 23 |
primary circulatory organ | 4.38e-08 | 18 |
heart | 4.38e-08 | 18 |
primitive heart tube | 4.38e-08 | 18 |
primary heart field | 4.38e-08 | 18 |
anterior lateral plate mesoderm | 4.38e-08 | 18 |
heart tube | 4.38e-08 | 18 |
heart primordium | 4.38e-08 | 18 |
cardiac mesoderm | 4.38e-08 | 18 |
cardiogenic plate | 4.38e-08 | 18 |
heart rudiment | 4.38e-08 | 18 |
splanchnic layer of lateral plate mesoderm | 2.11e-07 | 33 |
structure with developmental contribution from neural crest | 5.23e-07 | 92 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.