FFCP PHASE1:Mm9::chr14:102240058..102240074,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=380928|HGNC=|MCL_coexpression_id=12|UniProt=|association_with_transcript=22bp_to_ENSMUST00000159948_5end|description=CAGE_peak_5_at_Lmo7_5end|id=chr14:102240058..102240074,+|ontology_enrichment_celltype=CL:0002563!1.29e-08!9;CL:0002251!1.29e-08!9;CL:0000066!1.95e-07!25|ontology_enrichment_celltype_v019_2=CL:0002563,4.11e-16,9;CL:0002251,4.11e-16,9;CL:0000239,6.37e-12,6;CL:0000677,6.37e-12,6;CL:0000584,6.37e-12,6;CL:0000075,4.44e-10,7;CL:0002076,7.21e-09,15;CL:0000066,1.32e-08,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!8.49e-14!15;UBERON:0000160!1.01e-13!43;UBERON:0005409!4.96e-13!59;UBERON:0001242!3.96e-12!13;UBERON:0000060!3.96e-12!13;UBERON:0001262!3.96e-12!13;UBERON:0004786!3.96e-12!13;UBERON:0003350!1.29e-08!9;UBERON:0004808!1.29e-08!9;UBERON:0001277!1.29e-08!9;UBERON:0004923!6.08e-07!24;UBERON:0001007!6.12e-07!128;UBERON:0001555!6.12e-07!128;UBERON:0007026!6.12e-07!128|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.12e-46,31;UBERON:0005409,2.38e-34,47;UBERON:0000344,8.04e-27,15;UBERON:0001242,2.29e-23,13;UBERON:0001262,2.29e-23,13;UBERON:0004786,2.29e-23,13;UBERON:0003350,4.11e-16,9;UBERON:0004808,4.11e-16,9;UBERON:0001277,4.11e-16,9;UBERON:0004923,3.42e-15,24;UBERON:0000485,8.19e-13,11;UBERON:0001007,1.44e-11,116;UBERON:0001555,1.44e-11,116;UBERON:0007026,1.44e-11,116;UBERON:0004119,3.21e-11,118;UBERON:0000925,3.21e-11,118;UBERON:0006595,3.21e-11,118;UBERON:0004921,5.90e-10,114;UBERON:0002108,2.09e-08,4;UBERON:0000331,8.38e-07,3;UBERON:0002116,8.38e-07,3;UBERON:0001204,8.38e-07,3;UBERON:0001168,8.38e-07,3|phase1_expression=0,65.2584012285605,62.3348957963664,61.0977706839797,67.1200278128105,10.4085148585372,12.8486952327539,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,40.3180905439385,36.9348942518144,39.6220055239364,35.7532456812032,40.5085917449471,53.0165340283283,43.601212448468,29.4901579171555,0,0,0,12.9983228888074,8.47796691328311,11.4334839506927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0914876436024097,0,0,0,0,0,0,0,0,0,0,0,0.679971333707751,0,0.649776417447669,0.896053774194671,2.52799956237153,0,0,0,0,0,0,0,0.649473123033642,0.760079596425296,0.505524445014783,11.1900202124679,0,0,0,0,0,0.301445281105245,0,0,0.247194967734374,0,0,0.161766849947409,0,0,27.9587641827183,0,0,37.5521871156629,0,0,0,0,1.83000241127451,0,0.695297280769106,0.255715457330331,0,0.324482526135515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278047249225598,0.348252166522167,0.205782136407943,0,0,0,0,0,0,0,0,0.196764231747404,0.308534225774757,0.697601834251224,0.536546802799238,0.817357396570186,0.822799249567402,0.32833492815819,0.405344047729279,0.438599962275997,0.658650345873152,0.134206418760372,0.841159794256509,0.102904612379284,75.0050637373221,35.1719253662514,0,0,2.83508414908605,8.47070803418039,10.8965241483986,11.7939888189787,47.4529061544512,20.2579714310533,16.3367885720175,17.9060824837036,21.056121408865,41.3456927980942,41.2823675260666,41.8196673834171,0,0,0,0,0,0,0.379419222745544,0,0.470996183524124,0.616985819609003,0,0,0,0,0,0,0,0,0,0.274561413188081,0,0.744281895337007,0.312037673114561,0,0.358794827043824,0,0.369506380333209,0,0,0.169745085775188,0.234690248288502,1.17254380209271,0.952174563544055,0.585400943573396,0.157635144106191,0.221464689648775,0,0,0,0.289298117163023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.04499026088774,0,0,0,0,0,0,0,0,0,0.177340233642274,0,0,0,0,0,0.661585194164886,0.49465875882444,0.322928853391811,0.0603129249281559,0,0.328281799490123,35.2691812322119,0,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,1.29606408986162,0.627264888043406,0.87345025498471,0.404593039154462,0.909188012978695,1.57053565190418,39.7917968005804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198681354781265,0,0,0,0,0,0,0,0,0.453460767230423,0,0,0,0,0.187682475451182,0,0,0.501572104035363,0.564751842617067,0,0,0,0,0,0.675022500231806,0.900642406448441,0,0.51776031175182,0,0,0,0,0,0.551530525350042,1.33348036680969,0.618105171716683,0.962757628775446,0.505394423527595,0.25347929989024,1.32038438970253,0.936415074698824,0.89635213366817,0.861532034334199,0.476293691283074,1.27472758539341,1.15745532278223,0.824171801606613,0.883193520806384,1.02860775715625,0.354951612318675,0.953744759789284,0.872078499793971,1.2234219453993,0.423073039458382,1.09756783723664,0.263069711437843,1.7654534799962,0,0.237270036248348,0.591026894253381,0.818462086339379,1.08455788830176,0.578719832943424,0,0.701794825336225,1.50409737833809,0.191288332068843,0,0|short_description=p5@Lmo7}} | ||
|EntrezGene=380928 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|UniProt= | |||
|association_with_transcript=22bp_to_ENSMUST00000159948_5end | |||
|description=CAGE_peak_5_at_Lmo7_5end | |||
|id=chr14:102240058..102240074,+ | |||
|ontology_enrichment_celltype=CL:0002563!1.29e-08!9;CL:0002251!1.29e-08!9;CL:0000066!1.95e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,4.11e-16,9;CL:0002251,4.11e-16,9;CL:0000239,6.37e-12,6;CL:0000677,6.37e-12,6;CL:0000584,6.37e-12,6;CL:0000075,4.44e-10,7;CL:0002076,7.21e-09,15;CL:0000066,1.32e-08,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!8.49e-14!15;UBERON:0000160!1.01e-13!43;UBERON:0005409!4.96e-13!59;UBERON:0001242!3.96e-12!13;UBERON:0000060!3.96e-12!13;UBERON:0001262!3.96e-12!13;UBERON:0004786!3.96e-12!13;UBERON:0003350!1.29e-08!9;UBERON:0004808!1.29e-08!9;UBERON:0001277!1.29e-08!9;UBERON:0004923!6.08e-07!24;UBERON:0001007!6.12e-07!128;UBERON:0001555!6.12e-07!128;UBERON:0007026!6.12e-07!128 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.12e-46,31;UBERON:0005409,2.38e-34,47;UBERON:0000344,8.04e-27,15;UBERON:0001242,2.29e-23,13;UBERON:0001262,2.29e-23,13;UBERON:0004786,2.29e-23,13;UBERON:0003350,4.11e-16,9;UBERON:0004808,4.11e-16,9;UBERON:0001277,4.11e-16,9;UBERON:0004923,3.42e-15,24;UBERON:0000485,8.19e-13,11;UBERON:0001007,1.44e-11,116;UBERON:0001555,1.44e-11,116;UBERON:0007026,1.44e-11,116;UBERON:0004119,3.21e-11,118;UBERON:0000925,3.21e-11,118;UBERON:0006595,3.21e-11,118;UBERON:0004921,5.90e-10,114;UBERON:0002108,2.09e-08,4;UBERON:0000331,8.38e-07,3;UBERON:0002116,8.38e-07,3;UBERON:0001204,8.38e-07,3;UBERON:0001168,8.38e-07,3 | |||
|phase1_expression=0,65.2584012285605,62.3348957963664,61.0977706839797,67.1200278128105,10.4085148585372,12.8486952327539,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,40.3180905439385,36.9348942518144,39.6220055239364,35.7532456812032,40.5085917449471,53.0165340283283,43.601212448468,29.4901579171555,0,0,0,12.9983228888074,8.47796691328311,11.4334839506927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0914876436024097,0,0,0,0,0,0,0,0,0,0,0,0.679971333707751,0,0.649776417447669,0.896053774194671,2.52799956237153,0,0,0,0,0,0,0,0.649473123033642,0.760079596425296,0.505524445014783,11.1900202124679,0,0,0,0,0,0.301445281105245,0,0,0.247194967734374,0,0,0.161766849947409,0,0,27.9587641827183,0,0,37.5521871156629,0,0,0,0,1.83000241127451,0,0.695297280769106,0.255715457330331,0,0.324482526135515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278047249225598,0.348252166522167,0.205782136407943,0,0,0,0,0,0,0,0,0.196764231747404,0.308534225774757,0.697601834251224,0.536546802799238,0.817357396570186,0.822799249567402,0.32833492815819,0.405344047729279,0.438599962275997,0.658650345873152,0.134206418760372,0.841159794256509,0.102904612379284,75.0050637373221,35.1719253662514,0,0,2.83508414908605,8.47070803418039,10.8965241483986,11.7939888189787,47.4529061544512,20.2579714310533,16.3367885720175,17.9060824837036,21.056121408865,41.3456927980942,41.2823675260666,41.8196673834171,0,0,0,0,0,0,0.379419222745544,0,0.470996183524124,0.616985819609003,0,0,0,0,0,0,0,0,0,0.274561413188081,0,0.744281895337007,0.312037673114561,0,0.358794827043824,0,0.369506380333209,0,0,0.169745085775188,0.234690248288502,1.17254380209271,0.952174563544055,0.585400943573396,0.157635144106191,0.221464689648775,0,0,0,0.289298117163023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.04499026088774,0,0,0,0,0,0,0,0,0,0.177340233642274,0,0,0,0,0,0.661585194164886,0.49465875882444,0.322928853391811,0.0603129249281559,0,0.328281799490123,35.2691812322119,0,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,1.29606408986162,0.627264888043406,0.87345025498471,0.404593039154462,0.909188012978695,1.57053565190418,39.7917968005804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198681354781265,0,0,0,0,0,0,0,0,0.453460767230423,0,0,0,0,0.187682475451182,0,0,0.501572104035363,0.564751842617067,0,0,0,0,0,0.675022500231806,0.900642406448441,0,0.51776031175182,0,0,0,0,0,0.551530525350042,1.33348036680969,0.618105171716683,0.962757628775446,0.505394423527595,0.25347929989024,1.32038438970253,0.936415074698824,0.89635213366817,0.861532034334199,0.476293691283074,1.27472758539341,1.15745532278223,0.824171801606613,0.883193520806384,1.02860775715625,0.354951612318675,0.953744759789284,0.872078499793971,1.2234219453993,0.423073039458382,1.09756783723664,0.263069711437843,1.7654534799962,0,0.237270036248348,0.591026894253381,0.818462086339379,1.08455788830176,0.578719832943424,0,0.701794825336225,1.50409737833809,0.191288332068843,0,0 | |||
|short_description=p5@Lmo7 | |||
}} |
Revision as of 01:25, 13 September 2013
Short description: | p5@Lmo7 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Lmo7_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | 22bp_to_ENSMUST00000159948_5end |
EntrezGene: | Lmo7 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 4.11e-16 | 9 |
epithelial cell of alimentary canal | 4.11e-16 | 9 |
brush border epithelial cell | 6.37e-12 | 6 |
gut absorptive cell | 6.37e-12 | 6 |
enterocyte | 6.37e-12 | 6 |
columnar/cuboidal epithelial cell | 4.44e-10 | 7 |
endo-epithelial cell | 7.21e-09 | 15 |
epithelial cell | 1.32e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
intestine | 3.12e-46 | 31 |
gastrointestinal system | 2.38e-34 | 47 |
mucosa | 8.04e-27 | 15 |
intestinal mucosa | 2.29e-23 | 13 |
wall of intestine | 2.29e-23 | 13 |
gastrointestinal system mucosa | 2.29e-23 | 13 |
epithelium of mucosa | 4.11e-16 | 9 |
gastrointestinal system epithelium | 4.11e-16 | 9 |
intestinal epithelium | 4.11e-16 | 9 |
organ component layer | 3.42e-15 | 24 |
simple columnar epithelium | 8.19e-13 | 11 |
digestive system | 1.44e-11 | 116 |
digestive tract | 1.44e-11 | 116 |
primitive gut | 1.44e-11 | 116 |
endoderm-derived structure | 3.21e-11 | 118 |
endoderm | 3.21e-11 | 118 |
presumptive endoderm | 3.21e-11 | 118 |
subdivision of digestive tract | 5.90e-10 | 114 |
small intestine | 2.09e-08 | 4 |
ileal mucosa | 8.38e-07 | 3 |
ileum | 8.38e-07 | 3 |
mucosa of small intestine | 8.38e-07 | 3 |
wall of small intestine | 8.38e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.