FFCP PHASE1:Mm9::chr7:147280926..147280940,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=1198|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr7:147280926..147280940,+|id=chr7:147280926..147280940,+|ontology_enrichment_celltype=CL:0002563!3.77e-14!9;CL:0002251!3.77e-14!9;CL:0000239!7.63e-12!6;CL:0000677!7.63e-12!6;CL:0000212!7.63e-12!6;CL:0000584!7.63e-12!6;CL:0000075!4.29e-10!7;CL:0000066!5.69e-09!25;CL:0000473!1.80e-08!3;CL:0000627!1.80e-08!3;CL:0000682!1.80e-08!3;CL:0002076!4.56e-08!15|ontology_enrichment_celltype_v019_2=CL:0000239,1.89e-17,6;CL:0000677,1.89e-17,6;CL:0000584,1.89e-17,6;CL:0000075,5.31e-15,7;CL:0002563,9.97e-12,9;CL:0002251,9.97e-12,9;CL:0002076,4.08e-07,15|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!7.76e-29!15;UBERON:0000160!3.32e-25!43;UBERON:0001242!1.32e-23!13;UBERON:0000060!1.32e-23!13;UBERON:0001262!1.32e-23!13;UBERON:0004786!1.32e-23!13;UBERON:0005409!5.22e-17!59;UBERON:0004923!6.54e-17!24;UBERON:0003350!3.77e-14!9;UBERON:0004808!3.77e-14!9;UBERON:0001277!3.77e-14!9;UBERON:0000485!2.19e-11!11;UBERON:0000331!1.19e-08!3;UBERON:0002116!1.19e-08!3;UBERON:0001204!1.19e-08!3;UBERON:0001168!1.19e-08!3;UBERON:0001007!1.21e-07!128;UBERON:0001555!1.21e-07!128;UBERON:0007026!1.21e-07!128;UBERON:0004119!1.92e-07!130;UBERON:0000925!1.92e-07!130;UBERON:0006595!1.92e-07!130;UBERON:0001962!6.71e-07!2;UBERON:0001961!6.71e-07!2;UBERON:0001744!6.71e-07!2|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.62e-33,15;UBERON:0001242,2.05e-23,13;UBERON:0001262,2.05e-23,13;UBERON:0004786,2.05e-23,13;UBERON:0004923,1.20e-20,24;UBERON:0000160,3.26e-19,31;UBERON:0001962,5.25e-14,2;UBERON:0001961,5.25e-14,2;UBERON:0001744,5.25e-14,2;UBERON:0005409,2.59e-12,47;UBERON:0003350,9.97e-12,9;UBERON:0004808,9.97e-12,9;UBERON:0001277,9.97e-12,9;UBERON:0002465,1.21e-09,3;UBERON:0000485,1.23e-09,11;UBERON:0000331,4.66e-09,3;UBERON:0002116,4.66e-09,3;UBERON:0001204,4.66e-09,3;UBERON:0001168,4.66e-09,3;UBERON:0006834,4.65e-08,1;UBERON:0003199,1.14e-07,1;UBERON:0002108,5.23e-07,4|phase1_expression=0,2.44282785347553,3.63999391511629,1.81478526784098,3.50627010962443,0,0.700837921786577,0,0,0.234064526321993,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,5.11975752938901,2.2940928106717,0.57423196411502,0.86152399231815,1.07735616342945,1.52018735565099,1.26015064879965,0.443461021310609,0,0,0,0.577703239502549,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45673551887624,0,0,0,0,0,0,0,0.125666591329675,0,0,0.884610551949874,0,0,0,0,0,0,1.53274233125155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.29544417878937,0,0,0,0,0,0.22237804384487,0.190225626112559,1.42358718463353,0.988193728344065,0.251335208800269,0.198956472041151,0.38992817423824,0.898819408654221,0.648414149624083,1.39398891278057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.387043379778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135804113845862,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr7:147280926..147280940,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=1198 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr7:147280926..147280940,+ | |||
|id=chr7:147280926..147280940,+ | |||
|ontology_enrichment_celltype=CL:0002563!3.77e-14!9;CL:0002251!3.77e-14!9;CL:0000239!7.63e-12!6;CL:0000677!7.63e-12!6;CL:0000212!7.63e-12!6;CL:0000584!7.63e-12!6;CL:0000075!4.29e-10!7;CL:0000066!5.69e-09!25;CL:0000473!1.80e-08!3;CL:0000627!1.80e-08!3;CL:0000682!1.80e-08!3;CL:0002076!4.56e-08!15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,1.89e-17,6;CL:0000677,1.89e-17,6;CL:0000584,1.89e-17,6;CL:0000075,5.31e-15,7;CL:0002563,9.97e-12,9;CL:0002251,9.97e-12,9;CL:0002076,4.08e-07,15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!7.76e-29!15;UBERON:0000160!3.32e-25!43;UBERON:0001242!1.32e-23!13;UBERON:0000060!1.32e-23!13;UBERON:0001262!1.32e-23!13;UBERON:0004786!1.32e-23!13;UBERON:0005409!5.22e-17!59;UBERON:0004923!6.54e-17!24;UBERON:0003350!3.77e-14!9;UBERON:0004808!3.77e-14!9;UBERON:0001277!3.77e-14!9;UBERON:0000485!2.19e-11!11;UBERON:0000331!1.19e-08!3;UBERON:0002116!1.19e-08!3;UBERON:0001204!1.19e-08!3;UBERON:0001168!1.19e-08!3;UBERON:0001007!1.21e-07!128;UBERON:0001555!1.21e-07!128;UBERON:0007026!1.21e-07!128;UBERON:0004119!1.92e-07!130;UBERON:0000925!1.92e-07!130;UBERON:0006595!1.92e-07!130;UBERON:0001962!6.71e-07!2;UBERON:0001961!6.71e-07!2;UBERON:0001744!6.71e-07!2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.62e-33,15;UBERON:0001242,2.05e-23,13;UBERON:0001262,2.05e-23,13;UBERON:0004786,2.05e-23,13;UBERON:0004923,1.20e-20,24;UBERON:0000160,3.26e-19,31;UBERON:0001962,5.25e-14,2;UBERON:0001961,5.25e-14,2;UBERON:0001744,5.25e-14,2;UBERON:0005409,2.59e-12,47;UBERON:0003350,9.97e-12,9;UBERON:0004808,9.97e-12,9;UBERON:0001277,9.97e-12,9;UBERON:0002465,1.21e-09,3;UBERON:0000485,1.23e-09,11;UBERON:0000331,4.66e-09,3;UBERON:0002116,4.66e-09,3;UBERON:0001204,4.66e-09,3;UBERON:0001168,4.66e-09,3;UBERON:0006834,4.65e-08,1;UBERON:0003199,1.14e-07,1;UBERON:0002108,5.23e-07,4 | |||
|phase1_expression=0,2.44282785347553,3.63999391511629,1.81478526784098,3.50627010962443,0,0.700837921786577,0,0,0.234064526321993,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,5.11975752938901,2.2940928106717,0.57423196411502,0.86152399231815,1.07735616342945,1.52018735565099,1.26015064879965,0.443461021310609,0,0,0,0.577703239502549,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45673551887624,0,0,0,0,0,0,0,0.125666591329675,0,0,0.884610551949874,0,0,0,0,0,0,1.53274233125155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.29544417878937,0,0,0,0,0,0.22237804384487,0.190225626112559,1.42358718463353,0.988193728344065,0.251335208800269,0.198956472041151,0.38992817423824,0.898819408654221,0.648414149624083,1.39398891278057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.387043379778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135804113845862,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr7:147280926..147280940,+ | |||
}} |
Revision as of 12:13, 14 September 2013
Short description: | p@chr7:147280926..147280940, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr7:147280926..147280940, + |
Coexpression cluster: | MCL_coexpression_mm9:1198 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 1.89e-17 | 6 |
gut absorptive cell | 1.89e-17 | 6 |
enterocyte | 1.89e-17 | 6 |
columnar/cuboidal epithelial cell | 5.31e-15 | 7 |
intestinal epithelial cell | 9.97e-12 | 9 |
epithelial cell of alimentary canal | 9.97e-12 | 9 |
endo-epithelial cell | 4.08e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
mucosa | 1.62e-33 | 15 |
intestinal mucosa | 2.05e-23 | 13 |
wall of intestine | 2.05e-23 | 13 |
gastrointestinal system mucosa | 2.05e-23 | 13 |
organ component layer | 1.20e-20 | 24 |
intestine | 3.26e-19 | 31 |
gut-associated lymphoid tissue | 5.25e-14 | 2 |
mucosa-associated lymphoid tissue | 5.25e-14 | 2 |
lymphoid tissue | 5.25e-14 | 2 |
gastrointestinal system | 2.59e-12 | 47 |
epithelium of mucosa | 9.97e-12 | 9 |
gastrointestinal system epithelium | 9.97e-12 | 9 |
intestinal epithelium | 9.97e-12 | 9 |
lymphoid system | 1.21e-09 | 3 |
simple columnar epithelium | 1.23e-09 | 11 |
ileal mucosa | 4.66e-09 | 3 |
ileum | 4.66e-09 | 3 |
mucosa of small intestine | 4.66e-09 | 3 |
wall of small intestine | 4.66e-09 | 3 |
uterus or analog | 4.65e-08 | 1 |
egg chamber | 1.14e-07 | 1 |
small intestine | 5.23e-07 | 4 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.