FFCP PHASE1:Mm9::chr9:45763049..45763070,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=214597|HGNC=|MCL_coexpression_id=24|UniProt=Q8CIF6|association_with_transcript=0bp_to_ENSMUST00000114573_5end|description=CAGE_peak_6_at_Sidt2_5end|id=chr9:45763049..45763070,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000066,1.44e-08,25;CL:0000239,8.50e-08,6;CL:0000677,8.50e-08,6;CL:0000584,8.50e-08,6;CL:0002563,1.27e-07,9;CL:0002251,1.27e-07,9;CL:0000223,4.09e-07,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!6.41e-10!43;UBERON:0000344!2.05e-08!15;UBERON:0001242!2.61e-07!13;UBERON:0000060!2.61e-07!13;UBERON:0001262!2.61e-07!13;UBERON:0004786!2.61e-07!13;UBERON:0005409!8.55e-07!59|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.32e-20,31;UBERON:0000344,3.70e-13,15;UBERON:0005409,4.30e-13,47;UBERON:0001242,2.82e-11,13;UBERON:0001262,2.82e-11,13;UBERON:0004786,2.82e-11,13;UBERON:0001007,5.96e-11,116;UBERON:0001555,5.96e-11,116;UBERON:0007026,5.96e-11,116;UBERON:0004119,1.64e-10,118;UBERON:0000925,1.64e-10,118;UBERON:0006595,1.64e-10,118;UBERON:0004921,8.37e-10,114;UBERON:0004923,1.85e-08,24;UBERON:0003350,1.27e-07,9;UBERON:0004808,1.27e-07,9;UBERON:0001277,1.27e-07,9;UBERON:0002107,6.99e-07,22;UBERON:0007499,6.99e-07,22;UBERON:0006925,6.99e-07,22;UBERON:0009497,6.99e-07,22;UBERON:0000015,6.99e-07,22;UBERON:0002423,6.99e-07,22;UBERON:0006235,6.99e-07,22;UBERON:0008835,6.99e-07,22;UBERON:0003894,6.99e-07,22;UBERON:0004161,6.99e-07,22;UBERON:0008836,6.99e-07,22|phase1_expression=0.480446541314382,42.574999732002,45.0449246995641,30.8513495532967,36.064492556137,4.8684988854448,3.50418960893289,0.774739940649458,0.985521055061667,1.17032263160997,0,0.0797721589953364,1.02720437958723,0.34968160967599,0.333109761815663,0.202475267389826,0,0.157731082679119,0.411343300817216,0,1.19060606211498,0.0992909512008853,0.261199789138935,8.47959840805055,9.86459908588831,28.137366241636,17.6612418425221,12.0663890304098,4.56056206695297,8.06496415231778,4.43461021310609,0,0,0,0.288851619751275,1.49611180822643,1.83752420636132,0,0,0.523523743973798,0,0,0,0.881277725829041,1.01376931219515,1.28482726513177,2.34717403304412,0.218025156380447,0.659058548203415,0.58328969722285,0.419959264876088,0,0,0.725362142011344,1.34437519656986,0.514518872071894,0.573066879877513,0.515672092277442,0,0,0,1.35537812827653,2.66788438833342,0.449949858640699,2.96659908770092,0,1.19840044207362,1.92109152660777,0.103689612308478,0,0,1.14260393761521,0.441737081903227,0.122490799214954,0,0,0,0.255374676170375,0.46081959976873,0.131886287730194,0.0914876436024097,0,0.279182999001381,0.56276261003168,0.30559649555362,0.294628585473668,0.711858403995515,0.186399445825301,0,0.0755715601067855,1.15945795480671,7.74381489283248,4.75979933595425,8.63525106620507,25.3412802804591,19.7131830322828,3.08977724289854,0.511290967734173,0.259786004602869,0.35333957451034,0.563373679106722,0,0,0,0,0.253359865475099,0,5.1382745873577,0.517875767294343,1.7813056687779,0.173485326766136,0.913396434936424,1.15307748628029,0.904335843315735,1.05829836422134,1.63366568728578,1.97755974187499,1.15679485535929,0,0,0.441683036920787,0,0,0.292780797011547,1.25668024088073,16.0937944781413,0,0,0,0.449371918214468,0,0,0.347648640384553,0,0.62336413367868,1.29793010454206,0.407357455401265,0.746441823660558,0.758168275301024,0.841767423545896,0.130120442962704,0.229902104433473,0.360124259610698,0.150704817835715,0.136072998302656,0.384341160854549,0.187403449119458,0.258703370739016,0,0,0.175951124163949,0,0,1.74126083261083,0.411564272815887,0.199034266818493,0,0,0.568326998791185,0.207125772535502,0.469052119962192,0.36012412292203,0.473489471170421,0.393528463494808,0,0.232533944750408,0,0.233530684734339,0.329119699826961,0.492502392237286,0.810688095458557,0.584799949701329,0.439100230582101,0.536825675041487,0.210289948564127,0.205809224758569,44.6065357028127,23.2716498663919,0,0,0,1.21010114774006,2.66853652613844,5.51654315726422,10.9141684155238,13.9994111515409,9.80207314321051,7.95825888164603,11.6978452271472,14.3811105384675,10.3746263939853,11.3510525754989,0,0,0,0.203651327845314,0.387904974335251,0.841629838683823,1.70738650235495,2.50937251565324,2.82597710114475,2.46794327843601,12.4510103376603,0.166845105716094,0.393117990226406,0.224862112384854,0,0.482354319504834,0.50925170356284,0.287696137450811,2.7562988551756,1.37280706594041,0,2.23284568601102,4.05648975048929,6.06189307073068,10.0462551572271,15.4381926836277,0.184753190166605,0,0,0.169745085775188,0,0,0.476087281772027,0.585400943573396,0,0.44292937929755,0.318909537314974,0.327726629431476,0.690739927463582,0.867894351489069,0,1.08781136763742,0.983528546038072,0.551873492609465,0,0.703270119553219,0.327869890753351,2.01976741763498,0.315508219416257,0.390438744296638,0,0.238968797952552,0,0,0.809621403349789,1.16902343164525,0.395287777946524,0.642642632843614,0.567760340833074,0.178065603667255,0.325773918707152,1.15479086080775,1.32745138339963,0,0,0.754420319023592,0.590603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| ||
|EntrezGene=214597 | |||
|HGNC= | |||
|MCL_coexpression_id=24 | |||
|UniProt=Q8CIF6 | |||
|association_with_transcript=0bp_to_ENSMUST00000114573_5end | |||
|description=CAGE_peak_6_at_Sidt2_5end | |||
|id=chr9:45763049..45763070,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.44e-08,25;CL:0000239,8.50e-08,6;CL:0000677,8.50e-08,6;CL:0000584,8.50e-08,6;CL:0002563,1.27e-07,9;CL:0002251,1.27e-07,9;CL:0000223,4.09e-07,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!6.41e-10!43;UBERON:0000344!2.05e-08!15;UBERON:0001242!2.61e-07!13;UBERON:0000060!2.61e-07!13;UBERON:0001262!2.61e-07!13;UBERON:0004786!2.61e-07!13;UBERON:0005409!8.55e-07!59 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.32e-20,31;UBERON:0000344,3.70e-13,15;UBERON:0005409,4.30e-13,47;UBERON:0001242,2.82e-11,13;UBERON:0001262,2.82e-11,13;UBERON:0004786,2.82e-11,13;UBERON:0001007,5.96e-11,116;UBERON:0001555,5.96e-11,116;UBERON:0007026,5.96e-11,116;UBERON:0004119,1.64e-10,118;UBERON:0000925,1.64e-10,118;UBERON:0006595,1.64e-10,118;UBERON:0004921,8.37e-10,114;UBERON:0004923,1.85e-08,24;UBERON:0003350,1.27e-07,9;UBERON:0004808,1.27e-07,9;UBERON:0001277,1.27e-07,9;UBERON:0002107,6.99e-07,22;UBERON:0007499,6.99e-07,22;UBERON:0006925,6.99e-07,22;UBERON:0009497,6.99e-07,22;UBERON:0000015,6.99e-07,22;UBERON:0002423,6.99e-07,22;UBERON:0006235,6.99e-07,22;UBERON:0008835,6.99e-07,22;UBERON:0003894,6.99e-07,22;UBERON:0004161,6.99e-07,22;UBERON:0008836,6.99e-07,22 | |||
|phase1_expression=0.480446541314382,42.574999732002,45.0449246995641,30.8513495532967,36.064492556137,4.8684988854448,3.50418960893289,0.774739940649458,0.985521055061667,1.17032263160997,0,0.0797721589953364,1.02720437958723,0.34968160967599,0.333109761815663,0.202475267389826,0,0.157731082679119,0.411343300817216,0,1.19060606211498,0.0992909512008853,0.261199789138935,8.47959840805055,9.86459908588831,28.137366241636,17.6612418425221,12.0663890304098,4.56056206695297,8.06496415231778,4.43461021310609,0,0,0,0.288851619751275,1.49611180822643,1.83752420636132,0,0,0.523523743973798,0,0,0,0.881277725829041,1.01376931219515,1.28482726513177,2.34717403304412,0.218025156380447,0.659058548203415,0.58328969722285,0.419959264876088,0,0,0.725362142011344,1.34437519656986,0.514518872071894,0.573066879877513,0.515672092277442,0,0,0,1.35537812827653,2.66788438833342,0.449949858640699,2.96659908770092,0,1.19840044207362,1.92109152660777,0.103689612308478,0,0,1.14260393761521,0.441737081903227,0.122490799214954,0,0,0,0.255374676170375,0.46081959976873,0.131886287730194,0.0914876436024097,0,0.279182999001381,0.56276261003168,0.30559649555362,0.294628585473668,0.711858403995515,0.186399445825301,0,0.0755715601067855,1.15945795480671,7.74381489283248,4.75979933595425,8.63525106620507,25.3412802804591,19.7131830322828,3.08977724289854,0.511290967734173,0.259786004602869,0.35333957451034,0.563373679106722,0,0,0,0,0.253359865475099,0,5.1382745873577,0.517875767294343,1.7813056687779,0.173485326766136,0.913396434936424,1.15307748628029,0.904335843315735,1.05829836422134,1.63366568728578,1.97755974187499,1.15679485535929,0,0,0.441683036920787,0,0,0.292780797011547,1.25668024088073,16.0937944781413,0,0,0,0.449371918214468,0,0,0.347648640384553,0,0.62336413367868,1.29793010454206,0.407357455401265,0.746441823660558,0.758168275301024,0.841767423545896,0.130120442962704,0.229902104433473,0.360124259610698,0.150704817835715,0.136072998302656,0.384341160854549,0.187403449119458,0.258703370739016,0,0,0.175951124163949,0,0,1.74126083261083,0.411564272815887,0.199034266818493,0,0,0.568326998791185,0.207125772535502,0.469052119962192,0.36012412292203,0.473489471170421,0.393528463494808,0,0.232533944750408,0,0.233530684734339,0.329119699826961,0.492502392237286,0.810688095458557,0.584799949701329,0.439100230582101,0.536825675041487,0.210289948564127,0.205809224758569,44.6065357028127,23.2716498663919,0,0,0,1.21010114774006,2.66853652613844,5.51654315726422,10.9141684155238,13.9994111515409,9.80207314321051,7.95825888164603,11.6978452271472,14.3811105384675,10.3746263939853,11.3510525754989,0,0,0,0.203651327845314,0.387904974335251,0.841629838683823,1.70738650235495,2.50937251565324,2.82597710114475,2.46794327843601,12.4510103376603,0.166845105716094,0.393117990226406,0.224862112384854,0,0.482354319504834,0.50925170356284,0.287696137450811,2.7562988551756,1.37280706594041,0,2.23284568601102,4.05648975048929,6.06189307073068,10.0462551572271,15.4381926836277,0.184753190166605,0,0,0.169745085775188,0,0,0.476087281772027,0.585400943573396,0,0.44292937929755,0.318909537314974,0.327726629431476,0.690739927463582,0.867894351489069,0,1.08781136763742,0.983528546038072,0.551873492609465,0,0.703270119553219,0.327869890753351,2.01976741763498,0.315508219416257,0.390438744296638,0,0.238968797952552,0,0,0.809621403349789,1.16902343164525,0.395287777946524,0.642642632843614,0.567760340833074,0.178065603667255,0.325773918707152,1.15479086080775,1.32745138339963,0,0,0.754420319023592,0.590603785761546,0,4.65170927702798,0.727067458955011,0.356497378384721,3.16036757935816,1.05418608574999,5.15677716240934,1.36175842301515,0,0.129358683782755,0.428674070063185,0.177340233642274,0.535106452806212,0.493647061806363,0.608929898229199,0.469343416127421,0.21183207086382,1.7642271844397,0.49465875882444,0.645857706783622,0.361877549568935,0.119372344003136,0.656563598980245,15.7399651780119,0.927126510052548,0.170870880797853,1.03193433981611,0.185194527369712,0.188368457004691,0.27338845544205,0.228778173206523,0.169978429993855,0.279902904647316,0.138199973804424,0,0.158167996790568,0,0.216010681643603,0.209088296014469,0.436725127492355,0.404593039154462,1.40510874733071,1.83229159388821,0.648074866458964,1.24267862617385,3.94585057078933,0.149516546043979,0,0,0.387479470433193,0.168956125490778,0.117357238645754,0.39061315453185,0.524296722128554,1.20792060413003,2.01621004380506,1.26404448251271,0.608175645870493,0.308132871494482,0.389762468933385,0.179026695667481,0.198681354781265,0,0,0.100966449948148,0.228620419965,0.403304740547362,0.38983152295901,0.0962118416403295,0.350630706544707,0.453460767230423,0.221985953374065,0.0897138566094757,0.167884616364078,0.19318959403219,0.750729901804728,0.549454872801795,1.07184189539533,1.00314420807073,0.564751842617067,0,0.572895513439397,0.343706364687375,0.685082519770642,0.755393897389701,0,0.45032120322422,0.906284817968409,0,0,0,0,0.243106717068294,0.209613162627982,0.183843508450014,0.222246727801615,0,0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| |||
|short_description=p6@Sidt2 | |||
}} | |||
Revision as of 18:02, 14 September 2013
| Short description: | p6@Sidt2 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_6_at_Sidt2_5end |
| Coexpression cluster: | MCL_coexpression_mm9:24 |
| Association with transcript: | 0bp_to_ENSMUST00000114573_5end |
| EntrezGene: | Sidt2 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 1.44e-08 | 25 |
| brush border epithelial cell | 8.50e-08 | 6 |
| gut absorptive cell | 8.50e-08 | 6 |
| enterocyte | 8.50e-08 | 6 |
| intestinal epithelial cell | 1.27e-07 | 9 |
| epithelial cell of alimentary canal | 1.27e-07 | 9 |
| endodermal cell | 4.09e-07 | 20 |
| Ontology term | p-value | n |
|---|---|---|
| intestine | 2.32e-20 | 31 |
| mucosa | 3.70e-13 | 15 |
| gastrointestinal system | 4.30e-13 | 47 |
| intestinal mucosa | 2.82e-11 | 13 |
| wall of intestine | 2.82e-11 | 13 |
| gastrointestinal system mucosa | 2.82e-11 | 13 |
| digestive system | 5.96e-11 | 116 |
| digestive tract | 5.96e-11 | 116 |
| primitive gut | 5.96e-11 | 116 |
| endoderm-derived structure | 1.64e-10 | 118 |
| endoderm | 1.64e-10 | 118 |
| presumptive endoderm | 1.64e-10 | 118 |
| subdivision of digestive tract | 8.37e-10 | 114 |
| organ component layer | 1.85e-08 | 24 |
| epithelium of mucosa | 1.27e-07 | 9 |
| gastrointestinal system epithelium | 1.27e-07 | 9 |
| intestinal epithelium | 1.27e-07 | 9 |
| liver | 6.99e-07 | 22 |
| epithelial sac | 6.99e-07 | 22 |
| digestive gland | 6.99e-07 | 22 |
| epithelium of foregut-midgut junction | 6.99e-07 | 22 |
| anatomical boundary | 6.99e-07 | 22 |
| hepatobiliary system | 6.99e-07 | 22 |
| foregut-midgut junction | 6.99e-07 | 22 |
| hepatic diverticulum | 6.99e-07 | 22 |
| liver primordium | 6.99e-07 | 22 |
| septum transversum | 6.99e-07 | 22 |
| liver bud | 6.99e-07 | 22 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
