FFCP PHASE1:Hg19::chr12:50419177..50419285,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=29127|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9804|TSSclassifier=S|UniProt=Q9H0H5,F8VV37,F8VV47,F8W0L1,F8W1T4,F8VRL2,F8VVY0,F8VVE5,F8VWY4,F8VS54,F8W1E5,F8VV39,F8VXH1,F8VUW9,F8VYH6,F8VRD2|association_with_transcript=0bp_to_ENST00000312377,ENST00000427314,ENST00000454520,ENST00000546595,ENST00000546723,ENST00000546764,ENST00000546786,ENST00000547905,ENST00000548320,ENST00000548598,ENST00000548644,ENST00000548824,ENST00000549777,ENST00000550149,ENST00000550651,ENST00000551260,ENST00000552004,ENST00000552157,ENST00000552310_5end|coexpression_cluster_id=C109|description=CAGE_peak_1_at_RACGAP1_5end|id=chr12:50419177..50419285,-|ontology_enrichment_celltype=CL:0000066!8.56e-14!254;CL:0000548!2.72e-12!679;CL:0000004!2.72e-12!679;CL:0000255!2.72e-12!679;CL:0000012!5.98e-12!682;CL:0000055!1.60e-10!180;CL:0000003!1.35e-07!722;CL:0000333!4.48e-07!41;CL:0002321!8.25e-07!248|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000066,3.61e-14,253;CL:0000333,4.48e-07,41|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:162!8.76e-47!235;DOID:14566!2.37e-46!239;DOID:0050687!5.27e-26!143;DOID:0050686!2.58e-20!137;DOID:305!7.81e-20!106;DOID:2531!1.98e-13!51;DOID:0060083!1.98e-13!51;DOID:1240!4.60e-10!39;DOID:8692!5.47e-07!31|ontology_enrichment_disease_v019=DOID:2531;9.87e-09;51!DOID:0060083;9.87e-09;51!DOID:1240;4.17e-08;39!DOID:305;5.28e-07;106!DOID:8692;8.13e-07;31|ontology_enrichment_disease_v019_2=DOID:162,8.74e-47,235;DOID:14566,2.37e-46,239;DOID:0050687,5.27e-26,143;DOID:0050686,2.58e-20,137;DOID:305,7.81e-20,106;DOID:2531,1.98e-13,51;DOID:0060083,1.98e-13,51;DOID:1240,4.60e-10,39;DOID:8692,5.47e-07,31|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=|phase1_expression=4.36028110249336,9.42042305120326,3.66481450649525,1.0007329835313,4.46961094427288,0.872338524100369,5.06599756336621,1.89515962028049,1.82829939739887,18.1843113011117,1.39560233594486,21.8441372130172,11.605747042052,6.80714941280256,2.31978163009541,6.72325146451775,2.41077811209591,2.92124036154949,4.39139518911456,25.3629379638183,10.2000345622127,3.13454721478088,54.6710735420318,57.89788180583,55.9920172592821,35.0737532383096,30.29511750703,35.0262976845873,2.36018566109342,2.30297638858328,1.70297735647684,22.9855306119732,24.6988853398165,8.13458822366933,30.1347410257373,30.8507234497705,11.450417134059,1.66198622559563,1.00272223735071,0.651032612147555,4.25439401055856,3.56283032620878,2.57575567634187,1.74477886535478,0.755751887377619,1.69808842831471,2.09186133215116,2.46700732813095,1.54853185447552,2.01384674625505,1.0246428261164,1.89185783910868,2.75796544589295,5.16387746867061,1.35426486594342,1.88242339542605,1.63743690034707,3.14612878223118,1.22433556948361,1.60464513538047,4.47535988059329,0.989553900560148,1.59570926097305,1.27867425159808,2.90209238628584,3.40431134814684,0.622822248995575,2.26123798731069,2.08593167368081,1.3031330682307,3.63239701580021,2.94622108790052,1.26584954976354,2.74631872205524,1.27562579979026,1.67726916406701,1.90958672949042,1.20141514273205,1.28580469357664,0.570025487482497,1.39241674039363,1.46131323011707,5.27988733383968,3.27683166757279,7.11607403090844,2.56038133539904,2.80277190925209,5.74752439954483,0.661044872784862,5.72432252721218,0,0,1.52909291250092,2.64342657158052,1.68152568894461,24.4947198840822,1.7703879310245,1.17903228824749,3.70082698199117,8.02495177875255,1.62961133316795,1.4203434172042,1.94826728407911,18.0484940153981,7.65975359434577,3.54454231333794,8.39491977671548,15.8833236459837,14.8267656218261,19.7325485524411,13.5411508715066,24.0536561160094,0.741432815810302,2.1403266247177,1.04535523804977,31.0467598991331,2.68254345521345,2.40539211837841,3.54227568827304,5.73417745783374,3.90650072313851,2.85135613334512,4.21610333417764,4.35154477925022,3.74792179657038,4.02521328474829,7.39015197228942,1.81446068902259,1.60464117470104,1.59306844271079,0,11.4019146149618,16.2385453541284,56.3845077719923,12.0321098552613,10.2841028462185,41.3548692466572,9.73269740605272,34.0325341790644,14.4124108350667,17.9182962813977,16.9617902769538,6.9216104775583,19.2807910247903,8.76277962867645,5.57215159357655,5.45127638127347,1.19245312152671,1.14398982156026,1.48583000531826,23.6527264766379,11.1830497363796,20.4812895948481,12.4367747223282,8.80948816040802,12.105193845363,22.9894463190492,5.94358546089456,6.40379272836078,7.02913286805807,13.696196781711,12.9246257972147,9.76248230192678,20.5891324993686,6.48113558305408,25.0039239195423,18.1868791827198,22.7475190576311,15.3316637465883,22.7823758296351,12.2745168433373,0,0,5.66922267785295,3.47880366186723,26.8456684728909,4.36950296683622,28.3968254541326,37.9495168952242,22.9877816058346,7.47242970107935,3.20667812942308,20.2287173009848,16.7041233366413,31.0577615915572,10.5950199351452,6.91411109375999,15.6995359328644,8.11616199758833,25.1007601479558,10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,1.82089681270989,1.59363533945908,7.18489198317375,27.656157013387,39.0992661517314,5.30163917219287,5.85377684709357,65.3611940088344,32.2571065487001,2.19780659981439,10.5267445243721,18.4979627787101,15.5236982486614,35.1961973686353,44.9086586613827,2.43020250200632,38.713334874518,34.1749790582288,56.1562219537332,5.61197955311177,8.28864656652147,7.1701760379459,3.45629830907046,2.58136415292167,21.1814281307712,21.8998450231035,1.69354820076372,21.3069387745967,12.0980490409085,27.7106292303456,12.5278083613527,87.7463088520272,37.9164746694858,1.29485767437579,1.43727929598746,3.4794432940146,12.1427748264785,48.4254689366559,20.4919298416209,27.7083811511735,47.4373544563632,57.9386523248412,36.2310824560017,6.71415175539119,6.99390593612663,6.58444214906132,2.94177986104687,4.47785439493089,4.51509474364374,8.02025280883132,7.1851473689178,18.3521283862842,5.82700291475092,11.280130395376,33.2804049230013,19.283825369411,14.4686897403434,9.30799853594352,7.30336388246517,3.66983426723633,8.17035623963272,52.8534733347168,4.69141282317311,6.98161104544604,7.40637576721561,21.5757110536716,5.54610754357702,17.7376890470754,22.9622893199844,19.8863340973926,47.1318423762546,18.8679335022666,18.7052183685892,24.1683585776642,38.107545972441,29.1747988140222,36.9790499615526,1.65833887891756,7.55060869791835,6.82348742083139,9.9987061214771,29.0650094262027,22.0985982893254,25.1175372180574,2.16400338145761,3.63810940124795,9.5795369074663,3.42233301085281,14.211283186078,5.09227658288002,6.32054677437425,22.6301086738509,39.2756632829993,25.0993966973022,5.03021131796887,0,2.2003459952916,12.2068853494722,3.32878387092756,3.62292828463847,22.7603629535295|short_description=p1@RACGAP1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=29127 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9804 | |||
|TSSclassifier=S | |||
|UniProt=Q9H0H5,F8VV37,F8VV47,F8W0L1,F8W1T4,F8VRL2,F8VVY0,F8VVE5,F8VWY4,F8VS54,F8W1E5,F8VV39,F8VXH1,F8VUW9,F8VYH6,F8VRD2 | |||
|association_with_transcript=0bp_to_ENST00000312377,ENST00000427314,ENST00000454520,ENST00000546595,ENST00000546723,ENST00000546764,ENST00000546786,ENST00000547905,ENST00000548320,ENST00000548598,ENST00000548644,ENST00000548824,ENST00000549777,ENST00000550149,ENST00000550651,ENST00000551260,ENST00000552004,ENST00000552157,ENST00000552310_5end | |||
|coexpression_cluster_id=C109 | |||
|description=CAGE_peak_1_at_RACGAP1_5end | |||
|id=chr12:50419177..50419285,- | |||
|ontology_enrichment_celltype=CL:0000066!8.56e-14!254;CL:0000548!2.72e-12!679;CL:0000004!2.72e-12!679;CL:0000255!2.72e-12!679;CL:0000012!5.98e-12!682;CL:0000055!1.60e-10!180;CL:0000003!1.35e-07!722;CL:0000333!4.48e-07!41;CL:0002321!8.25e-07!248 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.61e-14,253;CL:0000333,4.48e-07,41 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!8.76e-47!235;DOID:14566!2.37e-46!239;DOID:0050687!5.27e-26!143;DOID:0050686!2.58e-20!137;DOID:305!7.81e-20!106;DOID:2531!1.98e-13!51;DOID:0060083!1.98e-13!51;DOID:1240!4.60e-10!39;DOID:8692!5.47e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:2531;9.87e-09;51!DOID:0060083;9.87e-09;51!DOID:1240;4.17e-08;39!DOID:305;5.28e-07;106!DOID:8692;8.13e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:162,8.74e-47,235;DOID:14566,2.37e-46,239;DOID:0050687,5.27e-26,143;DOID:0050686,2.58e-20,137;DOID:305,7.81e-20,106;DOID:2531,1.98e-13,51;DOID:0060083,1.98e-13,51;DOID:1240,4.60e-10,39;DOID:8692,5.47e-07,31 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| |||
|short_description=p1@RACGAP1 | |||
}} |
Revision as of 22:58, 10 September 2013
Short description: | p1@RACGAP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_RACGAP1_5end |
Coexpression cluster: | C109_Reticulocytes_non_acute_Hodgkin_Burkitt_retinoblastoma_lymphoma |
Association with transcript: | 0bp_to_ENST00000312377, ENST00000427314, ENST00000454520, ENST00000546595, ENST00000546723, ENST00000546764, ENST00000546786, ENST00000547905, ENST00000548320, ENST00000548598, ENST00000548644, ENST00000548824, ENST00000549777, ENST00000550149, ENST00000550651, ENST00000551260, ENST00000552004, ENST00000552157, ENST00000552310_5end |
EntrezGene: | RACGAP1 |
HGNC: | 9804 |
UniProt: | Q9H0H5F8VV37F8VV47F8W0L1F8W1T4F8VRL2F8VVY0F8VVE5F8VWY4F8VS54F8W1E5F8VV39F8VXH1F8VUW9F8VYH6F8VRD2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.61e-14 | 253 |
migratory neural crest cell | 4.48e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
cancer | 8.74e-47 | 235 |
disease of cellular proliferation | 2.37e-46 | 239 |
cell type cancer | 5.27e-26 | 143 |
organ system cancer | 2.58e-20 | 137 |
carcinoma | 7.81e-20 | 106 |
hematologic cancer | 1.98e-13 | 51 |
immune system cancer | 1.98e-13 | 51 |
leukemia | 4.60e-10 | 39 |
myeloid leukemia | 5.47e-07 | 31 |
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