FFCP PHASE1:Hg19::chr17:37824217..37824226,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5409|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9160|TSSclassifier=S|UniProt=A8MT87|association_with_transcript=-7bp_to_ENST00000394246_5end|coexpression_cluster_id=C360|description=CAGE_peak_12_at_PNMT_5end|id=chr17:37824217..37824226,+|ontology_enrichment_celltype=CL:0000349!6.61e-12!3;CL:0002577!6.61e-12!3;CL:0002536!2.14e-08!2|ontology_enrichment_celltype_v019=CL:0002577;4.05e-85;3!CL:0000349;2.45e-24;19!CL:0002536;2.05e-15;2!CL:0002535;2.05e-15;2|ontology_enrichment_celltype_v019_2=CL:0002577,4.06e-85,3;CL:0000349,2.17e-24,19;CL:0002536,1.54e-15,2;CL:0002535,1.78e-15,2|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:4362;6.04e-07;5|ontology_enrichment_disease_v019_2=DOID:4362,5.70e-07,5|ontology_enrichment_uberon=UBERON:0002616!2.65e-22!59;UBERON:0002308!3.39e-22!9;UBERON:0000125!3.39e-22!9;UBERON:0001049!5.27e-21!57;UBERON:0005068!5.27e-21!57;UBERON:0006241!5.27e-21!57;UBERON:0007135!5.27e-21!57;UBERON:0007023!1.86e-20!115;UBERON:0000955!6.09e-18!69;UBERON:0006238!6.09e-18!69;UBERON:0002780!8.10e-18!41;UBERON:0001890!8.10e-18!41;UBERON:0006240!8.10e-18!41;UBERON:0003080!2.63e-17!42;UBERON:0002020!6.91e-17!34;UBERON:0003528!6.91e-17!34;UBERON:0002420!8.62e-17!9;UBERON:0007245!8.62e-17!9;UBERON:0010009!8.62e-17!9;UBERON:0010011!8.62e-17!9;UBERON:0000454!8.62e-17!9;UBERON:0009663!2.80e-16!7;UBERON:0005631!2.63e-15!14;UBERON:0000158!2.63e-15!14;UBERON:0002791!7.30e-15!33;UBERON:0001893!2.39e-14!34;UBERON:0001017!2.79e-14!82;UBERON:0005743!2.24e-13!86;UBERON:0000369!2.28e-13!4;UBERON:0002435!2.28e-13!4;UBERON:0000204!2.28e-13!4;UBERON:0010082!2.28e-13!4;UBERON:0003124!7.74e-13!7;UBERON:0003075!3.45e-12!86;UBERON:0007284!3.45e-12!86;UBERON:0000073!1.28e-11!94;UBERON:0001016!1.28e-11!94;UBERON:0002346!2.01e-11!90;UBERON:0001869!4.09e-11!32;UBERON:0005383!8.65e-11!3;UBERON:0005382!8.65e-11!3;UBERON:0006331!8.94e-11!3;UBERON:0003056!9.14e-11!61;UBERON:0000478!1.62e-10!24;UBERON:0000988!2.25e-10!3;UBERON:0002298!5.09e-10!8;UBERON:0001987!5.14e-09!4;UBERON:0004340!5.14e-09!4;UBERON:0001873!5.67e-08!2;UBERON:0010122!5.67e-08!2;UBERON:0000033!7.86e-08!123;UBERON:0002148!9.43e-08!2;UBERON:0009662!9.43e-08!2;UBERON:0000153!3.06e-07!129;UBERON:0007811!3.06e-07!129;UBERON:0004121!4.53e-07!169;UBERON:0000924!8.91e-07!173;UBERON:0006601!8.91e-07!173;UBERON:0000064!9.00e-07!219|ontology_enrichment_uberon_v019=UBERON:0001987;4.01e-64;4!UBERON:0000478;2.11e-19;24!UBERON:0006955;2.05e-15;2!UBERON:0004801;2.05e-15;2!UBERON:0000474;3.00e-10;37!UBERON:0000077;3.26e-10;27!UBERON:0003100;2.44e-07;41|ontology_enrichment_uberon_v019_2=UBERON:0001987,4.02e-64,4;UBERON:0004340,4.02e-64,4;UBERON:0003124,4.35e-37,7;UBERON:0005631,7.55e-33,14;UBERON:0000158,7.55e-33,14;UBERON:0000995,4.18e-22,21;UBERON:0005795,3.95e-21,22;UBERON:0003975,3.95e-21,22;UBERON:0000478,1.92e-19,24;UBERON:0004175,1.14e-18,25;UBERON:0006955,1.78e-15,2;UBERON:0004801,1.78e-15,2;UBERON:0003134,8.49e-13,37;UBERON:0000474,8.49e-13,37;UBERON:0003100,1.34e-11,41;UBERON:0003133,5.61e-10,48;UBERON:0000077,1.48e-09,29;UBERON:0005156,3.36e-08,59;UBERON:0000990,3.36e-08,59;UBERON:0004923,2.22e-07,66|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.873765488520689,1.84636884759917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0.587403472388222,0,0.206768026122887,0,0,5.75942385747893,1.66435439510497,6.35019615992329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.798317485731266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0,0,0,0.140669416410513,0,0,0,0,0,1.76352923497993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0.110579259931225,0,0,0,0,0.153900517007594,0,0,0,0,0.31900115973192,0,0.533034776018635,0,0,0.498635045700469,0.225595660617181,0,0,0.189753732724185,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0.0633107959558787,0,0,0,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0.136905378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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5409 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9160 | |||
|TSSclassifier=S | |||
|UniProt=A8MT87 | |||
|association_with_transcript=-7bp_to_ENST00000394246_5end | |||
|coexpression_cluster_id=C360 | |||
|description=CAGE_peak_12_at_PNMT_5end | |||
|id=chr17:37824217..37824226,+ | |||
|ontology_enrichment_celltype=CL:0000349!6.61e-12!3;CL:0002577!6.61e-12!3;CL:0002536!2.14e-08!2 | |||
|ontology_enrichment_celltype_v019=CL:0002577;4.05e-85;3!CL:0000349;2.45e-24;19!CL:0002536;2.05e-15;2!CL:0002535;2.05e-15;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002577,4.06e-85,3;CL:0000349,2.17e-24,19;CL:0002536,1.54e-15,2;CL:0002535,1.78e-15,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4362;6.04e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:4362,5.70e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0002616!2.65e-22!59;UBERON:0002308!3.39e-22!9;UBERON:0000125!3.39e-22!9;UBERON:0001049!5.27e-21!57;UBERON:0005068!5.27e-21!57;UBERON:0006241!5.27e-21!57;UBERON:0007135!5.27e-21!57;UBERON:0007023!1.86e-20!115;UBERON:0000955!6.09e-18!69;UBERON:0006238!6.09e-18!69;UBERON:0002780!8.10e-18!41;UBERON:0001890!8.10e-18!41;UBERON:0006240!8.10e-18!41;UBERON:0003080!2.63e-17!42;UBERON:0002020!6.91e-17!34;UBERON:0003528!6.91e-17!34;UBERON:0002420!8.62e-17!9;UBERON:0007245!8.62e-17!9;UBERON:0010009!8.62e-17!9;UBERON:0010011!8.62e-17!9;UBERON:0000454!8.62e-17!9;UBERON:0009663!2.80e-16!7;UBERON:0005631!2.63e-15!14;UBERON:0000158!2.63e-15!14;UBERON:0002791!7.30e-15!33;UBERON:0001893!2.39e-14!34;UBERON:0001017!2.79e-14!82;UBERON:0005743!2.24e-13!86;UBERON:0000369!2.28e-13!4;UBERON:0002435!2.28e-13!4;UBERON:0000204!2.28e-13!4;UBERON:0010082!2.28e-13!4;UBERON:0003124!7.74e-13!7;UBERON:0003075!3.45e-12!86;UBERON:0007284!3.45e-12!86;UBERON:0000073!1.28e-11!94;UBERON:0001016!1.28e-11!94;UBERON:0002346!2.01e-11!90;UBERON:0001869!4.09e-11!32;UBERON:0005383!8.65e-11!3;UBERON:0005382!8.65e-11!3;UBERON:0006331!8.94e-11!3;UBERON:0003056!9.14e-11!61;UBERON:0000478!1.62e-10!24;UBERON:0000988!2.25e-10!3;UBERON:0002298!5.09e-10!8;UBERON:0001987!5.14e-09!4;UBERON:0004340!5.14e-09!4;UBERON:0001873!5.67e-08!2;UBERON:0010122!5.67e-08!2;UBERON:0000033!7.86e-08!123;UBERON:0002148!9.43e-08!2;UBERON:0009662!9.43e-08!2;UBERON:0000153!3.06e-07!129;UBERON:0007811!3.06e-07!129;UBERON:0004121!4.53e-07!169;UBERON:0000924!8.91e-07!173;UBERON:0006601!8.91e-07!173;UBERON:0000064!9.00e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0001987;4.01e-64;4!UBERON:0000478;2.11e-19;24!UBERON:0006955;2.05e-15;2!UBERON:0004801;2.05e-15;2!UBERON:0000474;3.00e-10;37!UBERON:0000077;3.26e-10;27!UBERON:0003100;2.44e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001987,4.02e-64,4;UBERON:0004340,4.02e-64,4;UBERON:0003124,4.35e-37,7;UBERON:0005631,7.55e-33,14;UBERON:0000158,7.55e-33,14;UBERON:0000995,4.18e-22,21;UBERON:0005795,3.95e-21,22;UBERON:0003975,3.95e-21,22;UBERON:0000478,1.92e-19,24;UBERON:0004175,1.14e-18,25;UBERON:0006955,1.78e-15,2;UBERON:0004801,1.78e-15,2;UBERON:0003134,8.49e-13,37;UBERON:0000474,8.49e-13,37;UBERON:0003100,1.34e-11,41;UBERON:0003133,5.61e-10,48;UBERON:0000077,1.48e-09,29;UBERON:0005156,3.36e-08,59;UBERON:0000990,3.36e-08,59;UBERON:0004923,2.22e-07,66 | |||
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|short_description=p12@PNMT | |||
}} |
Revision as of 13:19, 11 September 2013
Short description: | p12@PNMT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_PNMT_5end |
Coexpression cluster: | C360_Placental_Amniotic_amniotic_teratocarcinoma_chorionic_neuroblastoma_H9 |
Association with transcript: | -7bp_to_ENST00000394246_5end |
EntrezGene: | PNMT |
HGNC: | 9160 |
UniProt: | A8MT87 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 4.06e-85 | 3 |
extraembryonic cell | 2.17e-24 | 19 |
amniotic epithelial cell | 1.54e-15 | 2 |
epithelial cell of cervix | 1.78e-15 | 2 |
Ontology term | p-value | n |
---|---|---|
placenta | 4.02e-64 | 4 |
allantois | 4.02e-64 | 4 |
chorion | 4.35e-37 | 7 |
extraembryonic membrane | 7.55e-33 | 14 |
membranous layer | 7.55e-33 | 14 |
uterus | 4.18e-22 | 21 |
embryonic uterus | 3.95e-21 | 22 |
internal female genitalia | 3.95e-21 | 22 |
extraembryonic structure | 1.92e-19 | 24 |
internal genitalia | 1.14e-18 | 25 |
uterine epithelium | 1.78e-15 | 2 |
cervix epithelium | 1.78e-15 | 2 |
female reproductive organ | 8.49e-13 | 37 |
female reproductive system | 8.49e-13 | 37 |
female organism | 1.34e-11 | 41 |
reproductive organ | 5.61e-10 | 48 |
mixed endoderm/mesoderm-derived structure | 1.48e-09 | 29 |
reproductive structure | 3.36e-08 | 59 |
reproductive system | 3.36e-08 | 59 |
organ component layer | 2.22e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
cervical cancer | 5.70e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.