FFCP PHASE1:Hg19::chr19:55450392..55450405,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C146|description=CAGE_peak_at_chr19:55450392..55450405,-|id=chr19:55450392..55450405,-|ontology_enrichment_celltype=CL:0000039!4.78e-34!7;CL:0000586!4.78e-34!7;CL:0000945!3.63e-20!24;CL:0000826!3.63e-20!24;CL:0000542!1.21e-12!53;CL:0000051!1.21e-12!53;CL:0000838!1.40e-10!52;CL:0002541!4.20e-10!3;CL:0000819!3.80e-08!1|ontology_enrichment_celltype_v019=CL:0002541;7.69e-34;3!CL:0000039;2.31e-32;7!CL:0000586;2.31e-32;7!CL:0000785;7.62e-26;1!CL:0000819;7.62e-26;1|ontology_enrichment_celltype_v019_2=CL:0002541,6.51e-34,3;CL:0000039,2.31e-32,7;CL:0000586,2.31e-32,7;CL:0000819,7.62e-26,1;CL:0000785,1.21e-13,2;CL:0000955,1.21e-13,2;CL:0000818,1.21e-13,2;CL:0000954,1.21e-13,2;CL:0000816,1.21e-13,2;CL:0000817,1.54e-09,3|ontology_enrichment_development_v019=CL:0000954;1.21e-13;2!UBERON:0009117;7.67e-11;10!UBERON:0005564;7.67e-11;10|ontology_enrichment_disease=DOID:0060058!5.29e-16!10;DOID:3095!5.95e-14!22;DOID:2994!5.95e-14!22;DOID:0060073!3.80e-08!1;DOID:8675!3.80e-08!1;DOID:12603!4.99e-08!1;DOID:2355!1.87e-07!1|ontology_enrichment_disease_v019=DOID:0060073;7.62e-26;1!DOID:8675;7.62e-26;1!DOID:0060058;7.67e-11;10!DOID:3095;7.93e-11;22!DOID:2994;7.93e-11;22|ontology_enrichment_disease_v019_2=DOID:0060073,7.62e-26,1;DOID:8675,7.62e-26,1;DOID:3095,7.93e-11,22;DOID:2994,7.93e-11,22;DOID:0060058,8.06e-11,10|ontology_enrichment_uberon=UBERON:0000473!1.18e-13!8;UBERON:0000476!4.20e-10!3;UBERON:0000920!4.20e-10!3;UBERON:0003135!5.79e-10!11;UBERON:0003124!3.69e-09!7;UBERON:0002372!1.44e-07!1;UBERON:0001961!1.44e-07!1;UBERON:0001744!1.44e-07!1;UBERON:0001735!1.44e-07!1|ontology_enrichment_uberon_v019=UBERON:0003124;7.69e-34;3!UBERON:0000920;7.69e-34;3!UBERON:0000473;2.65e-13;8!UBERON:0005631;6.60e-11;10!UBERON:0000158;6.60e-11;10!UBERON:0003135;6.06e-10;11|ontology_enrichment_uberon_v019_2=UBERON:0000920,6.51e-34,3;UBERON:0003124,3.53e-15,7;UBERON:0000473,2.65e-13,8;UBERON:0003135,6.06e-10,11;UBERON:0005631,4.49e-08,14;UBERON:0000158,4.49e-08,14|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0.0821005894499457,0.157421562627358,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476981248610684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.743212700502875,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16480387422676,0,0,0,0,0,0.123084805461069,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23056390438806,3.32103284316157,0,0,2.65633020865401,1.5991043280559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45963831372533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.2465215208958,1.33971858218986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109265571963696,0,1.83579893535567,0.801652215796681,0.275684698604535,1.0028301571695,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134704106029175,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr19:55450392..55450405,-}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C146 | |||
|description=CAGE_peak_at_chr19:55450392..55450405,- | |||
|id=chr19:55450392..55450405,- | |||
|ontology_enrichment_celltype=CL:0000039!4.78e-34!7;CL:0000586!4.78e-34!7;CL:0000945!3.63e-20!24;CL:0000826!3.63e-20!24;CL:0000542!1.21e-12!53;CL:0000051!1.21e-12!53;CL:0000838!1.40e-10!52;CL:0002541!4.20e-10!3;CL:0000819!3.80e-08!1 | |||
|ontology_enrichment_celltype_v019=CL:0002541;7.69e-34;3!CL:0000039;2.31e-32;7!CL:0000586;2.31e-32;7!CL:0000785;7.62e-26;1!CL:0000819;7.62e-26;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,6.51e-34,3;CL:0000039,2.31e-32,7;CL:0000586,2.31e-32,7;CL:0000819,7.62e-26,1;CL:0000785,1.21e-13,2;CL:0000955,1.21e-13,2;CL:0000818,1.21e-13,2;CL:0000954,1.21e-13,2;CL:0000816,1.21e-13,2;CL:0000817,1.54e-09,3 | |||
|ontology_enrichment_development_v019=CL:0000954;1.21e-13;2!UBERON:0009117;7.67e-11;10!UBERON:0005564;7.67e-11;10 | |||
|ontology_enrichment_disease=DOID:0060058!5.29e-16!10;DOID:3095!5.95e-14!22;DOID:2994!5.95e-14!22;DOID:0060073!3.80e-08!1;DOID:8675!3.80e-08!1;DOID:12603!4.99e-08!1;DOID:2355!1.87e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:0060073;7.62e-26;1!DOID:8675;7.62e-26;1!DOID:0060058;7.67e-11;10!DOID:3095;7.93e-11;22!DOID:2994;7.93e-11;22 | |||
|ontology_enrichment_disease_v019_2=DOID:0060073,7.62e-26,1;DOID:8675,7.62e-26,1;DOID:3095,7.93e-11,22;DOID:2994,7.93e-11,22;DOID:0060058,8.06e-11,10 | |||
|ontology_enrichment_uberon=UBERON:0000473!1.18e-13!8;UBERON:0000476!4.20e-10!3;UBERON:0000920!4.20e-10!3;UBERON:0003135!5.79e-10!11;UBERON:0003124!3.69e-09!7;UBERON:0002372!1.44e-07!1;UBERON:0001961!1.44e-07!1;UBERON:0001744!1.44e-07!1;UBERON:0001735!1.44e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;7.69e-34;3!UBERON:0000920;7.69e-34;3!UBERON:0000473;2.65e-13;8!UBERON:0005631;6.60e-11;10!UBERON:0000158;6.60e-11;10!UBERON:0003135;6.06e-10;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,6.51e-34,3;UBERON:0003124,3.53e-15,7;UBERON:0000473,2.65e-13,8;UBERON:0003135,6.06e-10,11;UBERON:0005631,4.49e-08,14;UBERON:0000158,4.49e-08,14 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0.0821005894499457,0.157421562627358,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476981248610684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.743212700502875,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16480387422676,0,0,0,0,0,0.123084805461069,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23056390438806,3.32103284316157,0,0,2.65633020865401,1.5991043280559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45963831372533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.2465215208958,1.33971858218986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109265571963696,0,1.83579893535567,0.801652215796681,0.275684698604535,1.0028301571695,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134704106029175,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr19:55450392..55450405,- | |||
}} |
Revision as of 22:23, 11 September 2013
Short description: | p@chr19:55450392..55450405, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:55450392..55450405, - |
Coexpression cluster: | C146_lymphangiectasia_lymphoma_gall_lymph_tonsil_gastric_transitionalcell |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 6.51e-34 | 3 |
germ line cell | 2.31e-32 | 7 |
germ cell | 2.31e-32 | 7 |
B-1 B cell | 7.62e-26 | 1 |
mature B cell | 1.21e-13 | 2 |
pre-B-II cell | 1.21e-13 | 2 |
transitional stage B cell | 1.21e-13 | 2 |
small pre-B-II cell | 1.21e-13 | 2 |
immature B cell | 1.21e-13 | 2 |
precursor B cell | 1.54e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 6.51e-34 | 3 |
chorion | 3.53e-15 | 7 |
testis | 2.65e-13 | 8 |
male reproductive organ | 6.06e-10 | 11 |
extraembryonic membrane | 4.49e-08 | 14 |
membranous layer | 4.49e-08 | 14 |
Ontology term | p-value | n |
---|---|---|
lymphatic system cancer | 7.62e-26 | 1 |
lymphosarcoma | 7.62e-26 | 1 |
germ cell and embryonal cancer | 7.93e-11 | 22 |
germ cell cancer | 7.93e-11 | 22 |
lymphoma | 8.06e-11 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.