FFCP PHASE1:Hg19::chr2:37551812..37551828,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23683|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9408|TSSclassifier=S|UniProt=C9JKP8|association_with_transcript=122bp_to_ENST00000443187_5end|coexpression_cluster_id=C58|description=CAGE_peak_4_at_PRKD3_5end|id=chr2:37551812..37551828,-|ontology_enrichment_celltype=CL:0000148!8.19e-08!10;CL:0000541!8.19e-08!10|ontology_enrichment_celltype_v019=CL:0000148;1.37e-24;10!CL:0000147;3.80e-17;14!CL:0002567;6.88e-13;3!CL:0000710;1.45e-11;20!CL:0000062;3.10e-10;9!CL:0000075;3.39e-08;27|ontology_enrichment_celltype_v019_2=CL:0000148,2.02e-24,10;CL:0000541,2.02e-24,10;CL:0000147,4.99e-17,14;CL:0002567,6.96e-13,3;CL:0000710,1.74e-11,20;CL:0000062,2.84e-08,11;CL:0000375,2.84e-08,11;CL:0000335,2.84e-08,11;CL:0000075,3.86e-08,27|ontology_enrichment_development_v019=CL:0000335;2.58e-08;11|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:1909;4.08e-09;2|ontology_enrichment_disease_v019_2=DOID:1909,3.58e-09,2|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=|phase1_expression=0.363356758541113,0.428201047781966,0.281908808191942,0,0,0.872338524100369,2.53299878168311,0.631719873426831,0,0,0,0.218441372130172,0,0,0,0.672325146451775,0,0.730310090387373,1.95173119516203,0.246242116153576,0,0,0,0.136874425072884,0.502170558379211,0.0764134057479513,0.0821005894499457,0,0.393364276848904,0.767658796194425,0.309632246632152,0,0.30120591877825,0.369754010166788,0.852139206383318,0.426507697462265,0.293600439334847,0,0,0.217010870715852,0,0,0,0.290796477559129,0,0.970336244751265,0,0.411167888021826,0.309706370895104,0.28769239232215,0,0,0.344745680736619,0,0,0.188242339542605,0.545812300115692,0,0.306083892370903,0,0,0.329851300186716,0.199463657621632,0.426224750532694,1.16083695451434,0,0,0.251248665256743,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0.800791974072025,0,0.661044872784862,0,1.1384259382189,1.17447437874188,1.52909291250092,0,1.12101712596307,0.263384084775077,0.196709770113833,0,0,0,0,0,0,0.222820913770347,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0.226618685395132,0.383220493601921,0,0.253019692019503,0,0,0,0.150575119077773,0.255973222308837,0,0,0,1.61285394579786,0,0.144824403882799,0,0,0.511450247374121,0.361439152384566,0.50133791063589,0.144846518960824,0,0,0.189069634328136,0,0,0.0654895377488563,0.364295288292542,0.370784442784429,0.324547393654683,0.522389211897802,0.398873881556595,0.238490624305342,0,0,0.596287222100115,1.72046919021225,0,0.56530794192401,0.419499436209906,0.275118041940067,0.208994966536811,0.516833518338658,0,1.00416183829401,0,0,0.24406205754817,0.367663080345869,0.81014194788176,0.357198913136319,0,0.112611480483322,0,0,0.366403487860815,0,0,0,0,0.506522046658319,0.529636723252875,0.286836620748814,0.354668382198357,0.560677600142307,0,0,0.311211035399766,0.942974704487816,0.326923806226917,0,1.72852777344,0,0.312160076830321,0,0.149448680551801,0.117434498643765,0,0,0,0,0,0,0.247266929278557,0,0,0.336672227908132,0.125118519871964,0,0,0.30648779579902,0.300476117813194,0.226864366320042,0.538168907066586,0.640672166455702,0.211931901159562,0,0.412210116953756,0.515281080091258,0.18611685633159,0.337552664482532,0.389748020644795,0.757301322732344,0.0920498986422993,0.323292113637624,0.710019185033229,0.705264687593482,0.339121184620975,0,0,0.286804595389004,0.243947412259191,0.397589304964456,0.929551542956147,1.0366105501537,0.252320850875628,0,0,0,0,0.464367928031979,0,0.118306800039844,0,0,0.220587945464788,0.435758888184812,0,0,0.392442930250692,0.38474715694639,0.738155454624648,1.40241773803446,0,0,0,0,0,0.441463099414651,0.122988438543114,0.343135620597051,0.219500570817251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0.16798212819886,0.425325291727159,0.179117045405697,0.290633938513962,0,0,0,0.621984346622316,0.144119953416961,0.25248486685276,18.6048830276055,4.58386110669933,5.86087236050235,8.55362230113526,2.57068731758309,16.5188681814155,12.862189468376,0,0,0.1466765716419,0.387815147273333,0,0,0.26593811658487,0,0,0,0,0.285955987316295,0.542621605391443,0,0.325736184293735,0,0,0,0,0,0,0.502257091432126,0,0,0,1.42636905040718,0,0,0.179060963239896,0.560425719967636,0.394061520403854,0.431255149719035,0.77005821767849,0.254094624222463,0,0,0.335032530668698,0.637938751653163,0,0,0,0.12269149171914,0.500170521059677,0,0.207970861530807,0.713715955188647,0,0.117141414992713,0.902838299183157,0,1.03473071292505,1.32845119707087,0.184369168541703,0.173767228936166,0,0,0.206768026122887,0.431428401637234,0.213455115606889,0,0,0,0.248107807818777,0.153461973288062,0.280660094433074,0.256278298511402,0,0.482561763430822,0,0.925258162815933,0.355123450626254,0.739144404124282,1.03850885836724,1.04589340613963,0.362578348774867,0.601519410909855,0.0920809889358963,0.229628896329213,0.182091168006717,0.131124414959424,0,0.0770153371044148,0,0,0,0,0.170093705276516,0,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0.51520505823861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0785353,0.99798106963804,0.162806537221949,0,0,0.0898252021065869,2.34640942403454,0.977931553462932,0,0,0.603821380773079,0|short_description=p4@PRKD3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=23683 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9408 | |||
|TSSclassifier=S | |||
|UniProt=C9JKP8 | |||
|association_with_transcript=122bp_to_ENST00000443187_5end | |||
|coexpression_cluster_id=C58 | |||
|description=CAGE_peak_4_at_PRKD3_5end | |||
|id=chr2:37551812..37551828,- | |||
|ontology_enrichment_celltype=CL:0000148!8.19e-08!10;CL:0000541!8.19e-08!10 | |||
|ontology_enrichment_celltype_v019=CL:0000148;1.37e-24;10!CL:0000147;3.80e-17;14!CL:0002567;6.88e-13;3!CL:0000710;1.45e-11;20!CL:0000062;3.10e-10;9!CL:0000075;3.39e-08;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,2.02e-24,10;CL:0000541,2.02e-24,10;CL:0000147,4.99e-17,14;CL:0002567,6.96e-13,3;CL:0000710,1.74e-11,20;CL:0000062,2.84e-08,11;CL:0000375,2.84e-08,11;CL:0000335,2.84e-08,11;CL:0000075,3.86e-08,27 | |||
|ontology_enrichment_development_v019=CL:0000335;2.58e-08;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1909;4.08e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,3.58e-09,2 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| |||
|short_description=p4@PRKD3 | |||
}} |
Revision as of 18:27, 12 September 2013
Short description: | p4@PRKD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_PRKD3_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | 122bp_to_ENST00000443187_5end |
EntrezGene: | PRKD3 |
HGNC: | 9408 |
UniProt: | C9JKP8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 2.02e-24 | 10 |
melanoblast | 2.02e-24 | 10 |
pigment cell | 4.99e-17 | 14 |
light melanocyte | 6.96e-13 | 3 |
neurecto-epithelial cell | 1.74e-11 | 20 |
osteoblast | 2.84e-08 | 11 |
osteoprogenitor cell | 2.84e-08 | 11 |
mesenchyme condensation cell | 2.84e-08 | 11 |
columnar/cuboidal epithelial cell | 3.86e-08 | 27 |
Ontology term | p-value | n |
---|---|---|
melanoma | 3.58e-09 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.