FFCP PHASE1:Hg19::chr3:55516739..55516751,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:55516739..55516751,-|id=chr3:55516739..55516751,-|ontology_enrichment_celltype=CL:0000055!3.91e-17!180;CL:0000057!2.72e-12!75;CL:0002620!4.48e-12!23;CL:0002552!3.13e-08!5;CL:0000188!1.62e-07!9|ontology_enrichment_celltype_v019=CL:0000349;5.20e-20;19!CL:0002561;7.04e-13;2!CL:0002537;7.20e-12;5!CL:0002559;2.75e-11;5!CL:0002577;1.33e-09;3!CL:0000064;7.00e-09;3!CL:0000067;7.00e-09;3!CL:0005012;7.00e-09;3!CL:0002304;7.00e-09;3!CL:0000342;2.82e-07;1!CL:0002565;2.82e-07;1|ontology_enrichment_celltype_v019_2=CL:0000349,5.42e-20,19;CL:0002561,3.39e-13,2;CL:0002537,8.99e-12,5;CL:0002559,1.61e-11,5;CL:0002577,1.25e-09,3;CL:0000064,8.23e-09,3;CL:0000067,8.23e-09,3;CL:0005012,8.23e-09,3;CL:0002304,8.23e-09,3;CL:0000342,4.34e-07,1;CL:0002565,4.34e-07,1|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005631!3.69e-16!14;UBERON:0000158!3.69e-16!14;UBERON:0000478!2.35e-11!24;UBERON:0002199!2.65e-09!45;UBERON:0002416!2.65e-09!45;UBERON:0000305!3.20e-09!7;UBERON:0002097!1.39e-08!40;UBERON:0003124!1.41e-08!7;UBERON:0004871!6.28e-08!8;UBERON:0003102!1.16e-07!95;UBERON:0000488!1.70e-07!4;UBERON:0001987!5.14e-07!4;UBERON:0004340!5.14e-07!4|ontology_enrichment_uberon_v019=UBERON:0000478;1.36e-15;24!UBERON:0005631;1.98e-15;10!UBERON:0000158;1.98e-15;10!UBERON:0000305;2.36e-14;7!UBERON:0000488;5.65e-14;4!UBERON:0005933;7.04e-13;2!UBERON:0005942;7.04e-13;2!UBERON:0005932;7.04e-13;2!UBERON:0002073;2.75e-11;5!UBERON:0002203;1.73e-09;6!UBERON:0001768;1.73e-09;6!UBERON:0002200;1.73e-09;6!UBERON:0001778;7.00e-09;3!UBERON:0001775;7.00e-09;3!UBERON:0001987;2.11e-07;4!UBERON:0002506;2.82e-07;1!UBERON:0001769;2.82e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0005631,3.44e-21,14;UBERON:0000158,3.44e-21,14;UBERON:0000478,1.40e-15,24;UBERON:0000305,2.28e-14,7;UBERON:0000488,9.28e-14,4;UBERON:0005933,3.39e-13,2;UBERON:0005942,3.39e-13,2;UBERON:0005932,3.39e-13,2;UBERON:0004871,1.37e-12,8;UBERON:0002073,1.61e-11,5;UBERON:0005086,1.61e-11,5;UBERON:0002203,2.39e-09,6;UBERON:0001768,2.39e-09,6;UBERON:0002200,2.39e-09,6;UBERON:0004923,2.55e-09,66;UBERON:0003124,7.56e-09,7;UBERON:0001778,8.23e-09,3;UBERON:0001775,8.23e-09,3;UBERON:0001987,2.01e-07,4;UBERON:0004340,2.01e-07,4;UBERON:0002199,2.92e-07,46;UBERON:0002416,2.92e-07,46;UBERON:0002506,4.34e-07,1;UBERON:0001769,4.34e-07,1|phase1_expression=0,0,0,1.0007329835313,0,0,2.53299878168311,0,0,0,0,1.74753097704138,0.791300934685361,0,0.331397375727916,0,0,0,0,0.861847406537515,1.02000345622126,0.940364164434263,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0.50133791063589,1.15877215168659,0.795285947051099,0,0.378139268656271,1.10864698731282,1.22968699970376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0.161872944368132,0.140450806702248,0.61246251376468,0.122834317311768,0.206651562351531,3.56400857184616,2.22540236350701,0,0,0.168336113954066,0.250237039743928,0,0,0.612975591598039,0.600952235626387,0,0.717558542755448,1.92201649936711,0,0.600182192168805,1.23663035086127,1.03056216018252,0.744467425326359,0,0,0.757301322732344,1.56484827691909,0.161646056818812,0.710019185033229,0.10075209822764,0,0,0,0,0,0,0.232387885739037,0.207322110030741,0,0,0,0,1.38134921352481,1.85747171212792,1.44375896333917,0,0.168584690078102,0,0.110293972732394,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02940686179115,0,0,0,0,0,0,0,0.115930404975077,0.70445216541493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0.22001485746285,0,0,0,3.45719551560332,1.04007436911366,0.514414748524284,0,0,0.285955987316295,0,0.823240336780769,0.325736184293735,0,2.37585561880029,0,0,0.099972991182057,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.178428988797162,1.73472656537328,0.585707074963566,0.300946099727719,0,0,0,0.368738337083406,0.868836144680828,0,0,0,0,0,0.303127571446259,4.99306318531491,3.62868351995616,0.248107807818777,0.306923946576125,0,0,0,0,0,0.462629081407967,0,0.246381468041427,1.03850885836724,0.232420756919918,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.580024309752732,0,0.307007349452259,0.551346289938122,0.429680979473094,0.580066775656914,0.170453254832202,0.178064071293475,0,0,0,0,0,1.25924938732256,0,0,0,2.60979897622522,0,0,0,0,0,0,0,0.318203247925937,0,0.359744915166629,0.274537029736055,0.353437207037059,0,0,0,0,0.243713489631284,0,0.9554993798559,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0.0982490410131212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,3.56357616999166,0.614321404198464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0.957003479195758,3.29751336246704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.857974989309823,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321506296930038,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,2.89659637035217,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0.147855149989634,0.159296767163702,0.449803112163605,0.465788870628778,0,0,5.73919567992907,0.450772826991655,0,0,2.54588122883583,0.214821114084977,0,3.98095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.736423801007363,0,0,0,0,0.157265941855896,0,0.169732529954025,1.2754495206101,0.867550349813015,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0.90356865631168,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,0,0,0,0,0,0,0,0.315543124386369,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.665320713092027,0,0,0,0,0,0,0,0,0,0|short_description=p@chr3:55516739..55516751,-}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:55516739..55516751,- | |||
|id=chr3:55516739..55516751,- | |||
|ontology_enrichment_celltype=CL:0000055!3.91e-17!180;CL:0000057!2.72e-12!75;CL:0002620!4.48e-12!23;CL:0002552!3.13e-08!5;CL:0000188!1.62e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000349;5.20e-20;19!CL:0002561;7.04e-13;2!CL:0002537;7.20e-12;5!CL:0002559;2.75e-11;5!CL:0002577;1.33e-09;3!CL:0000064;7.00e-09;3!CL:0000067;7.00e-09;3!CL:0005012;7.00e-09;3!CL:0002304;7.00e-09;3!CL:0000342;2.82e-07;1!CL:0002565;2.82e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,5.42e-20,19;CL:0002561,3.39e-13,2;CL:0002537,8.99e-12,5;CL:0002559,1.61e-11,5;CL:0002577,1.25e-09,3;CL:0000064,8.23e-09,3;CL:0000067,8.23e-09,3;CL:0005012,8.23e-09,3;CL:0002304,8.23e-09,3;CL:0000342,4.34e-07,1;CL:0002565,4.34e-07,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!3.69e-16!14;UBERON:0000158!3.69e-16!14;UBERON:0000478!2.35e-11!24;UBERON:0002199!2.65e-09!45;UBERON:0002416!2.65e-09!45;UBERON:0000305!3.20e-09!7;UBERON:0002097!1.39e-08!40;UBERON:0003124!1.41e-08!7;UBERON:0004871!6.28e-08!8;UBERON:0003102!1.16e-07!95;UBERON:0000488!1.70e-07!4;UBERON:0001987!5.14e-07!4;UBERON:0004340!5.14e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;1.36e-15;24!UBERON:0005631;1.98e-15;10!UBERON:0000158;1.98e-15;10!UBERON:0000305;2.36e-14;7!UBERON:0000488;5.65e-14;4!UBERON:0005933;7.04e-13;2!UBERON:0005942;7.04e-13;2!UBERON:0005932;7.04e-13;2!UBERON:0002073;2.75e-11;5!UBERON:0002203;1.73e-09;6!UBERON:0001768;1.73e-09;6!UBERON:0002200;1.73e-09;6!UBERON:0001778;7.00e-09;3!UBERON:0001775;7.00e-09;3!UBERON:0001987;2.11e-07;4!UBERON:0002506;2.82e-07;1!UBERON:0001769;2.82e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,3.44e-21,14;UBERON:0000158,3.44e-21,14;UBERON:0000478,1.40e-15,24;UBERON:0000305,2.28e-14,7;UBERON:0000488,9.28e-14,4;UBERON:0005933,3.39e-13,2;UBERON:0005942,3.39e-13,2;UBERON:0005932,3.39e-13,2;UBERON:0004871,1.37e-12,8;UBERON:0002073,1.61e-11,5;UBERON:0005086,1.61e-11,5;UBERON:0002203,2.39e-09,6;UBERON:0001768,2.39e-09,6;UBERON:0002200,2.39e-09,6;UBERON:0004923,2.55e-09,66;UBERON:0003124,7.56e-09,7;UBERON:0001778,8.23e-09,3;UBERON:0001775,8.23e-09,3;UBERON:0001987,2.01e-07,4;UBERON:0004340,2.01e-07,4;UBERON:0002199,2.92e-07,46;UBERON:0002416,2.92e-07,46;UBERON:0002506,4.34e-07,1;UBERON:0001769,4.34e-07,1 | |||
|phase1_expression=0,0,0,1.0007329835313,0,0,2.53299878168311,0,0,0,0,1.74753097704138,0.791300934685361,0,0.331397375727916,0,0,0,0,0.861847406537515,1.02000345622126,0.940364164434263,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0.50133791063589,1.15877215168659,0.795285947051099,0,0.378139268656271,1.10864698731282,1.22968699970376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0.161872944368132,0.140450806702248,0.61246251376468,0.122834317311768,0.206651562351531,3.56400857184616,2.22540236350701,0,0,0.168336113954066,0.250237039743928,0,0,0.612975591598039,0.600952235626387,0,0.717558542755448,1.92201649936711,0,0.600182192168805,1.23663035086127,1.03056216018252,0.744467425326359,0,0,0.757301322732344,1.56484827691909,0.161646056818812,0.710019185033229,0.10075209822764,0,0,0,0,0,0,0.232387885739037,0.207322110030741,0,0,0,0,1.38134921352481,1.85747171212792,1.44375896333917,0,0.168584690078102,0,0.110293972732394,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02940686179115,0,0,0,0,0,0,0,0.115930404975077,0.70445216541493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0.22001485746285,0,0,0,3.45719551560332,1.04007436911366,0.514414748524284,0,0,0.285955987316295,0,0.823240336780769,0.325736184293735,0,2.37585561880029,0,0,0.099972991182057,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.178428988797162,1.73472656537328,0.585707074963566,0.300946099727719,0,0,0,0.368738337083406,0.868836144680828,0,0,0,0,0,0.303127571446259,4.99306318531491,3.62868351995616,0.248107807818777,0.306923946576125,0,0,0,0,0,0.462629081407967,0,0.246381468041427,1.03850885836724,0.232420756919918,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.580024309752732,0,0.307007349452259,0.551346289938122,0.429680979473094,0.580066775656914,0.170453254832202,0.178064071293475,0,0,0,0,0,1.25924938732256,0,0,0,2.60979897622522,0,0,0,0,0,0,0,0.318203247925937,0,0.359744915166629,0.274537029736055,0.353437207037059,0,0,0,0,0.243713489631284,0,0.9554993798559,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0.0982490410131212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,3.56357616999166,0.614321404198464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0.957003479195758,3.29751336246704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.857974989309823,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321506296930038,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,2.89659637035217,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0.147855149989634,0.159296767163702,0.449803112163605,0.465788870628778,0,0,5.73919567992907,0.450772826991655,0,0,2.54588122883583,0.214821114084977,0,3.98095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.736423801007363,0,0,0,0,0.157265941855896,0,0.169732529954025,1.2754495206101,0.867550349813015,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0.90356865631168,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,0,0,0,0,0,0,0,0.315543124386369,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.665320713092027,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr3:55516739..55516751,- | |||
}} |
Revision as of 00:56, 13 September 2013
Short description: | p@chr3:55516739..55516751, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:55516739..55516751, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 5.42e-20 | 19 |
outer root sheath cell | 3.39e-13 | 2 |
amnion mesenchymal stem cell | 8.99e-12 | 5 |
hair follicle cell | 1.61e-11 | 5 |
placental epithelial cell | 1.25e-09 | 3 |
ciliated cell | 8.23e-09 | 3 |
ciliated epithelial cell | 8.23e-09 | 3 |
multi-ciliated epithelial cell | 8.23e-09 | 3 |
non-pigmented ciliary epithelial cell | 8.23e-09 | 3 |
pigment cell (sensu Vertebrata) | 4.34e-07 | 1 |
iris pigment epithelial cell | 4.34e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 3.44e-21 | 14 |
membranous layer | 3.44e-21 | 14 |
extraembryonic structure | 1.40e-15 | 24 |
amnion | 2.28e-14 | 7 |
atypical epithelium | 9.28e-14 | 4 |
hair root sheath | 3.39e-13 | 2 |
hair outer root sheath | 3.39e-13 | 2 |
bulb of hair follicle | 3.39e-13 | 2 |
somatic layer of lateral plate mesoderm | 1.37e-12 | 8 |
hair follicle | 1.61e-11 | 5 |
hair follicle placode | 1.61e-11 | 5 |
vasculature of eye | 2.39e-09 | 6 |
uvea | 2.39e-09 | 6 |
vasculature of head | 2.39e-09 | 6 |
organ component layer | 2.55e-09 | 66 |
chorion | 7.56e-09 | 7 |
ciliary epithelium | 8.23e-09 | 3 |
ciliary body | 8.23e-09 | 3 |
placenta | 2.01e-07 | 4 |
allantois | 2.01e-07 | 4 |
integument | 2.92e-07 | 46 |
integumental system | 2.92e-07 | 46 |
iris epithelium | 4.34e-07 | 1 |
iris | 4.34e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.