FFCP PHASE1:Hg19::chr6:132935900..132935911,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C318|description=CAGE_peak_at_chr6:132935900..132935911,-|id=chr6:132935900..132935911,-|ontology_enrichment_celltype=CL:1001319!1.25e-07!1;CL:1000600!1.25e-07!1;CL:0000083!3.52e-07!4|ontology_enrichment_celltype_v019=CL:0002178;9.90e-11;3!CL:0000083;2.26e-08;4!CL:0002563;2.26e-08;4|ontology_enrichment_celltype_v019_2=CL:0002178,1.09e-10,3;CL:0002563,1.96e-08,4;CL:0000083,2.11e-08,4;CL:0000223,2.57e-08,58|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:170!7.73e-10!6;DOID:305!2.80e-07!106;DOID:1793!3.52e-07!4|ontology_enrichment_disease_v019=DOID:4929;2.05e-15;2!DOID:3493;2.05e-15;2!DOID:299;7.16e-11;25!DOID:1793;2.26e-08;4|ontology_enrichment_disease_v019_2=DOID:4929,1.78e-15,2;DOID:3493,2.37e-15,2;DOID:299,7.67e-11,25;DOID:1793,2.11e-08,4;DOID:305,5.49e-07,106|ontology_enrichment_uberon=UBERON:0002294!3.96e-14!7;UBERON:0001173!3.96e-14!7;UBERON:0004912!3.96e-14!7;UBERON:0009497!3.11e-11!25;UBERON:0000015!3.11e-11!25;UBERON:0002423!3.11e-11!25;UBERON:0006235!3.11e-11!25;UBERON:0004161!3.11e-11!25;UBERON:0003929!1.18e-09!54;UBERON:0002110!3.67e-09!3;UBERON:0006242!3.67e-09!3;UBERON:0001007!4.75e-09!155;UBERON:0001555!4.75e-09!155;UBERON:0007026!4.75e-09!155;UBERON:0006331!7.91e-09!3;UBERON:0005911!1.67e-08!82;UBERON:0002075!1.88e-08!18;UBERON:0007499!2.43e-08!25;UBERON:0004119!5.27e-08!169;UBERON:0000925!5.27e-08!169;UBERON:0006595!5.27e-08!169;UBERON:0009856!5.35e-08!26;UBERON:0004921!1.19e-07!129;UBERON:0004185!1.19e-07!129;UBERON:0004645!1.25e-07!1;UBERON:0001256!1.25e-07!1;UBERON:0001259!1.25e-07!1;UBERON:0002038!3.01e-07!1;UBERON:0009661!3.01e-07!1;UBERON:0002902!4.09e-07!1;UBERON:0009899!4.09e-07!1;UBERON:0002336!4.34e-07!1;UBERON:0001018!4.34e-07!1;UBERON:0002473!4.34e-07!1;UBERON:0005340!4.34e-07!1;UBERON:0002316!4.34e-07!1;UBERON:0003544!4.34e-07!1;UBERON:0001020!4.34e-07!1;UBERON:0005970!4.34e-07!1;UBERON:0002437!4.34e-07!1;UBERON:0002372!4.61e-07!1;UBERON:0001961!4.61e-07!1;UBERON:0001744!4.61e-07!1;UBERON:0001735!4.61e-07!1;UBERON:0002022!4.90e-07!1;UBERON:0002394!6.07e-07!4;UBERON:0003928!6.07e-07!4;UBERON:0008835!8.03e-07!22;UBERON:0003894!8.03e-07!22|ontology_enrichment_uberon_v019=UBERON:0005409;9.39e-12;22!UBERON:0001242;2.26e-08;4!UBERON:0001262;2.26e-08;4!UBERON:0004786;2.26e-08;4!UBERON:0004808;2.26e-08;4!UBERON:0001277;2.26e-08;4!UBERON:0004921;7.94e-08;33!UBERON:0000160;3.04e-07;17!UBERON:0002108;6.04e-07;4!UBERON:0000945;6.04e-07;5!UBERON:0010039;6.04e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0005409,1.71e-10,25;UBERON:0001242,1.96e-08,4;UBERON:0001262,1.96e-08,4;UBERON:0004786,1.96e-08,4;UBERON:0004808,1.96e-08,4;UBERON:0001277,1.96e-08,4;UBERON:0000160,2.86e-07,17;UBERON:0002108,6.04e-07,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,1.8448265781467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604297247958111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30998378285754,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0.0898683511473268,0.358042349351218,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353830258013357,0,0,0,0,0.067401132980677,0,0,0,0.19566461893209,0,0,0,0,0,0.300646838828985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160317640503067,0.640358984218058,0,0,0,0,2.0167671718341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.20093133542917,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0.179088841081487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3741032706134,0,0,0,0,0,0,0,0,0,0,0,1.543483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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C318 | |||
|description=CAGE_peak_at_chr6:132935900..132935911,- | |||
|id=chr6:132935900..132935911,- | |||
|ontology_enrichment_celltype=CL:1001319!1.25e-07!1;CL:1000600!1.25e-07!1;CL:0000083!3.52e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002178;9.90e-11;3!CL:0000083;2.26e-08;4!CL:0002563;2.26e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,1.09e-10,3;CL:0002563,1.96e-08,4;CL:0000083,2.11e-08,4;CL:0000223,2.57e-08,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:170!7.73e-10!6;DOID:305!2.80e-07!106;DOID:1793!3.52e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:4929;2.05e-15;2!DOID:3493;2.05e-15;2!DOID:299;7.16e-11;25!DOID:1793;2.26e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:4929,1.78e-15,2;DOID:3493,2.37e-15,2;DOID:299,7.67e-11,25;DOID:1793,2.11e-08,4;DOID:305,5.49e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0002294!3.96e-14!7;UBERON:0001173!3.96e-14!7;UBERON:0004912!3.96e-14!7;UBERON:0009497!3.11e-11!25;UBERON:0000015!3.11e-11!25;UBERON:0002423!3.11e-11!25;UBERON:0006235!3.11e-11!25;UBERON:0004161!3.11e-11!25;UBERON:0003929!1.18e-09!54;UBERON:0002110!3.67e-09!3;UBERON:0006242!3.67e-09!3;UBERON:0001007!4.75e-09!155;UBERON:0001555!4.75e-09!155;UBERON:0007026!4.75e-09!155;UBERON:0006331!7.91e-09!3;UBERON:0005911!1.67e-08!82;UBERON:0002075!1.88e-08!18;UBERON:0007499!2.43e-08!25;UBERON:0004119!5.27e-08!169;UBERON:0000925!5.27e-08!169;UBERON:0006595!5.27e-08!169;UBERON:0009856!5.35e-08!26;UBERON:0004921!1.19e-07!129;UBERON:0004185!1.19e-07!129;UBERON:0004645!1.25e-07!1;UBERON:0001256!1.25e-07!1;UBERON:0001259!1.25e-07!1;UBERON:0002038!3.01e-07!1;UBERON:0009661!3.01e-07!1;UBERON:0002902!4.09e-07!1;UBERON:0009899!4.09e-07!1;UBERON:0002336!4.34e-07!1;UBERON:0001018!4.34e-07!1;UBERON:0002473!4.34e-07!1;UBERON:0005340!4.34e-07!1;UBERON:0002316!4.34e-07!1;UBERON:0003544!4.34e-07!1;UBERON:0001020!4.34e-07!1;UBERON:0005970!4.34e-07!1;UBERON:0002437!4.34e-07!1;UBERON:0002372!4.61e-07!1;UBERON:0001961!4.61e-07!1;UBERON:0001744!4.61e-07!1;UBERON:0001735!4.61e-07!1;UBERON:0002022!4.90e-07!1;UBERON:0002394!6.07e-07!4;UBERON:0003928!6.07e-07!4;UBERON:0008835!8.03e-07!22;UBERON:0003894!8.03e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;9.39e-12;22!UBERON:0001242;2.26e-08;4!UBERON:0001262;2.26e-08;4!UBERON:0004786;2.26e-08;4!UBERON:0004808;2.26e-08;4!UBERON:0001277;2.26e-08;4!UBERON:0004921;7.94e-08;33!UBERON:0000160;3.04e-07;17!UBERON:0002108;6.04e-07;4!UBERON:0000945;6.04e-07;5!UBERON:0010039;6.04e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,1.71e-10,25;UBERON:0001242,1.96e-08,4;UBERON:0001262,1.96e-08,4;UBERON:0004786,1.96e-08,4;UBERON:0004808,1.96e-08,4;UBERON:0001277,1.96e-08,4;UBERON:0000160,2.86e-07,17;UBERON:0002108,6.04e-07,4 | |||
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|short_description=p@chr6:132935900..132935911,- | |||
}} |
Revision as of 18:01, 13 September 2013
Short description: | p@chr6:132935900..132935911, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr6:132935900..132935911, - |
Coexpression cluster: | C318_hepatoma_Intestinal_bile_small_colon_Prostate_endometrial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 1.09e-10 | 3 |
intestinal epithelial cell | 1.96e-08 | 4 |
epithelial cell of pancreas | 2.11e-08 | 4 |
endodermal cell | 2.57e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 1.71e-10 | 25 |
intestinal mucosa | 1.96e-08 | 4 |
wall of intestine | 1.96e-08 | 4 |
gastrointestinal system mucosa | 1.96e-08 | 4 |
gastrointestinal system epithelium | 1.96e-08 | 4 |
intestinal epithelium | 1.96e-08 | 4 |
intestine | 2.86e-07 | 17 |
small intestine | 6.04e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
tubular adenocarcinoma | 1.78e-15 | 2 |
signet ring cell adenocarcinoma | 2.37e-15 | 2 |
adenocarcinoma | 7.67e-11 | 25 |
pancreatic cancer | 2.11e-08 | 4 |
carcinoma | 5.49e-07 | 106 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.