FFCP PHASE1:Hg19::chr9:3971860..3971870,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C70|description=CAGE_peak_at_chr9:3971860..3971870,+|id=chr9:3971860..3971870,+|ontology_enrichment_celltype=CL:0002605!3.28e-16!3;CL:0000128!4.20e-12!7;CL:0000126!4.20e-12!7;CL:0000127!4.20e-12!7;CL:0002453!4.20e-12!7;CL:0002319!5.89e-11!25;CL:0000243!1.70e-10!15;CL:0000125!1.70e-10!15;CL:0000030!1.70e-10!15;CL:0000339!1.70e-10!15;CL:0000095!2.53e-09!17;CL:0000123!2.53e-09!17;CL:0000062!3.22e-07!11;CL:0000375!3.22e-07!11;CL:0000335!3.22e-07!11|ontology_enrichment_celltype_v019=CL:0000128;5.13e-17;7!CL:0000126;5.13e-17;7!CL:0000127;5.13e-17;7!CL:0000243;1.30e-15;15!CL:0000125;1.30e-15;15!CL:0000095;4.74e-14;17!CL:0002605;1.09e-10;3!CL:0002319;4.19e-10;25|ontology_enrichment_celltype_v019_2=CL:0000128,5.13e-17,7;CL:0000126,5.13e-17,7;CL:0000127,5.13e-17,7;CL:0002453,5.13e-17,7;CL:0000243,1.30e-15,15;CL:0000125,1.30e-15,15;CL:0000030,1.30e-15,15;CL:0000339,1.30e-15,15;CL:0000095,4.74e-14,17;CL:0000123,4.74e-14,17;CL:0002605,9.90e-11,3;CL:0002319,4.19e-10,25|ontology_enrichment_development_v019=UBERON:0008801;7.48e-30;1!CL:0000339;1.30e-15;15!UBERON:0006238;2.98e-11;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3093;2.13e-10;11|ontology_enrichment_disease_v019_2=DOID:3093,2.24e-10,11|ontology_enrichment_uberon=UBERON:0001896!2.31e-15!3;UBERON:0005290!2.31e-15!3;UBERON:0010096!2.31e-15!3;UBERON:0001017!5.16e-15!82;UBERON:0002298!6.45e-15!8;UBERON:0005743!3.78e-14!86;UBERON:0000073!1.83e-12!94;UBERON:0001016!1.83e-12!94;UBERON:0000955!2.13e-12!69;UBERON:0006238!2.13e-12!69;UBERON:0001049!1.54e-11!57;UBERON:0005068!1.54e-11!57;UBERON:0006241!1.54e-11!57;UBERON:0007135!1.54e-11!57;UBERON:0003076!3.97e-11!15;UBERON:0003057!3.97e-11!15;UBERON:0004733!7.17e-10!12;UBERON:0002028!7.17e-10!12;UBERON:0007277!7.17e-10!12;UBERON:0002616!2.65e-09!59;UBERON:0004732!4.30e-09!13;UBERON:0000033!7.91e-09!123;UBERON:0000153!3.00e-08!129;UBERON:0007811!3.00e-08!129;UBERON:0004121!5.38e-08!169;UBERON:0000924!1.03e-07!173;UBERON:0006601!1.03e-07!173;UBERON:0000988!3.45e-07!3;UBERON:0003075!7.88e-07!86;UBERON:0007284!7.88e-07!86;UBERON:0001831!9.91e-07!1;UBERON:0001567!9.91e-07!1;UBERON:0008801!9.91e-07!1|ontology_enrichment_uberon_v019=UBERON:0001831;7.48e-30;1!UBERON:0001567;7.48e-30;1!UBERON:0001044;7.13e-20;6!UBERON:0003293;7.13e-20;6!UBERON:0003294;7.13e-20;6!UBERON:0010047;7.13e-20;6!UBERON:0003408;7.13e-20;6!UBERON:0000167;7.13e-20;6!UBERON:0001829;1.15e-15;2!UBERON:0004089;1.15e-15;2!UBERON:0001041;4.21e-09;14!UBERON:0000161;6.01e-07;19!UBERON:0000166;6.01e-07;19|ontology_enrichment_uberon_v019_2=UBERON:0001831,7.48e-30,1;UBERON:0001567,7.48e-30,1;UBERON:0008801,7.48e-30,1;UBERON:0001044,7.13e-20,6;UBERON:0003293,7.13e-20,6;UBERON:0003294,7.13e-20,6;UBERON:0010047,7.13e-20,6;UBERON:0000167,7.13e-20,6;UBERON:0001829,1.15e-15,2;UBERON:0004089,1.15e-15,2;UBERON:0003408,2.37e-12,10|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71741592278634,0.547497700291537,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0.521482918420201,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.330037999682352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.05931470284398,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,1.22722419002586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274083849293502,0.19871461170299,0,0,0.160317640503067,0,0,0,0,0,0,0.372757606696298,0,0,0,0,0.577901179803038,0,0,0,0,0,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5085370753095,0,0,0,0,0,0.170388021785422,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.221858103073705,0.124192805882767,0,2.12466693535581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397832444232549,0,0,0,0,0,0,0,0,0,0,0,44.9571368822889,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0,0,0.444925607568277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29068207646083,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,3.21397089490184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr9:3971860..3971870,+}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C70 | |||
|description=CAGE_peak_at_chr9:3971860..3971870,+ | |||
|id=chr9:3971860..3971870,+ | |||
|ontology_enrichment_celltype=CL:0002605!3.28e-16!3;CL:0000128!4.20e-12!7;CL:0000126!4.20e-12!7;CL:0000127!4.20e-12!7;CL:0002453!4.20e-12!7;CL:0002319!5.89e-11!25;CL:0000243!1.70e-10!15;CL:0000125!1.70e-10!15;CL:0000030!1.70e-10!15;CL:0000339!1.70e-10!15;CL:0000095!2.53e-09!17;CL:0000123!2.53e-09!17;CL:0000062!3.22e-07!11;CL:0000375!3.22e-07!11;CL:0000335!3.22e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000128;5.13e-17;7!CL:0000126;5.13e-17;7!CL:0000127;5.13e-17;7!CL:0000243;1.30e-15;15!CL:0000125;1.30e-15;15!CL:0000095;4.74e-14;17!CL:0002605;1.09e-10;3!CL:0002319;4.19e-10;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000128,5.13e-17,7;CL:0000126,5.13e-17,7;CL:0000127,5.13e-17,7;CL:0002453,5.13e-17,7;CL:0000243,1.30e-15,15;CL:0000125,1.30e-15,15;CL:0000030,1.30e-15,15;CL:0000339,1.30e-15,15;CL:0000095,4.74e-14,17;CL:0000123,4.74e-14,17;CL:0002605,9.90e-11,3;CL:0002319,4.19e-10,25 | |||
|ontology_enrichment_development_v019=UBERON:0008801;7.48e-30;1!CL:0000339;1.30e-15;15!UBERON:0006238;2.98e-11;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3093;2.13e-10;11 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,2.24e-10,11 | |||
|ontology_enrichment_uberon=UBERON:0001896!2.31e-15!3;UBERON:0005290!2.31e-15!3;UBERON:0010096!2.31e-15!3;UBERON:0001017!5.16e-15!82;UBERON:0002298!6.45e-15!8;UBERON:0005743!3.78e-14!86;UBERON:0000073!1.83e-12!94;UBERON:0001016!1.83e-12!94;UBERON:0000955!2.13e-12!69;UBERON:0006238!2.13e-12!69;UBERON:0001049!1.54e-11!57;UBERON:0005068!1.54e-11!57;UBERON:0006241!1.54e-11!57;UBERON:0007135!1.54e-11!57;UBERON:0003076!3.97e-11!15;UBERON:0003057!3.97e-11!15;UBERON:0004733!7.17e-10!12;UBERON:0002028!7.17e-10!12;UBERON:0007277!7.17e-10!12;UBERON:0002616!2.65e-09!59;UBERON:0004732!4.30e-09!13;UBERON:0000033!7.91e-09!123;UBERON:0000153!3.00e-08!129;UBERON:0007811!3.00e-08!129;UBERON:0004121!5.38e-08!169;UBERON:0000924!1.03e-07!173;UBERON:0006601!1.03e-07!173;UBERON:0000988!3.45e-07!3;UBERON:0003075!7.88e-07!86;UBERON:0007284!7.88e-07!86;UBERON:0001831!9.91e-07!1;UBERON:0001567!9.91e-07!1;UBERON:0008801!9.91e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0001831;7.48e-30;1!UBERON:0001567;7.48e-30;1!UBERON:0001044;7.13e-20;6!UBERON:0003293;7.13e-20;6!UBERON:0003294;7.13e-20;6!UBERON:0010047;7.13e-20;6!UBERON:0003408;7.13e-20;6!UBERON:0000167;7.13e-20;6!UBERON:0001829;1.15e-15;2!UBERON:0004089;1.15e-15;2!UBERON:0001041;4.21e-09;14!UBERON:0000161;6.01e-07;19!UBERON:0000166;6.01e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001831,7.48e-30,1;UBERON:0001567,7.48e-30,1;UBERON:0008801,7.48e-30,1;UBERON:0001044,7.13e-20,6;UBERON:0003293,7.13e-20,6;UBERON:0003294,7.13e-20,6;UBERON:0010047,7.13e-20,6;UBERON:0000167,7.13e-20,6;UBERON:0001829,1.15e-15,2;UBERON:0004089,1.15e-15,2;UBERON:0003408,2.37e-12,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71741592278634,0.547497700291537,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0.521482918420201,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.330037999682352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.05931470284398,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,1.22722419002586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274083849293502,0.19871461170299,0,0,0.160317640503067,0,0,0,0,0,0,0.372757606696298,0,0,0,0,0.577901179803038,0,0,0,0,0,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5085370753095,0,0,0,0,0,0.170388021785422,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.221858103073705,0.124192805882767,0,2.12466693535581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397832444232549,0,0,0,0,0,0,0,0,0,0,0,44.9571368822889,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0,0,0.444925607568277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29068207646083,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,3.21397089490184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr9:3971860..3971870,+ | |||
}} |
Revision as of 09:04, 14 September 2013
Short description: | p@chr9:3971860..3971870, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr9:3971860..3971870, + |
Coexpression cluster: | C70_parotid_submaxillary_salivary_throat_trachea_aorta_tongue |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte | 5.13e-17 | 7 |
macroglial cell | 5.13e-17 | 7 |
astrocyte | 5.13e-17 | 7 |
oligodendrocyte precursor cell | 5.13e-17 | 7 |
glial cell (sensu Vertebrata) | 1.30e-15 | 15 |
glial cell | 1.30e-15 | 15 |
glioblast | 1.30e-15 | 15 |
glioblast (sensu Vertebrata) | 1.30e-15 | 15 |
neuron associated cell | 4.74e-14 | 17 |
neuron associated cell (sensu Vertebrata) | 4.74e-14 | 17 |
astrocyte of the cerebral cortex | 9.90e-11 | 3 |
neural cell | 4.19e-10 | 25 |
Ontology term | p-value | n |
---|---|---|
parotid gland | 7.48e-30 | 1 |
cheek | 7.48e-30 | 1 |
parotid gland primordium | 7.48e-30 | 1 |
saliva-secreting gland | 7.13e-20 | 6 |
gland of oral region | 7.13e-20 | 6 |
gland of foregut | 7.13e-20 | 6 |
oral gland | 7.13e-20 | 6 |
oral cavity | 7.13e-20 | 6 |
major salivary gland | 1.15e-15 | 2 |
midface | 1.15e-15 | 2 |
gland of gut | 2.37e-12 | 10 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 2.24e-10 | 11 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.