FFCP PHASE1:Hg19::chr17:39767475..39767486,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1778 | |||
|description=CAGE_peak_at_chr17:39767475..39767486,- | |||
|id=chr17:39767475..39767486,- | |||
|ontology_enrichment_celltype=CL:0002076!3.07e-32!43;CL:0002368!3.19e-26!13;CL:0002159!2.28e-22!13;CL:0000223!4.89e-22!59;CL:0000622!4.25e-19!5;CL:0000154!7.30e-16!6;CL:0002251!2.08e-15!21;CL:0002202!1.60e-14!9;CL:0002632!1.60e-14!9;CL:0000066!6.95e-14!254;CL:0002328!2.56e-12!3;CL:0002623!2.97e-12!3;CL:0000362!7.15e-12!8;CL:0000068!1.51e-11!3;CL:0000069!1.51e-11!3;CL:0000307!1.51e-11!3;CL:0000377!1.51e-11!3;CL:0000150!1.84e-10!9;CL:0000240!2.51e-10!6;CL:0000311!2.51e-10!6;CL:0000079!2.51e-10!6;CL:0000237!2.51e-10!6;CL:0000036!2.51e-10!6;CL:0000357!2.51e-10!6;CL:0000114!2.51e-10!6;CL:0002077!1.21e-09!33;CL:0000575!4.42e-09!2;CL:0000317!1.44e-08!2;CL:1000448!1.44e-08!2;CL:0002308!1.44e-08!2;CL:0002140!1.44e-08!2;CL:0000312!1.46e-07!5;CL:0000220!1.55e-07!246;CL:0002321!2.03e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:0000575;1.53e-20;2!CL:0000622;8.58e-18;5!CL:0002159;3.87e-17;14!CL:0000154;6.26e-15;6!CL:0002076;1.78e-14;42!CL:0002623;1.13e-13;3!CL:0002328;1.32e-13;3!CL:0002368;8.26e-12;13!CL:0000244;9.29e-11;4!CL:0000731;9.29e-11;4!CL:0002252;1.10e-10;1!CL:0000362;3.69e-10;9!CL:0000150;3.87e-10;9!CL:0002202;5.20e-10;9!CL:0002632;5.20e-10;9!CL:0002077;6.33e-09;34!CL:0000312;1.37e-08;5!CL:0002251;9.29e-08;20!CL:0000240;2.69e-07;6!CL:0000311;2.69e-07;6!CL:0000079;2.69e-07;6!CL:0000237;2.69e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000575,1.69e-20,2;CL:0000622,7.03e-18,5;CL:0002159,3.27e-17,14;CL:0002076,6.17e-17,42;CL:0000154,5.30e-15,6;CL:0002623,9.60e-14,3;CL:0002328,1.02e-13,3;CL:0000223,6.20e-12,58;CL:0002368,9.53e-12,13;CL:0000244,9.07e-11,4;CL:0000731,9.07e-11,4;CL:0002252,1.33e-10,1;CL:0000362,3.06e-10,9;CL:0000150,3.47e-10,9;CL:0002202,5.20e-10,9;CL:0002632,5.20e-10,9;CL:0002077,8.57e-10,34;CL:0000066,2.03e-09,253;CL:0000312,1.13e-08,5;CL:0002251,9.21e-08,20;CL:0000240,2.30e-07,6;CL:0000311,2.30e-07,6;CL:0000079,2.30e-07,6;CL:0000237,2.30e-07,6;CL:0000036,2.30e-07,6;CL:0000357,2.30e-07,6;CL:0000114,2.30e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000223;2.05e-08;58!CL:0000357;2.69e-07;6!CL:0000114;2.69e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3151;1.10e-10;1!DOID:3149;1.10e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,1.21e-10,1;DOID:3149,1.21e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0001004!9.32e-19!72;UBERON:0000166!1.68e-15!21;UBERON:0000065!1.54e-13!53;UBERON:0000165!1.80e-13!28;UBERON:0000930!1.80e-13!28;UBERON:0004119!5.03e-13!169;UBERON:0000925!5.03e-13!169;UBERON:0006595!5.03e-13!169;UBERON:0004815!2.56e-12!3;UBERON:0002031!2.56e-12!3;UBERON:0003102!5.10e-12!95;UBERON:0007196!5.50e-12!14;UBERON:0001558!5.50e-12!14;UBERON:0001723!7.00e-12!3;UBERON:0001033!7.00e-12!3;UBERON:0010056!7.00e-12!3;UBERON:0000161!1.76e-10!35;UBERON:0001444!4.32e-10!48;UBERON:0002185!2.44e-09!4;UBERON:0000078!3.24e-09!18;UBERON:0000072!8.73e-09!46;UBERON:0002419!1.44e-08!2;UBERON:0007771!1.44e-08!2;UBERON:0003297!1.44e-08!2;UBERON:0001821!1.44e-08!2;UBERON:0003487!1.44e-08!2;UBERON:0001820!1.44e-08!2;UBERON:0005089!1.44e-08!2;UBERON:0005088!1.44e-08!2;UBERON:0003126!2.81e-08!7;UBERON:0001005!2.81e-08!7;UBERON:0001041!8.53e-08!98;UBERON:0000077!2.26e-07!130;UBERON:0005178!3.81e-07!34;UBERON:0002224!3.81e-07!34;UBERON:0005181!6.76e-07!35;UBERON:0001007!8.74e-07!155;UBERON:0001555!8.74e-07!155;UBERON:0007026!8.74e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0001723;8.43e-14;3!UBERON:0001033;8.43e-14;3!UBERON:0004815;1.32e-13;3!UBERON:0002031;1.32e-13;3!UBERON:0000964;9.51e-11;4!UBERON:0010409;9.51e-11;4!UBERON:0000365;8.83e-09;5!UBERON:0002185;1.60e-08;5!UBERON:0000165;2.17e-08;28!UBERON:0000486;8.68e-08;12!UBERON:0005910;1.87e-07;6!UBERON:0001044;2.82e-07;6!UBERON:0003293;2.82e-07;6!UBERON:0003294;2.82e-07;6!UBERON:0010047;2.82e-07;6!UBERON:0003408;2.82e-07;6!UBERON:0000167;2.82e-07;6!UBERON:0000020;6.05e-07;23 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001723,7.92e-14,3;UBERON:0001033,7.92e-14,3;UBERON:0010056,7.92e-14,3;UBERON:0004815,1.02e-13,3;UBERON:0002031,1.02e-13,3;UBERON:0003102,4.76e-12,99;UBERON:0000166,9.48e-11,22;UBERON:0000964,9.99e-11,4;UBERON:0010409,9.99e-11,4;UBERON:0004348,9.99e-11,4;UBERON:0005427,9.99e-11,4;UBERON:0004119,2.79e-09,160;UBERON:0000925,2.79e-09,160;UBERON:0006595,2.79e-09,160;UBERON:0000161,3.58e-09,36;UBERON:0001004,4.11e-09,74;UBERON:0001444,6.84e-09,49;UBERON:0000365,8.67e-09,5;UBERON:0002185,1.37e-08,5;UBERON:0000165,4.05e-08,29;UBERON:0000930,4.05e-08,29;UBERON:0000033,1.09e-07,56;UBERON:0005910,1.84e-07,6;UBERON:0001044,2.61e-07,6;UBERON:0003293,2.61e-07,6;UBERON:0003294,2.61e-07,6;UBERON:0010047,2.61e-07,6;UBERON:0000167,2.61e-07,6;UBERON:0000153,7.16e-07,62;UBERON:0007811,7.16e-07,62 | |||
|phase1_expression=0,0.214100523890983,0,0,0.446961094427288,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,1.50602959389125,2.58827807116751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18577172975525,13.7190243830239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,1.35282597214308,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269662616320329,0,0,0,0,0,0,0,0,0,0,0,0,1.86575485194663,5.62008766288098,0.703702806881416,0.462942225792648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503946384596579,0.708875486211932,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,0,1.20956117331872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.90607417019222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,2.60024098414608,0,0,0,0,0,0,0,0,0,0.495854746082934,0.384380134730212,0.127612712494584,1.0115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0,0,0,0,0.384888450902048,0.670302275535787,1.08890984861323,0,0,3.36942951335251,7.09488245658681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0,0.921482106297696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.697118721393016,0.384751292518985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.484945082442097,0,0,0,0,0,0,0,0,0.799238438328521,0,0,0,0,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34173875039706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183428598521679,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45051314914126,3.0729325876911,0.691259661814092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,0,0,0,0,0,0,11.9744211343329,1.36893320434112,0.134704106029175,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr17:39767475..39767486,- | |||
}} |
Revision as of 15:19, 20 January 2014
Short description: | p@chr17:39767475..39767486, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:39767475..39767486, - |
Coexpression cluster: | C1778_tongue_Corneal_Urothelial_salivary_Esophageal_Sebocyte_Keratinocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
corneal epithelial cell | 1.69e-20 | 2 |
acinar cell | 7.03e-18 | 5 |
general ecto-epithelial cell | 3.27e-17 | 14 |
endo-epithelial cell | 6.17e-17 | 42 |
protein secreting cell | 5.30e-15 | 6 |
acinar cell of salivary gland | 9.60e-14 | 3 |
bronchial epithelial cell | 1.02e-13 | 3 |
endodermal cell | 6.20e-12 | 58 |
respiratory epithelial cell | 9.53e-12 | 13 |
transitional epithelial cell | 9.07e-11 | 4 |
urothelial cell | 9.07e-11 | 4 |
epithelial cell of esophagus | 1.33e-10 | 1 |
epidermal cell | 3.06e-10 | 9 |
glandular epithelial cell | 3.47e-10 | 9 |
epithelial cell of tracheobronchial tree | 5.20e-10 | 9 |
epithelial cell of lower respiratory tract | 5.20e-10 | 9 |
ecto-epithelial cell | 8.57e-10 | 34 |
epithelial cell | 2.03e-09 | 253 |
keratinocyte | 1.13e-08 | 5 |
epithelial cell of alimentary canal | 9.21e-08 | 20 |
stratified squamous epithelial cell | 2.30e-07 | 6 |
keratin accumulating cell | 2.30e-07 | 6 |
stratified epithelial cell | 2.30e-07 | 6 |
keratinizing barrier epithelial cell | 2.30e-07 | 6 |
epithelial fate stem cell | 2.30e-07 | 6 |
stratified epithelial stem cell | 2.30e-07 | 6 |
surface ectodermal cell | 2.30e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
tongue | 7.92e-14 | 3 |
gustatory system | 7.92e-14 | 3 |
future tongue | 7.92e-14 | 3 |
lower respiratory tract epithelium | 1.02e-13 | 3 |
epithelium of bronchus | 1.02e-13 | 3 |
surface structure | 4.76e-12 | 99 |
oral opening | 9.48e-11 | 22 |
cornea | 9.99e-11 | 4 |
eye surface | 9.99e-11 | 4 |
optic eminence | 9.99e-11 | 4 |
corneal primordium | 9.99e-11 | 4 |
endoderm-derived structure | 2.79e-09 | 160 |
endoderm | 2.79e-09 | 160 |
presumptive endoderm | 2.79e-09 | 160 |
orifice | 3.58e-09 | 36 |
respiratory system | 4.11e-09 | 74 |
subdivision of head | 6.84e-09 | 49 |
urothelium | 8.67e-09 | 5 |
bronchus | 1.37e-08 | 5 |
mouth | 4.05e-08 | 29 |
stomodeum | 4.05e-08 | 29 |
head | 1.09e-07 | 56 |
transitional epithelium | 1.84e-07 | 6 |
saliva-secreting gland | 2.61e-07 | 6 |
gland of oral region | 2.61e-07 | 6 |
gland of foregut | 2.61e-07 | 6 |
oral gland | 2.61e-07 | 6 |
oral cavity | 2.61e-07 | 6 |
anterior region of body | 7.16e-07 | 62 |
craniocervical region | 7.16e-07 | 62 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 1.21e-10 | 1 |
keratoacanthoma | 1.21e-10 | 1 |