FFCP PHASE1:Hg19::chr4:16888839..16888848,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr4:16888839..16888848,- | |||
|id=chr4:16888839..16888848,- | |||
|ontology_enrichment_celltype=CL:0002139!1.22e-09!24;CL:0000115!2.96e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:0002139;6.75e-13;24!CL:0002618;4.61e-12;3!CL:0000071;1.88e-11;18!CL:0002545;2.02e-08;2!CL:0000115;2.11e-08;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,5.98e-13,24;CL:0002618,4.56e-12,3;CL:0000071,1.66e-11,18;CL:0002546,1.66e-11,18;CL:0000115,1.03e-09,36;CL:0002545,1.99e-08,2;CL:0002078,2.56e-07,45 | |||
|ontology_enrichment_development_v019=CL:0002546;1.88e-11;18!UBERON:0005062;8.34e-09;4!UBERON:0007284;8.34e-09;4!UBERON:0007297;6.41e-08;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.93e-21!115;UBERON:0002020!2.23e-18!34;UBERON:0003528!2.23e-18!34;UBERON:0001893!7.60e-18!34;UBERON:0002791!1.21e-17!33;UBERON:0001869!3.01e-17!32;UBERON:0002780!2.36e-16!41;UBERON:0001890!2.36e-16!41;UBERON:0006240!2.36e-16!41;UBERON:0003080!1.13e-15!42;UBERON:0000956!1.59e-15!25;UBERON:0000203!1.59e-15!25;UBERON:0002619!5.07e-14!22;UBERON:0001950!1.40e-12!20;UBERON:0001049!6.14e-12!57;UBERON:0005068!6.14e-12!57;UBERON:0006241!6.14e-12!57;UBERON:0007135!6.14e-12!57;UBERON:0002346!1.43e-10!90;UBERON:0002616!2.30e-10!59;UBERON:0001017!2.67e-09!82;UBERON:0003056!2.70e-09!61;UBERON:0000073!8.79e-09!94;UBERON:0001016!8.79e-09!94;UBERON:0000955!9.97e-09!69;UBERON:0006238!9.97e-09!69;UBERON:0005743!1.01e-08!86;UBERON:0003075!1.28e-08!86;UBERON:0007284!1.28e-08!86;UBERON:0004111!7.54e-08!241;UBERON:0000477!1.18e-07!286;UBERON:0001871!8.65e-07!7;UBERON:0000025!9.84e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0005904;2.68e-14;4!UBERON:0002050;4.38e-12;5!UBERON:0005423;4.38e-12;5!UBERON:0001950;9.85e-12;20!UBERON:0000487;1.28e-11;22!UBERON:0003978;1.31e-11;3!UBERON:0000946;1.31e-11;3!UBERON:0004638;1.88e-11;18!UBERON:0001986;1.88e-11;18!UBERON:0004852;1.88e-11;18!UBERON:0000956;2.75e-11;25!UBERON:0000203;2.75e-11;25!UBERON:0006947;7.11e-11;3!UBERON:0004054;7.11e-11;3!UBERON:0002619;1.44e-10;22!UBERON:0006914;5.12e-10;25!UBERON:0002346;3.15e-09;4!UBERON:0000923;3.15e-09;4!UBERON:0010316;3.15e-09;4!UBERON:0005291;3.15e-09;4!UBERON:0005800;2.02e-08;2!UBERON:0001515;2.02e-08;2!UBERON:0002133;3.65e-08;2!UBERON:0002702;6.41e-08;2!UBERON:0000490;7.33e-08;33!UBERON:0002791;9.50e-08;32!UBERON:0001869;1.12e-07;32!UBERON:0003135;1.17e-07;11!UBERON:0002066;2.23e-07;5!UBERON:0003528;8.16e-07;34!UBERON:0002020;8.16e-07;34!UBERON:0002021;9.07e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005904,4.16e-14,4;UBERON:0003978,7.04e-12,3;UBERON:0009751,7.04e-12,3;UBERON:0000946,7.04e-12,3;UBERON:0002523,7.04e-12,3;UBERON:0005983,7.04e-12,3;UBERON:0002165,7.04e-12,3;UBERON:0002062,7.04e-12,3;UBERON:0007280,7.04e-12,3;UBERON:0001950,8.13e-12,20;UBERON:0000487,1.17e-11,22;UBERON:0004638,1.66e-11,18;UBERON:0001986,1.66e-11,18;UBERON:0004852,1.66e-11,18;UBERON:0000956,2.59e-11,25;UBERON:0000203,2.59e-11,25;UBERON:0006947,1.04e-10,3;UBERON:0004054,1.04e-10,3;UBERON:0002619,1.21e-10,22;UBERON:0006914,4.72e-10,25;UBERON:0002791,1.69e-08,32;UBERON:0001869,1.69e-08,32;UBERON:0005800,1.99e-08,2;UBERON:0001515,1.99e-08,2;UBERON:0002133,2.14e-08,2;UBERON:0002702,6.00e-08,2;UBERON:0003528,6.63e-08,34;UBERON:0002020,6.63e-08,34;UBERON:0001893,6.63e-08,34;UBERON:0004876,9.05e-08,11;UBERON:0003135,1.13e-07,11;UBERON:0002346,1.15e-07,86;UBERON:0002066,2.21e-07,5;UBERON:0002021,9.38e-07,5 | |||
|phase1_expression=0,0,0,1.0007329835313,0,0.872338524100369,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0.286235987131057,1.09499540058307,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0,0.189069634328136,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0.198762407366705,1.72046919021225,0.694281003215189,0,0,1.10047216776027,0,0.775250277507987,0.71153252537342,0.66944122552934,1.61131726843659,0.760272105718513,0,3.30896772311282,2.43042584364528,4.37568668591991,7.63399866928977,2.47745257063309,0,0,0.366403487860815,0,0,0,0.496971951695318,0.25326102332916,0,0.286836620748814,0.354668382198357,0,0,0,0.622422070799533,0.134710672069688,0,0,0,0,0,0.570471821544449,0,0,0.161872944368132,0,0,0.368502951935304,0,0,0,0,0,0.168336113954066,0.750711119231785,0,0,0.612975591598039,0,0,0.179389635688862,0.213557388818567,0.211931901159562,0.600182192168805,0.309157587715317,0.257640540045629,0.18611685633159,0.337552664482532,0.292311015483596,0.757301322732344,0.0920498986422993,0.969876340912871,0.355009592516614,0.201504196455281,0.339121184620975,0,0,0,0.243947412259191,0,0.232387885739037,0.10366105501537,0.252320850875628,2.55484151353081,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0.134831308160164,0,0,0.738155454624648,0,0,0,0,0,2.36315962672562,0,0,0,0,0,0,0,0,0,1.44331342025273,0,0,0.577465791044295,1.38895653772983,3.04406643575357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0.12624243342638,0.126995788584338,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0,0.129271715757778,0,0,0.26593811658487,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0.871533458600294,0.499864955910285,0,0,2.10833939483032,0,1.14861935834114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,1.24782516918484,1.07057393278297,1.10391690523754,0.702848489956279,0,0,0,0,0,0.60818530127658,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0.160853921143607,0,0.154209693802656,0.177561725313127,0.328508624055237,0,0.116210378459959,0,0,0,0,0.546273504020151,0,0,0,0,0,0,2.27466768141793,0.850468526382578,0.647747748306418,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.082509499920588,0,0,3.21367859688319,0.096670718292122,0.308097234229289,0.307007349452259,0.137836572484531,0,0.435050081742686,0.170453254832202,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.359744915166629,0,0.117812402345686,0.202182481573316,0,0,0,0.243713489631284,0,0.9554993798559,0.707027159768564,0,0,0,0,0.578775534266688,0,0,0.30982349809975,0,0,0,0,0,0.211107635297664,0.658589785919804,0,0,0.0962221127255121,0.670302275535787,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0.79312517629427,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0.66614393599564,0,0,0.586032717087576,0,0,0,0,0,0,0.994147647766298,0.562677665642051,0,0,0,0.796991953004279,0.552567831062295,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,1.99613798001194,0,0,0,0,0,0,0,9.03974301488088,0,0.885741385813839,0.482385754501632,0,0,0,0.438770794307945,0,0,1.00035336054936,0,0,0,0,0,0,0,0,1.72678282034527,0,0,0,0,0.189753732724185,0,0,0,0,0,0,0.265372693510018,0.611030144933625,0,0.123563938946503,0,0.134802265961354,2.40773294189637,0,0,0,0,1.57833761139756,1.20990716048664,0.91821828489147,0.442306057399416,0.150323419414493,0,0,0,0,0,0,0,0,0,0,1.04836000945218,0,0,0,0,0.193978032976839,0,0,0.137041924646751,0.19871461170299,0.443175571691151,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0.273810757783986,0,0,0,1.95497680890578,3.89572720819862,5.74298419661451,0,0.429226048136571,0.223171457441873,0.268733889946905,0.360299883542404,0,0,0,0,0,0,0.795229689809303,0.953423842781029,1.92903778158023,1.37539436597234,1.66176135211674,0,0,0.121499113316049,0,0.0788057072991982,0.104909176269996,0,0,0,0,0.662091970365432,0,0,0.864221491201268,0,0,0.082092520749339,1.02232813071253,0,0.146552233678082,0,0.517131825446202,0.26446520348538,0,0,0.747511887973863,0.628817220398664,5.38510771951354,0,0,0,0,0,0,0,0,0.157054096250234,2.65820453990096,0.366078794705889,1.251909307065,0,0,0.0620964029413835,0,0,0,0,0,0,0,0.298509605773748,0.467426619694449,0.554805861502613,0,0.251567901752575,0,0,2.87338755150154,0.15543720058278,0,0.477890301491107,0,0.310525913752519,0.414706207840855,0,0.521745061811734,0.150257608997218,0.380805212168795,0,0.363697318405119,0.107410557042488,0,0,0,0.686791410365586,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.90342715918635,0,0,0,0,0,0,0,0,0,0,0.368211900503681,0,0,0,0,0.629063767423586,0.109209638192014,0.33946505990805,3.82634856183029,5.7010451559141,0.558644917973244,0.636008701306837,0,0,0,0.3062454773532,0.256916900385838,0,1.91560630868582,1.02558182120378,3.27693205088234,0.138314504928436,0.484426936895553,0,0,0,0,0,0,0.690359926060101,0,0.0752103283492573,0,0,0,0,0,0.135075169236789,0.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| |||
|short_description=p@chr4:16888839..16888848,- | |||
}} |
Revision as of 00:22, 22 January 2014
Short description: | p@chr4:16888839..16888848, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:16888839..16888848, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 5.98e-13 | 24 |
endothelial cell of umbilical vein | 4.56e-12 | 3 |
blood vessel endothelial cell | 1.66e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.66e-11 | 18 |
endothelial cell | 1.03e-09 | 36 |
thoracic aorta endothelial cell | 1.99e-08 | 2 |
meso-epithelial cell | 2.56e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
duct of male reproductive system | 4.16e-14 | 4 |
valve | 7.04e-12 | 3 |
cardiac mesenchyme | 7.04e-12 | 3 |
cardial valve | 7.04e-12 | 3 |
tunica intima | 7.04e-12 | 3 |
heart layer | 7.04e-12 | 3 |
endocardium | 7.04e-12 | 3 |
endocardial cushion | 7.04e-12 | 3 |
presumptive endocardium | 7.04e-12 | 3 |
neocortex | 8.13e-12 | 20 |
simple squamous epithelium | 1.17e-11 | 22 |
blood vessel endothelium | 1.66e-11 | 18 |
endothelium | 1.66e-11 | 18 |
cardiovascular system endothelium | 1.66e-11 | 18 |
cerebral cortex | 2.59e-11 | 25 |
pallium | 2.59e-11 | 25 |
male genital duct | 1.04e-10 | 3 |
internal male genitalia | 1.04e-10 | 3 |
regional part of cerebral cortex | 1.21e-10 | 22 |
squamous epithelium | 4.72e-10 | 25 |
regional part of telencephalon | 1.69e-08 | 32 |
cerebral hemisphere | 1.69e-08 | 32 |
segment of aorta | 1.99e-08 | 2 |
thoracic aorta | 1.99e-08 | 2 |
atrioventricular valve | 2.14e-08 | 2 |
middle frontal gyrus | 6.00e-08 | 2 |
brain grey matter | 6.63e-08 | 34 |
gray matter | 6.63e-08 | 34 |
telencephalon | 6.63e-08 | 34 |
urogenital ridge | 9.05e-08 | 11 |
male reproductive organ | 1.13e-07 | 11 |
neurectoderm | 1.15e-07 | 86 |
umbilical vein | 2.21e-07 | 5 |
occipital lobe | 9.38e-07 | 5 |