CL:0000234: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=phagocyte | |name=phagocyte | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:32, 12 September 2014
| Name: | phagocyte | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Any cell capable of ingesting particulate matter via phagocytosis." [GOC:add, ISBN:0721601464] | ||
| Xrefs: |
|
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000219(motile cell),CL:0000325(stuff accumulating cell),CL:0000473(defensive cell) |
|---|
Children
| is a: | CL:0000235 (macrophage),CL:0000860 (classical monocyte) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11232-116C8 (Macrophage - monocyte derived, donor1)
- 11313-117C8 (Macrophage - monocyte derived, donor2)
- 11389-118C3 (Macrophage - monocyte derived, donor3)
- 11501-119F7
- 11641-122D3 (Mouse Microglia, donor3)
- 11662-122F6
- 11718-123C8 (Mouse Microglia, donor1)
- 11736-123E8 (Mouse Microglia, donor2)
- 11788-124B6 (CD14+CD16- Monocytes, donor1)
- 11799-124C8 (CD14+CD16- Monocytes, donor2)
... further results Mouse (Mus musculus)
- 11232-116C8 (Macrophage - monocyte derived, donor1)
- 11313-117C8 (Macrophage - monocyte derived, donor2)
- 11389-118C3 (Macrophage - monocyte derived, donor3)
- 11501-119F7
- 11641-122D3 (Mouse Microglia, donor3)
- 11662-122F6
- 11718-123C8 (Mouse Microglia, donor1)
- 11736-123E8 (Mouse Microglia, donor2)
- 11788-124B6 (CD14+CD16- Monocytes, donor1)
- 11799-124C8 (CD14+CD16- Monocytes, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000234 (phagocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.0e-160 | FFCP PHASE2:Hg19::chrX:37664331..37664352,+#_ef0d6277fa06a47eb00b57b38c76a60c | p@chrX:37664331..37664352, + |
| 3.0e-160 | FFCP PHASE1:Hg19::chrX:37664331..37664352,+#_ef0d6277fa06a47eb00b57b38c76a60c | p@chrX:37664331..37664352, + |
| 1.12e-152 | FFCP PHASE1:Hg19::chr17:72606825..72606838,-#_94a2caeb1e07ad9ef7b268d43c7adc43 | p@chr17:72606825..72606838, - |
| 1.12e-152 | FFCP PHASE2:Hg19::chr17:72606825..72606838,-#_94a2caeb1e07ad9ef7b268d43c7adc43 | p@chr17:72606825..72606838, - |
| 4.58e-152 | FFCP PHASE1:Hg19::chr11:58979924..58979941,-#_81fb6ce1c01983ccda75623f18dabb8b | p4@MPEG1 |
| 4.58e-152 | FFCP PHASE2:Hg19::chr11:58979924..58979941,-#_81fb6ce1c01983ccda75623f18dabb8b | p4@MPEG1 |
| 5.71e-152 | FFCP PHASE1:Hg19::chr8:71452856..71452863,+#_3b673a96577752718359b19c4bc39745 | p@chr8:71452856..71452863, + |
| 5.71e-152 | FFCP PHASE2:Hg19::chr8:71452856..71452863,+#_3b673a96577752718359b19c4bc39745 | p@chr8:71452856..71452863, + |
| 2.22e-151 | FFCP PHASE1:Hg19::chr17:72607351..72607373,-#_844a5d680b5981b40649ce8896ea21fd | p@chr17:72607351..72607373, - |
| 2.22e-151 | FFCP PHASE2:Hg19::chr17:72607351..72607373,-#_844a5d680b5981b40649ce8896ea21fd | p@chr17:72607351..72607373, - |
| 2.51e-151 | FFCP PHASE2:Hg19::chr19:55208119..55208134,+#_7bb64e254b139d1170bfea6d28d13609 | p1@LILRP1 |
| 2.51e-151 | FFCP PHASE1:Hg19::chr19:55208119..55208134,+#_7bb64e254b139d1170bfea6d28d13609 | p1@LILRP1 |
| 6.02e-151 | FFCP PHASE1:Hg19::chr4:185314351..185314392,+#_fcdb331d732e14989ebece6eb78d2458 | p@chr4:185314351..185314392, + |
| 6.02e-151 | FFCP PHASE2:Hg19::chr4:185314351..185314392,+#_fcdb331d732e14989ebece6eb78d2458 | p@chr4:185314351..185314392, + |
| 1.13e-150 | FFCP PHASE1:Hg19::chr7:44661060..44661101,-#_65c3b72e0909343115429fae7015ccc0 | p@chr7:44661060..44661101, - |
| 1.13e-150 | FFCP PHASE2:Hg19::chr7:44661060..44661101,-#_65c3b72e0909343115429fae7015ccc0 | p@chr7:44661060..44661101, - |
| 2.0e-150 | FFCP PHASE1:Hg19::chr17:72628050..72628077,-#_fb31185eb98dcdc705119d05919f0acf | p@chr17:72628050..72628077, - |
| 2.0e-150 | FFCP PHASE2:Hg19::chr17:72628050..72628077,-#_fb31185eb98dcdc705119d05919f0acf | p@chr17:72628050..72628077, - |
| 9.24e-150 | FFCP PHASE1:Hg19::chr14:55249943..55249971,+#_92035a3c61c01821f8a4361f054aab90 | p@chr14:55249943..55249971, + |
| 9.24e-150 | FFCP PHASE2:Hg19::chr14:55249943..55249971,+#_92035a3c61c01821f8a4361f054aab90 | p@chr14:55249943..55249971, + |
| 1.2e-149 | FFCP PHASE2:Hg19::chr7:151503418..151503445,+#_703c5ed030d2abdf2b8bbec1138f6b78 | p1@ENST00000481153 |
| 1.2e-149 | FFCP PHASE1:Hg19::chr7:151503418..151503445,+#_703c5ed030d2abdf2b8bbec1138f6b78 | p1@ENST00000481153 |
| 5.67e-149 | FFCP PHASE2:Hg19::chr17:72607002..72607029,+#_940c173dfa29dfa85df9a9cbade38acc | p@chr17:72607002..72607029, + |
| 5.67e-149 | FFCP PHASE1:Hg19::chr17:72607002..72607029,+#_940c173dfa29dfa85df9a9cbade38acc | p@chr17:72607002..72607029, + |
| 6.94e-148 | FFCP PHASE1:Hg19::chr17:7482481..7482508,-#_08cf4c942ebfac7521e2baeb4ac7caf0 | p@chr17:7482481..7482508, - |
| 6.94e-148 | FFCP PHASE2:Hg19::chr17:7482481..7482508,-#_08cf4c942ebfac7521e2baeb4ac7caf0 | p@chr17:7482481..7482508, - |
| 1.27e-147 | FFCP PHASE2:Hg19::chr8:11755021..11755054,+#_a489bef66c7d32c898d88be7de24d8cc | p@chr8:11755021..11755054, + |
| 1.27e-147 | FFCP PHASE1:Hg19::chr8:11755021..11755054,+#_a489bef66c7d32c898d88be7de24d8cc | p@chr8:11755021..11755054, + |
| 1.17e-146 | FFCP PHASE1:Hg19::chr3:128943968..128943986,+#_cf2e14c310c320b3a4135a6927f01cd8 | p@chr3:128943968..128943986, + |
| 1.17e-146 | FFCP PHASE2:Hg19::chr3:128943968..128943986,+#_cf2e14c310c320b3a4135a6927f01cd8 | p@chr3:128943968..128943986, + |
| 1.84e-146 | FFCP PHASE1:Hg19::chr2:143623608..143623622,-#_3822c7c66fbaf70c4e5836f8b8f51c31 | p@chr2:143623608..143623622, - |
| 1.84e-146 | FFCP PHASE2:Hg19::chr2:143623608..143623622,-#_3822c7c66fbaf70c4e5836f8b8f51c31 | p@chr2:143623608..143623622, - |
| 8.93e-146 | FFCP PHASE1:Hg19::chr19:51625943..51625962,+#_8e7e1f4812236ee0e0906174b5ad7728 | p@chr19:51625943..51625962, + |
| 8.93e-146 | FFCP PHASE2:Hg19::chr19:51625943..51625962,+#_8e7e1f4812236ee0e0906174b5ad7728 | p@chr19:51625943..51625962, + |
| 1.23e-145 | FFCP PHASE1:Hg19::chr1:161188746..161188758,+#_a0cefbdff86ea2dfd4f1b641b10631cf | p@chr1:161188746..161188758, + |
| 1.23e-145 | FFCP PHASE2:Hg19::chr1:161188746..161188758,+#_a0cefbdff86ea2dfd4f1b641b10631cf | p@chr1:161188746..161188758, + |
| 2.49e-145 | FFCP PHASE1:Hg19::chr19:51625924..51625942,+#_b1b6db011bfbeac5cff3aff2ce389879 | p@chr19:51625924..51625942, + |
| 2.49e-145 | FFCP PHASE2:Hg19::chr19:51625924..51625942,+#_b1b6db011bfbeac5cff3aff2ce389879 | p@chr19:51625924..51625942, + |
| 2.76e-145 | FFCP PHASE1:Hg19::chr1:111182849..111182891,+#_e19ddb5c53d581a6b46b628c9fae70fe | p@chr1:111182849..111182891, + |
| 2.76e-145 | FFCP PHASE2:Hg19::chr1:111182849..111182891,+#_e19ddb5c53d581a6b46b628c9fae70fe | p@chr1:111182849..111182891, + |
| 4.97e-145 | FFCP PHASE2:Hg19::chr17:72607152..72607174,-#_925d4ae1e0059d480dd56f31928b61cf | p@chr17:72607152..72607174, - |
| 4.97e-145 | FFCP PHASE1:Hg19::chr17:72607152..72607174,-#_925d4ae1e0059d480dd56f31928b61cf | p@chr17:72607152..72607174, - |
| 5.74e-145 | FFCP PHASE1:Hg19::chr7:77050554..77050601,+#_4066d31d7ac9276101b09ca65a8d60a5 | p@chr7:77050554..77050601, + |
| 5.74e-145 | FFCP PHASE2:Hg19::chr7:77050554..77050601,+#_4066d31d7ac9276101b09ca65a8d60a5 | p@chr7:77050554..77050601, + |
| 8.55e-145 | FFCP PHASE2:Hg19::chr2:145276939..145276960,+#_745b530a6a3548551a84cc50f7115233 | p2@ZEB2-AS1 |
| 8.55e-145 | FFCP PHASE1:Hg19::chr2:145276939..145276960,+#_745b530a6a3548551a84cc50f7115233 | p2@ZEB2-AS1 |
| 9.86e-145 | FFCP PHASE2:Hg19::chr11:68847043..68847057,+#_c62c72fcdd6e034652865fa2c2a992c7 | p@chr11:68847043..68847057, + |
| 9.86e-145 | FFCP PHASE1:Hg19::chr11:68847043..68847057,+#_c62c72fcdd6e034652865fa2c2a992c7 | p@chr11:68847043..68847057, + |
| 1.43e-144 | FFCP PHASE1:Hg19::chr1:161188661..161188679,+#_abaa05b4d566d3f6d67fdbdd5d176152 | p@chr1:161188661..161188679, + |
| 1.43e-144 | FFCP PHASE2:Hg19::chr1:161188661..161188679,+#_abaa05b4d566d3f6d67fdbdd5d176152 | p@chr1:161188661..161188679, + |
| 1.93e-144 | FFCP PHASE1:Hg19::chr5:131280548..131280574,-#_21f22ef6302f1d04f91c8703add34c82 | p1@ENST00000425320 |
| 1.93e-144 | FFCP PHASE2:Hg19::chr5:131280548..131280574,-#_21f22ef6302f1d04f91c8703add34c82 | p1@ENST00000425320 |
| 5.05e-144 | FFCP PHASE1:Hg19::chr19:18288651..18288682,+#_ad42d8c23ff6b66c1770866d5eefbd0a | p5@IFI30 |
| 5.05e-144 | FFCP PHASE2:Hg19::chr19:18288651..18288682,+#_ad42d8c23ff6b66c1770866d5eefbd0a | p5@IFI30 |
| 2.75e-143 | FFCP PHASE2:Hg19::chr1:120593738..120593745,+#_0905f34aa1d89314f3145a791b7c0eda | p@chr1:120593738..120593745, + |
| 2.75e-143 | FFCP PHASE1:Hg19::chr1:120593738..120593745,+#_0905f34aa1d89314f3145a791b7c0eda | p@chr1:120593738..120593745, + |
| 3.2e-143 | FFCP PHASE2:Hg19::chr1:27943424..27943442,-#_a9b4b589d0255068806fa8f947c28052 | p@chr1:27943424..27943442, - |
| 3.2e-143 | FFCP PHASE1:Hg19::chr1:27943424..27943442,-#_a9b4b589d0255068806fa8f947c28052 | p@chr1:27943424..27943442, - |
| 5.48e-143 | FFCP PHASE1:Hg19::chr7:48009999..48010016,+#_46f548382fd45ada24a66bb26cfbd286 | p@chr7:48009999..48010016, + |
| 5.48e-143 | FFCP PHASE2:Hg19::chr7:48009999..48010016,+#_46f548382fd45ada24a66bb26cfbd286 | p@chr7:48009999..48010016, + |
| 9.17e-143 | FFCP PHASE2:Hg19::chr16:82229835..82229848,+#_eae7b083be4b2fe7b01fd85e44840401 | p@chr16:82229835..82229848, + |
| 9.17e-143 | FFCP PHASE1:Hg19::chr16:82229835..82229848,+#_eae7b083be4b2fe7b01fd85e44840401 | p@chr16:82229835..82229848, + |
| 2.09e-142 | FFCP PHASE2:Hg19::chr2:129283966..129283970,+#_f1a6a35fb706c5834489f59b2299eab3 | p@chr2:129283966..129283970, + |
| 2.09e-142 | FFCP PHASE1:Hg19::chr2:129283966..129283970,+#_f1a6a35fb706c5834489f59b2299eab3 | p@chr2:129283966..129283970, + |
| 2.81e-142 | FFCP PHASE2:Hg19::chr15:59469817..59469836,+#_d6bbc7b281487e5c7c9bd7ac78bfdabb | p@chr15:59469817..59469836, + |
| 2.81e-142 | FFCP PHASE1:Hg19::chr15:59469817..59469836,+#_d6bbc7b281487e5c7c9bd7ac78bfdabb | p@chr15:59469817..59469836, + |
| 3.09e-142 | FFCP PHASE1:Hg19::chr2:145429606..145429658,+#_7991bf8865e24dc04d581fb2987e358d | p@chr2:145429606..145429658, + |
| 3.09e-142 | FFCP PHASE2:Hg19::chr2:145429606..145429658,+#_7991bf8865e24dc04d581fb2987e358d | p@chr2:145429606..145429658, + |
| 3.6e-142 | FFCP PHASE2:Hg19::chr10:73648356..73648408,-#_a461cbcf7db050f9608e084d1859e1cb | p@chr10:73648356..73648408, - |
| 3.6e-142 | FFCP PHASE1:Hg19::chr10:73648356..73648408,-#_a461cbcf7db050f9608e084d1859e1cb | p@chr10:73648356..73648408, - |
| 4.15e-142 | FFCP PHASE2:Hg19::chr4:159731607..159731627,+#_862e19e4cf08da19043fde0f3dd66b6d | p@chr4:159731607..159731627, + |
| 4.15e-142 | FFCP PHASE1:Hg19::chr4:159731607..159731627,+#_862e19e4cf08da19043fde0f3dd66b6d | p@chr4:159731607..159731627, + |
| 9.43e-142 | FFCP PHASE1:Hg19::chr8:11754835..11754867,-#_2d531752de6bb2a5dff24eadf4bd4821 | p1@ENST00000525252 |
| 9.43e-142 | FFCP PHASE2:Hg19::chr8:11754835..11754867,-#_2d531752de6bb2a5dff24eadf4bd4821 | p1@ENST00000525252 |
| 1.12e-141 | FFCP PHASE1:Hg19::chr20:2191870..2191909,-#_3d37cb2751102604946efb51d8785d00 | p@chr20:2191870..2191909, - |
| 1.12e-141 | FFCP PHASE2:Hg19::chr20:2191870..2191909,-#_3d37cb2751102604946efb51d8785d00 | p@chr20:2191870..2191909, - |
| 1.17e-141 | FFCP PHASE1:Hg19::chr1:161188022..161188042,+#_e5767a8d8f1d6ab39a0ada5fae743391 | p@chr1:161188022..161188042, + |
| 1.17e-141 | FFCP PHASE2:Hg19::chr1:161188022..161188042,+#_e5767a8d8f1d6ab39a0ada5fae743391 | p@chr1:161188022..161188042, + |
| 3.2e-141 | FFCP PHASE1:Hg19::chr17:72606678..72606702,-#_298a3252b9164472fe7ea30067bde1a7 | p@chr17:72606678..72606702, - |
| 3.2e-141 | FFCP PHASE2:Hg19::chr17:72606678..72606702,-#_298a3252b9164472fe7ea30067bde1a7 | p@chr17:72606678..72606702, - |
| 3.49e-141 | FFCP PHASE1:Hg19::chr22:17717917..17717939,-#_d58d5d97c3098684c75cbbe8bd9f0593 | p@chr22:17717917..17717939, - |
| 3.49e-141 | FFCP PHASE2:Hg19::chr22:17717917..17717939,-#_d58d5d97c3098684c75cbbe8bd9f0593 | p@chr22:17717917..17717939, - |
| 4.64e-141 | FFCP PHASE2:Hg19::chr6:46698996..46699019,+#_d42a47c0be519839efcbc85e10d4a585 | p@chr6:46698996..46699019, + |
| 4.64e-141 | FFCP PHASE1:Hg19::chr6:46698996..46699019,+#_d42a47c0be519839efcbc85e10d4a585 | p@chr6:46698996..46699019, + |
| 5.93e-141 | FFCP PHASE2:Hg19::chr2:143623546..143623573,-#_3c0eca9bc284ebedffbfddbf46d3e24b | p@chr2:143623546..143623573, - |
| 5.93e-141 | FFCP PHASE1:Hg19::chr2:143623546..143623573,-#_3c0eca9bc284ebedffbfddbf46d3e24b | p@chr2:143623546..143623573, - |
| 6.3e-141 | FFCP PHASE2:Hg19::chr12:125197870..125197907,+#_ebb581f60e0ae1b28048a6c4f652fb1c | p@chr12:125197870..125197907, + |
| 6.3e-141 | FFCP PHASE1:Hg19::chr12:125197870..125197907,+#_ebb581f60e0ae1b28048a6c4f652fb1c | p@chr12:125197870..125197907, + |
| 6.36e-141 | FFCP PHASE2:Hg19::chr20:2191845..2191866,-#_682feac869d988ddabdfddca140debec | p@chr20:2191845..2191866, - |
| 6.36e-141 | FFCP PHASE1:Hg19::chr20:2191845..2191866,-#_682feac869d988ddabdfddca140debec | p@chr20:2191845..2191866, - |
| 6.5e-141 | FFCP PHASE2:Hg19::chr2:38358217..38358244,+#_85227248866cc855eb5e47dd701387bb | p1@CYP1B1-AS1 |
| 6.5e-141 | FFCP PHASE1:Hg19::chr2:38358217..38358244,+#_85227248866cc855eb5e47dd701387bb | p1@CYP1B1-AS1 |
| 7.62e-141 | FFCP PHASE1:Hg19::chr5:156534439..156534470,+#_402df730c0b1142f74e5178c3f0ffd0b | p@chr5:156534439..156534470, + |
| 7.62e-141 | FFCP PHASE2:Hg19::chr5:156534439..156534470,+#_402df730c0b1142f74e5178c3f0ffd0b | p@chr5:156534439..156534470, + |
| 1.24e-140 | FFCP PHASE1:Hg19::chr2:145421047..145421067,+#_016a655d778fdc779826b747a2a14faa | p@chr2:145421047..145421067, + |
| 1.24e-140 | FFCP PHASE2:Hg19::chr2:145421047..145421067,+#_016a655d778fdc779826b747a2a14faa | p@chr2:145421047..145421067, + |
| 1.97e-140 | FFCP PHASE1:Hg19::chr9:137300477..137300490,+#_ac5cd495f26599f02083e0a45e97d748 | p@chr9:137300477..137300490, + |
| 1.97e-140 | FFCP PHASE2:Hg19::chr9:137300477..137300490,+#_ac5cd495f26599f02083e0a45e97d748 | p@chr9:137300477..137300490, + |
| 3.85e-140 | FFCP PHASE2:Hg19::chr10:106006943..106006961,+#_a51eac3f6b9ce41562e7888b3f40ad10 | p@chr10:106006943..106006961, + |
| 3.85e-140 | FFCP PHASE1:Hg19::chr10:106006943..106006961,+#_a51eac3f6b9ce41562e7888b3f40ad10 | p@chr10:106006943..106006961, + |
