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DOID:3905: Difference between revisions

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|located_in=
|located_in=
|name=lung carcinoma
|name=lung carcinoma
|namespace=disease_ontology
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=
|part_of=

Latest revision as of 16:51, 12 September 2014

Name:lung carcinoma
Namespace:FANTOM
Definition:"A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https://merck.com/mmpe/sec05/ch062/ch062b.html]
Xrefs:
links:

NCI:C4878
OMIM:211980
SNOMEDCT_2010_1_31:154485001
SNOMEDCT_2010_1_31:187875007
SNOMEDCT_2010_1_31:269561006

UMLS_CUI:C0684249
Synonyms: "cancer of lung" EXACT [NCI2004_11_17:C4878]
"carcinoma OF LUNG" EXACT [MTH:460]
"carcinoma of lung" RELATED []
"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006]
"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
Comments:OMIM mapping confirmed by DO. [SN].

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:1324(lung cancer)



Children


is a:DOID:3908 (non-small cell lung carcinoma),DOID:5409 (lung small cell carcinoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3905 (lung carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.75e-45FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399245..45399258, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399533..45399540, +
9.75e-45FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405393..45405412, +
9.75e-45FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405332..45405343, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399263..45399274, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399245..45399258, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399533..45399540, +
9.75e-45FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405393..45405412, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399263..45399274, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399294..45399301, +
9.75e-45FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:125378873..125378876, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399294..45399301, +
9.75e-45FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:125378873..125378876, +
9.75e-45FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405332..45405343, +
4.35e-40FFCP PHASE1:Hg19::chr6:73785930..73785949,-#_63c78ab1a3b8986f5f523383f41275dcp@chr6:73785930..73785949, -
4.35e-40FFCP PHASE2:Hg19::chr6:73785930..73785949,-#_63c78ab1a3b8986f5f523383f41275dcp@chr6:73785930..73785949, -
2.66e-30FFCP PHASE2:Hg19::chr6:45399724..45399733,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399724..45399733, +
2.66e-30FFCP PHASE1:Hg19::chr5:92526866..92526914,-#_731a82d29cb8eb0e261f77134811de1ep@chr5:92526866..92526914, -
2.66e-30FFCP PHASE2:Hg19::chr6:45399422..45399430,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399422..45399430, +
2.66e-30FFCP PHASE1:Hg19::chr6:73786620..73786627,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786620..73786627, +
2.66e-30FFCP PHASE2:Hg19::chr13:70823810..70823813,+#_731a82d29cb8eb0e261f77134811de1ep@chr13:70823810..70823813, +
2.66e-30FFCP PHASE2:Hg19::chr6:73786593..73786601,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786593..73786601, +
2.66e-30FFCP PHASE2:Hg19::chr5:92526866..92526914,-#_731a82d29cb8eb0e261f77134811de1ep@chr5:92526866..92526914, -
2.66e-30FFCP PHASE2:Hg19::chr6:73786620..73786627,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786620..73786627, +
2.66e-30FFCP PHASE1:Hg19::chr13:70823810..70823813,+#_731a82d29cb8eb0e261f77134811de1ep@chr13:70823810..70823813, +
2.66e-30FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_731a82d29cb8eb0e261f77134811de1ep@chr8:40525350..40525354, -
2.66e-30FFCP PHASE1:Hg19::chr6:45399724..45399733,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399724..45399733, +
2.66e-30FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_731a82d29cb8eb0e261f77134811de1ep@chr8:40525350..40525354, -
2.66e-30FFCP PHASE1:Hg19::chr6:45399422..45399430,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399422..45399430, +
2.66e-30FFCP PHASE1:Hg19::chr6:73786593..73786601,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786593..73786601, +
3.09e-30FFCP PHASE1:Hg19::chr18:10085554..10085562,+#_6ab758267c516e266b3cc84006025e3ap@chr18:10085554..10085562, +
3.09e-30FFCP PHASE2:Hg19::chr18:10085554..10085562,+#_6ab758267c516e266b3cc84006025e3ap@chr18:10085554..10085562, +
3.59e-30FFCP PHASE1:Hg19::chr1:156779602..156779619,-#_b0a10e90ac2aa3a790fb9716f2bbd976p@chr1:156779602..156779619, -
3.59e-30FFCP PHASE2:Hg19::chr1:156779602..156779619,-#_b0a10e90ac2aa3a790fb9716f2bbd976p@chr1:156779602..156779619, -
7.5e-29FFCP PHASE1:Hg19::chr21:37377429..37377443,+#_d0518c616b4f4645db245080ba4c6f03p2@ENST00000457157
7.5e-29FFCP PHASE2:Hg19::chr21:37377429..37377443,+#_d0518c616b4f4645db245080ba4c6f03p2@ENST00000457157
8.14e-26FFCP PHASE1:Hg19::chr4:89282612..89282616,+#_d620c4dda050ed3d00bebc254948b1cep@chr4:89282612..89282616, +
8.14e-26FFCP PHASE2:Hg19::chr4:89282612..89282616,+#_d620c4dda050ed3d00bebc254948b1cep@chr4:89282612..89282616, +
3.17e-25FFCP PHASE2:Hg19::chr14:36982707..36982717,-#_dc0ca4292e777cec68d90532f4c7e584p8@SFTA3
3.17e-25FFCP PHASE1:Hg19::chr14:36982707..36982717,-#_dc0ca4292e777cec68d90532f4c7e584p8@SFTA3
2.62e-23FFCP PHASE2:Hg19::chr17:58979826..58979836,+#_ff13f51a990286586a726a44f2e602cap@chr17:58979826..58979836, +
2.62e-23FFCP PHASE1:Hg19::chr8:57526601..57526612,+#_ff13f51a990286586a726a44f2e602cap@chr8:57526601..57526612, +
2.62e-23FFCP PHASE2:Hg19::chr10:129703377..129703388,+#_ff13f51a990286586a726a44f2e602cap@chr10:129703377..129703388, +
2.62e-23FFCP PHASE1:Hg19::chr8:100549773..100549807,-#_ff13f51a990286586a726a44f2e602cap@chr8:100549773..100549807, -
2.62e-23FFCP PHASE1:Hg19::chr20:2779313..2779314,-#_ff13f51a990286586a726a44f2e602cap16@CPXM1
2.62e-23FFCP PHASE2:Hg19::chr8:98075951..98075959,-#_ff13f51a990286586a726a44f2e602cap@chr8:98075951..98075959, -
2.62e-23FFCP PHASE2:Hg19::chr3:194808375..194808396,+#_ff13f51a990286586a726a44f2e602cap@chr3:194808375..194808396, +
2.62e-23FFCP PHASE1:Hg19::chr13:104517168..104517170,+#_ff13f51a990286586a726a44f2e602cap@chr13:104517168..104517170, +
2.62e-23FFCP PHASE1:Hg19::chr9:97856010..97856019,+#_ff13f51a990286586a726a44f2e602cap@chr9:97856010..97856019, +
2.62e-23FFCP PHASE1:Hg19::chr10:129703363..129703373,+#_ff13f51a990286586a726a44f2e602cap@chr10:129703363..129703373, +
2.62e-23FFCP PHASE1:Hg19::chr8:98015616..98015617,-#_ff13f51a990286586a726a44f2e602cap@chr8:98015616..98015617, -
2.62e-23FFCP PHASE1:Hg19::chr3:189838995..189839000,-#_ff13f51a990286586a726a44f2e602cap31@LEPREL1
2.62e-23FFCP PHASE1:Hg19::chr1:188856567..188856573,-#_ff13f51a990286586a726a44f2e602cap2@ENST00000414765
2.62e-23FFCP PHASE2:Hg19::chr7:7749088..7749127,+#_ff13f51a990286586a726a44f2e602cap@chr7:7749088..7749127, +
2.62e-23FFCP PHASE2:Hg19::chr4:185426203..185426209,-#_ff13f51a990286586a726a44f2e602cap@chr4:185426203..185426209, -
2.62e-23FFCP PHASE2:Hg19::chr2:192805239..192805246,+#_ff13f51a990286586a726a44f2e602cap@chr2:192805239..192805246, +
2.62e-23FFCP PHASE1:Hg19::chr8:98108435..98108438,-#_ff13f51a990286586a726a44f2e602cap@chr8:98108435..98108438, -
2.62e-23FFCP PHASE1:Hg19::chr6:140771120..140771128,+#_ff13f51a990286586a726a44f2e602cap@chr6:140771120..140771128, +
2.62e-23FFCP PHASE2:Hg19::chr6:17845348..17845358,-#_ff13f51a990286586a726a44f2e602cap@chr6:17845348..17845358, -
2.62e-23FFCP PHASE2:Hg19::chr2:97626550..97626562,-#_ff13f51a990286586a726a44f2e602cap@chr2:97626550..97626562, -
2.62e-23FFCP PHASE1:Hg19::chrX:48056224..48056233,-#_ff13f51a990286586a726a44f2e602cap1@SSX5
2.62e-23FFCP PHASE1:Hg19::chr7:79840117..79840122,+#_ff13f51a990286586a726a44f2e602cap@chr7:79840117..79840122, +
2.62e-23FFCP PHASE1:Hg19::chr7:120378742..120378768,-#_ff13f51a990286586a726a44f2e602cap@chr7:120378742..120378768, -
2.62e-23FFCP PHASE1:Hg19::chr3:63805044..63805054,+#_ff13f51a990286586a726a44f2e602cap1@C3orf49
2.62e-23FFCP PHASE1:Hg19::chr17:39140393..39140399,-#_ff13f51a990286586a726a44f2e602cap3@KRT40
2.62e-23FFCP PHASE2:Hg19::chr9:17454025..17454033,+#_ff13f51a990286586a726a44f2e602cap@chr9:17454025..17454033, +
2.62e-23FFCP PHASE1:Hg19::chr15:91143571..91143582,+#_ff13f51a990286586a726a44f2e602cap@chr15:91143571..91143582, +
2.62e-23FFCP PHASE2:Hg19::chr8:73794113..73794122,+#_ff13f51a990286586a726a44f2e602cap@chr8:73794113..73794122, +
2.62e-23FFCP PHASE2:Hg19::chr4:81460545..81460547,-#_ff13f51a990286586a726a44f2e602cap@chr4:81460545..81460547, -
2.62e-23FFCP PHASE2:Hg19::chr2:115929667..115929677,+#_ff13f51a990286586a726a44f2e602cap@chr2:115929667..115929677, +
2.62e-23FFCP PHASE2:Hg19::chr20:2779236..2779242,-#_ff13f51a990286586a726a44f2e602cap12@CPXM1
2.62e-23FFCP PHASE2:Hg19::chr11:41519057..41519065,-#_ff13f51a990286586a726a44f2e602cap@chr11:41519057..41519065, -
2.62e-23FFCP PHASE1:Hg19::chr7:95776211..95776254,-#_ff13f51a990286586a726a44f2e602cap@chr7:95776211..95776254, -
2.62e-23FFCP PHASE1:Hg19::chr11:1643561..1643566,+#_ff13f51a990286586a726a44f2e602cap@chr11:1643561..1643566, +
2.62e-23FFCP PHASE1:Hg19::chr3:86929211..86929219,+#_ff13f51a990286586a726a44f2e602cap@chr3:86929211..86929219, +
2.62e-23FFCP PHASE1:Hg19::chr2:103235329..103235342,+#_ff13f51a990286586a726a44f2e602cap@chr2:103235329..103235342, +
2.62e-23FFCP PHASE2:Hg19::chr9:9763035..9763040,-#_ff13f51a990286586a726a44f2e602cap@chr9:9763035..9763040, -
2.62e-23FFCP PHASE2:Hg19::chr8:98015305..98015315,-#_ff13f51a990286586a726a44f2e602cap@chr8:98015305..98015315, -
2.62e-23FFCP PHASE2:Hg19::chr6:45398505..45398508,+#_ff13f51a990286586a726a44f2e602cap@chr6:45398505..45398508, +
2.62e-23FFCP PHASE2:Hg19::chr3:186548894..186548902,+#_ff13f51a990286586a726a44f2e602cap@chr3:186548894..186548902, +
2.62e-23FFCP PHASE1:Hg19::chr12:84664700..84664710,+#_ff13f51a990286586a726a44f2e602cap1@ENST00000547882
2.62e-23FFCP PHASE2:Hg19::chr1:188856517..188856523,-#_ff13f51a990286586a726a44f2e602cap1@ENST00000414765
2.62e-23FFCP PHASE2:Hg19::chr13:95133382..95133389,-#_ff13f51a990286586a726a44f2e602cap@chr13:95133382..95133389, -
2.62e-23FFCP PHASE1:Hg19::chr8:97961177..97961185,-#_ff13f51a990286586a726a44f2e602cap@chr8:97961177..97961185, -
2.62e-23FFCP PHASE1:Hg19::chr6:39526005..39526014,-#_ff13f51a990286586a726a44f2e602cap@chr6:39526005..39526014, -
2.62e-23FFCP PHASE1:Hg19::chr3:150914094..150914095,+#_ff13f51a990286586a726a44f2e602cap@chr3:150914094..150914095, +
2.62e-23FFCP PHASE1:Hg19::chr1:181360250..181360259,+#_ff13f51a990286586a726a44f2e602cap@chr1:181360250..181360259, +
2.62e-23FFCP PHASE2:Hg19::chr7:63539651..63539654,+#_ff13f51a990286586a726a44f2e602cap1@ENST00000430271
2.62e-23FFCP PHASE2:Hg19::chr17:79973593..79973633,-#_ff13f51a990286586a726a44f2e602cap@chr17:79973593..79973633, -
2.62e-23FFCP PHASE1:Hg19::chr5:134915254..134915270,-#_ff13f51a990286586a726a44f2e602cap3@CXCL14
2.62e-23FFCP PHASE1:Hg19::chr2:175412075..175412078,+#_ff13f51a990286586a726a44f2e602cap3@uc002uix.1
2.62e-23FFCP PHASE1:Hg19::chr16:7411388..7411391,+#_ff13f51a990286586a726a44f2e602cap@chr16:7411388..7411391, +
2.62e-23FFCP PHASE2:Hg19::chr7:120378721..120378730,-#_ff13f51a990286586a726a44f2e602cap@chr7:120378721..120378730, -
2.62e-23FFCP PHASE2:Hg19::chr2:97625602..97625628,-#_ff13f51a990286586a726a44f2e602cap@chr2:97625602..97625628, -
2.62e-23FFCP PHASE2:Hg19::chr1:33886874..33886882,-#_ff13f51a990286586a726a44f2e602cap@chr1:33886874..33886882, -
2.62e-23FFCP PHASE2:Hg19::chr10:65821760..65821780,+#_ff13f51a990286586a726a44f2e602cap@chr10:65821760..65821780, +
2.62e-23FFCP PHASE1:Hg19::chr7:68735137..68735150,+#_ff13f51a990286586a726a44f2e602cap@chr7:68735137..68735150, +
2.62e-23FFCP PHASE1:Hg19::chr6:998897..998898,-#_ff13f51a990286586a726a44f2e602cap@chr6:998897..998898, -
2.62e-23FFCP PHASE1:Hg19::chr15:71685918..71685922,-#_ff13f51a990286586a726a44f2e602cap@chr15:71685918..71685922, -
2.62e-23FFCP PHASE2:Hg19::chr8:57525935..57525942,+#_ff13f51a990286586a726a44f2e602cap@chr8:57525935..57525942, +

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