UBERON:0000025: Difference between revisions
From FANTOM5_SSTAR
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|id=UBERON:0000025
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|def="Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic st...") |
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Revision as of 17:07, 15 June 2012
| Name: | tube | ||
|---|---|---|---|
| Definition: | "Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues including lung and trachea, kidney, the mammary gland, the vascular system and the gastrointestinal and urinary-genital tracts. with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system" [GO:0035295, PMID:12526790] | ||
| Xrefs: |
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| Synonyms: | "epithelial or endothelial tube" EXACT [] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004111(anatomical conduit) |
|---|
Children
| is a: | UBERON:0000058 (duct),UBERON:0000117 (respiratory tube),UBERON:0000993 (oviduct),UBERON:0001555 (digestive tract),UBERON:0001855 (cochlear duct of membranous labyrinth),UBERON:0003889 (fallopian tube),UBERON:0003890 (Mullerian duct),UBERON:0003914 (epithelial tube),UBERON:0006555 (excretory tube) |
|---|---|
| part of: | UBERON:0013522 (subdivision of tube) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10019-101D1 (lung, adult, pool1)
- 10052-101G7 (aorta, adult, pool1)
- 10068-101I5 (lung, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10290-104G2
- 10318-105A3
- 10346-105D4
... further results Mouse (Mus musculus)
- 10019-101D1 (lung, adult, pool1)
- 10052-101G7 (aorta, adult, pool1)
- 10068-101I5 (lung, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10290-104G2
- 10318-105A3
- 10346-105D4
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000025 (tube), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.06e-55 | FFCP PHASE2:Hg19::chr19:46477244..46477302,-#_24f3f3694125d69ff53e35f528a5206f | p@chr19:46477244..46477302, - |
| 4.06e-55 | FFCP PHASE1:Hg19::chr19:46477244..46477302,-#_24f3f3694125d69ff53e35f528a5206f | p@chr19:46477244..46477302, - |
| 2.25e-51 | FFCP PHASE2:Hg19::chr19:46105411..46105481,-#_4a0e84366264e754b0b2fff17f009a70 | p1@GPR4, p2@OPA3 |
| 2.25e-51 | FFCP PHASE1:Hg19::chr19:46105411..46105481,-#_4a0e84366264e754b0b2fff17f009a70 | p1@GPR4, p2@OPA3 |
| 8.28e-50 | FFCP PHASE1:Hg19::chr4:145567297..145567355,+#_6453b1c6b243b60a0bcff4e2f38711d3 | p1@HHIP |
| 8.28e-50 | FFCP PHASE2:Hg19::chr4:145567297..145567355,+#_6453b1c6b243b60a0bcff4e2f38711d3 | p1@HHIP |
| 3.03e-47 | FFCP PHASE2:Hg19::chr4:145662551..145662554,+#_601a94cf4c3b176881398b0daa2e9770 | p@chr4:145662551..145662554, + |
| 3.03e-47 | FFCP PHASE1:Hg19::chr4:145662551..145662554,+#_601a94cf4c3b176881398b0daa2e9770 | p@chr4:145662551..145662554, + |
| 1.07e-46 | FFCP PHASE2:Hg19::chr19:54412517..54412583,+#_f8604c27688210daa4d1362bb7ba8e89 | p1@CACNG7 |
| 1.07e-46 | FFCP PHASE1:Hg19::chr19:54412517..54412583,+#_f8604c27688210daa4d1362bb7ba8e89 | p1@CACNG7 |
| 6.26e-46 | FFCP PHASE1:Hg19::chr19:46476791..46476819,-#_d3f48f5804ac2de352f863a98ea889e0 | p1@NOVA2 |
| 6.26e-46 | FFCP PHASE2:Hg19::chr19:46476791..46476819,-#_d3f48f5804ac2de352f863a98ea889e0 | p1@NOVA2 |
| 1.66e-45 | FFCP PHASE2:Hg19::chr6:153019069..153019091,+#_6f449d62e9875a2ff360f91f154fedcf | p1@MYCT1 |
| 1.66e-45 | FFCP PHASE1:Hg19::chr6:153019069..153019091,+#_6f449d62e9875a2ff360f91f154fedcf | p1@MYCT1 |
| 2.98e-45 | FFCP PHASE2:Hg19::chr16:66400578..66400600,+#_63fd7b4c5c6a29e3b3bae9bebb207271 | p1@CDH5 |
| 2.98e-45 | FFCP PHASE1:Hg19::chr16:66400578..66400600,+#_63fd7b4c5c6a29e3b3bae9bebb207271 | p1@CDH5 |
| 4.56e-45 | FFCP PHASE1:Hg19::chr8:21924000..21924036,+#_7230010cc950e8875712df59ccccc6cf | p4@EPB49 |
| 4.56e-45 | FFCP PHASE2:Hg19::chr8:21924000..21924036,+#_7230010cc950e8875712df59ccccc6cf | p4@EPB49 |
| 1.68e-44 | FFCP PHASE1:Hg19::chr19:54411852..54411908,+#_f6f31a992ccc4f8dc1b9083518d5d35f | p@chr19:54411852..54411908, + |
| 1.68e-44 | FFCP PHASE2:Hg19::chr19:54411852..54411908,+#_f6f31a992ccc4f8dc1b9083518d5d35f | p@chr19:54411852..54411908, + |
| 8.85e-44 | FFCP PHASE2:Hg19::chr4:145567767..145567851,+#_17d4616b9f9abafc199721e0517064e1 | p2@HHIP |
| 8.85e-44 | FFCP PHASE1:Hg19::chr4:145567767..145567851,+#_17d4616b9f9abafc199721e0517064e1 | p2@HHIP |
| 1.13e-41 | FFCP PHASE2:Hg19::chr8:55370487..55370503,+#_ba120aefcc30e986a79d883d42f84b98 | p1@SOX17 |
| 1.13e-41 | FFCP PHASE1:Hg19::chr8:55370487..55370503,+#_ba120aefcc30e986a79d883d42f84b98 | p1@SOX17 |
| 1.75e-41 | FFCP PHASE1:Hg19::chr2:133427767..133427797,-#_78fc8a1089f7c7f34fdc85250bbfdb85 | p1@LYPD1 |
| 1.75e-41 | FFCP PHASE2:Hg19::chr2:133427767..133427797,-#_78fc8a1089f7c7f34fdc85250bbfdb85 | p1@LYPD1 |
| 5.44e-41 | FFCP PHASE2:Hg19::chr3:195619579..195619630,-#_5e0d60162c364c9030236479eb2360b0 | p2@TNK2 |
| 5.44e-41 | FFCP PHASE1:Hg19::chr3:195619579..195619630,-#_5e0d60162c364c9030236479eb2360b0 | p2@TNK2 |
| 9.93e-41 | FFCP PHASE1:Hg19::chr2:228736335..228736397,+#_c489e3b0b5c9b506f040867786a20f24 | p1@WDR69 |
| 9.93e-41 | FFCP PHASE2:Hg19::chr2:228736335..228736397,+#_c489e3b0b5c9b506f040867786a20f24 | p1@WDR69 |
| 1.13e-40 | FFCP PHASE2:Hg19::chr9:101471138..101471256,-#_75ad5c7f5d9ba22f4f4bf78bf94f60ec | p1@GABBR2 |
| 1.13e-40 | FFCP PHASE1:Hg19::chr9:101471138..101471256,-#_75ad5c7f5d9ba22f4f4bf78bf94f60ec | p1@GABBR2 |
| 1.4e-40 | FFCP PHASE1:Hg19::chr4:145567278..145567296,+#_4881dbcb6b7103c5c2858ffa05edec03 | p3@HHIP |
| 1.4e-40 | FFCP PHASE2:Hg19::chr4:145567278..145567296,+#_4881dbcb6b7103c5c2858ffa05edec03 | p3@HHIP |
| 2.61e-40 | FFCP PHASE1:Hg19::chr10:15413035..15413131,-#_6732d626ff9ba5757d566c868b684bc6 | p1@FAM171A1 |
| 2.61e-40 | FFCP PHASE2:Hg19::chr10:15413035..15413131,-#_6732d626ff9ba5757d566c868b684bc6 | p1@FAM171A1 |
| 1.36e-39 | FFCP PHASE1:Hg19::chr9:27109440..27109456,+#_5eebd93faf08ad686ce843259491dc6a | p2@TEK |
| 1.36e-39 | FFCP PHASE2:Hg19::chr9:27109440..27109456,+#_5eebd93faf08ad686ce843259491dc6a | p2@TEK |
| 2.13e-39 | FFCP PHASE1:Hg19::chr15:57668695..57668734,+#_db5e1b05d3f3b71d2fc4522601648d34 | p1@CGNL1 |
| 2.13e-39 | FFCP PHASE2:Hg19::chr15:57668695..57668734,+#_db5e1b05d3f3b71d2fc4522601648d34 | p1@CGNL1 |
| 3.9e-39 | FFCP PHASE2:Hg19::chr4:145567426..145567455,+#_8e1bd79172010a593817bbfb41c907c0 | p5@HHIP |
| 3.9e-39 | FFCP PHASE1:Hg19::chr4:145567426..145567455,+#_8e1bd79172010a593817bbfb41c907c0 | p5@HHIP |
| 5.33e-39 | FFCP PHASE2:Hg19::chr19:16045331..16045344,-#_0ad232bf57d42458bff3346c4a962443 | p4@CYP4F11 |
| 5.33e-39 | FFCP PHASE1:Hg19::chr19:16045331..16045344,-#_0ad232bf57d42458bff3346c4a962443 | p4@CYP4F11 |
| 5.37e-39 | FFCP PHASE2:Hg19::chr9:27109392..27109435,+#_66fef9155e53eab218a62139d0f66452 | p1@TEK |
| 5.37e-39 | FFCP PHASE1:Hg19::chr9:27109392..27109435,+#_66fef9155e53eab218a62139d0f66452 | p1@TEK |
| 1.13e-38 | FFCP PHASE1:Hg19::chr15:44487453..44487476,-#_cf7b74574d2e9bacbfc2a19cfb9cf7e1 | p1@FRMD5 |
| 1.13e-38 | FFCP PHASE2:Hg19::chr15:44487453..44487476,-#_cf7b74574d2e9bacbfc2a19cfb9cf7e1 | p1@FRMD5 |
| 1.44e-38 | FFCP PHASE1:Hg19::chr16:19896150..19896205,-#_62ad7d097e53475d25a661f37414a1e2 | p1@GPRC5B |
| 1.44e-38 | FFCP PHASE2:Hg19::chr16:19896150..19896205,-#_62ad7d097e53475d25a661f37414a1e2 | p1@GPRC5B |
| 6.49e-38 | FFCP PHASE2:Hg19::chrX:50557095..50557207,-#_cd2f48fe3b85ffabef30ba6202e4fa53 | p1@SHROOM4 |
| 6.49e-38 | FFCP PHASE1:Hg19::chrX:50557095..50557207,-#_cd2f48fe3b85ffabef30ba6202e4fa53 | p1@SHROOM4 |
| 1.0e-37 | FFCP PHASE2:Hg19::chr19:46476654..46476725,-#_fd94832e5376342cc700554af17bd718 | p2@NOVA2 |
| 1.0e-37 | FFCP PHASE1:Hg19::chr19:46476654..46476725,-#_fd94832e5376342cc700554af17bd718 | p2@NOVA2 |
| 1.64e-37 | FFCP PHASE2:Hg19::chr5:87439352..87439386,-#_b8b8bdb676075c8b919449f18f2c4a7b | p@chr5:87439352..87439386, - |
| 1.64e-37 | FFCP PHASE1:Hg19::chr5:87439352..87439386,-#_b8b8bdb676075c8b919449f18f2c4a7b | p@chr5:87439352..87439386, - |
| 2.03e-37 | FFCP PHASE1:Hg19::chr6:136358591..136358656,+#_c574bb69f621c37cbd7d149ee43309a8 | p@chr6:136358591..136358656, + |
| 2.03e-37 | FFCP PHASE2:Hg19::chr6:136358591..136358656,+#_c574bb69f621c37cbd7d149ee43309a8 | p@chr6:136358591..136358656, + |
| 3.17e-37 | FFCP PHASE2:Hg19::chr8:55370720..55370733,+#_8a8b6f3086aaa1cebb29cf6615e0dbd4 | p2@SOX17 |
| 3.17e-37 | FFCP PHASE1:Hg19::chr8:55370720..55370733,+#_8a8b6f3086aaa1cebb29cf6615e0dbd4 | p2@SOX17 |
| 4.06e-37 | FFCP PHASE2:Hg19::chr11:19736307..19736327,-#_e9b067e745a8e1b895c016aad45f351d | p2@LOC100126784 |
| 4.06e-37 | FFCP PHASE1:Hg19::chr11:19736307..19736327,-#_e9b067e745a8e1b895c016aad45f351d | p2@LOC100126784 |
| 4.93e-37 | FFCP PHASE2:Hg19::chr7:108096770..108096784,-#_31a5373b28059957736deda7d709141f | p2@NRCAM |
| 4.93e-37 | FFCP PHASE1:Hg19::chr7:108096770..108096784,-#_31a5373b28059957736deda7d709141f | p2@NRCAM |
| 1.24e-36 | FFCP PHASE1:Hg19::chr10:88717337..88717379,-#_15bbf28e8fb51788097679338feab795 | p1@MMRN2 |
| 1.24e-36 | FFCP PHASE2:Hg19::chr10:88717337..88717379,-#_15bbf28e8fb51788097679338feab795 | p1@MMRN2 |
| 2.18e-36 | FFCP PHASE1:Hg19::chr6:170482999..170483030,+#_c95d971c487ccc84fe6c6aa5a7fb598a | p@chr6:170482999..170483030, + |
| 2.18e-36 | FFCP PHASE2:Hg19::chr6:170482999..170483030,+#_c95d971c487ccc84fe6c6aa5a7fb598a | p@chr6:170482999..170483030, + |
| 2.89e-36 | FFCP PHASE1:Hg19::chr5:11384884..11384916,-#_a943c3b3b248db14ea8f2cc3a7435330 | p8@CTNND2 |
| 2.89e-36 | FFCP PHASE2:Hg19::chr5:11384884..11384916,-#_a943c3b3b248db14ea8f2cc3a7435330 | p8@CTNND2 |
| 3.64e-36 | FFCP PHASE2:Hg19::chr2:50201220..50201261,-#_22545aa2c703a9966a22f15cf712a0be | p3@NRXN1 |
| 3.64e-36 | FFCP PHASE1:Hg19::chr2:50201220..50201261,-#_22545aa2c703a9966a22f15cf712a0be | p3@NRXN1 |
| 4.55e-36 | FFCP PHASE2:Hg19::chr10:134599649..134599653,-#_57b6a35dc0fe23afebf4877583ca78ee | p1@NKX6-2 |
| 4.55e-36 | FFCP PHASE1:Hg19::chr10:134599649..134599653,-#_57b6a35dc0fe23afebf4877583ca78ee | p1@NKX6-2 |
| 6.07e-36 | FFCP PHASE1:Hg19::chr3:50360165..50360183,-#_f25eb234f630c21d331def887576a875 | p2@HYAL2 |
| 6.07e-36 | FFCP PHASE2:Hg19::chr3:50360165..50360183,-#_f25eb234f630c21d331def887576a875 | p2@HYAL2 |
| 7.08e-36 | FFCP PHASE2:Hg19::chr8:21924052..21924103,+#_47786edaf84b8c4f9e73aca9b8f6475f | p6@EPB49 |
| 7.08e-36 | FFCP PHASE1:Hg19::chr8:21924052..21924103,+#_47786edaf84b8c4f9e73aca9b8f6475f | p6@EPB49 |
| 1.07e-35 | FFCP PHASE2:Hg19::chr7:36446001..36446028,+#_d5b02d473940d8e0756a3dd561681f0b | p4@ANLN |
| 1.07e-35 | FFCP PHASE1:Hg19::chr7:36446001..36446028,+#_d5b02d473940d8e0756a3dd561681f0b | p4@ANLN |
| 1.21e-35 | FFCP PHASE1:Hg19::chr1:45962297..45962320,-#_884022f8d0f465757d14af5f5f67caed | p@chr1:45962297..45962320, - |
| 1.21e-35 | FFCP PHASE2:Hg19::chr1:45962297..45962320,-#_884022f8d0f465757d14af5f5f67caed | p@chr1:45962297..45962320, - |
| 1.31e-35 | FFCP PHASE1:Hg19::chr17:5973740..5973785,+#_891a9be9953fd8dd0c72315cca0eeac2 | p1@WSCD1 |
| 1.31e-35 | FFCP PHASE2:Hg19::chr17:5973740..5973785,+#_891a9be9953fd8dd0c72315cca0eeac2 | p1@WSCD1 |
| 1.42e-35 | FFCP PHASE1:Hg19::chr17:54230819..54230848,+#_5948d1df288cff722350cb39b3fc2cb6 | p1@ANKFN1 |
| 1.42e-35 | FFCP PHASE2:Hg19::chr17:54230819..54230848,+#_5948d1df288cff722350cb39b3fc2cb6 | p1@ANKFN1 |
| 1.46e-35 | FFCP PHASE2:Hg19::chr10:83634077..83634101,+#_15354ce068325f1bfd5ffea2491509c3 | p@chr10:83634077..83634101, + |
| 1.46e-35 | FFCP PHASE1:Hg19::chr10:83634077..83634101,+#_15354ce068325f1bfd5ffea2491509c3 | p@chr10:83634077..83634101, + |
| 1.95e-35 | FFCP PHASE1:Hg19::chr6:12290586..12290600,+#_9623610ca816ac668482e194bf1e3367 | p1@EDN1 |
| 1.95e-35 | FFCP PHASE2:Hg19::chr6:12290586..12290600,+#_9623610ca816ac668482e194bf1e3367 | p1@EDN1 |
| 2.16e-35 | FFCP PHASE2:Hg19::chr5:146314142..146314146,-#_59b634e49c746311cba94ca2b9b6c3cb | p@chr5:146314142..146314146, - |
| 2.16e-35 | FFCP PHASE1:Hg19::chr5:146314142..146314146,-#_59b634e49c746311cba94ca2b9b6c3cb | p@chr5:146314142..146314146, - |
| 2.24e-35 | FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_29b10fec29e1c58adf34ece5c1c43e85 | p1@ENST00000412957 |
| 2.24e-35 | FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_29b10fec29e1c58adf34ece5c1c43e85 | p1@ENST00000412957 |
| 3.44e-35 | FFCP PHASE1:Hg19::chr20:19867269..19867283,+#_dd88d6e83f56a85a51735afa89548568 | p3@RIN2 |
| 3.44e-35 | FFCP PHASE2:Hg19::chr20:19867269..19867283,+#_dd88d6e83f56a85a51735afa89548568 | p3@RIN2 |
| 4.3e-35 | FFCP PHASE1:Hg19::chr3:184055379..184055401,+#_02ce7263a8f5f0fd2071b0cbbf793ec1 | p2@FAM131A |
| 4.3e-35 | FFCP PHASE2:Hg19::chr3:184055379..184055401,+#_02ce7263a8f5f0fd2071b0cbbf793ec1 | p2@FAM131A |
| 4.35e-35 | FFCP PHASE1:Hg19::chr5:141257961..141258006,-#_c70aaf52cb91365d2beb35c47adec4a3 | p1@PCDH1 |
| 4.35e-35 | FFCP PHASE2:Hg19::chr5:141257961..141258006,-#_c70aaf52cb91365d2beb35c47adec4a3 | p1@PCDH1 |
