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Revision as of 17:12, 15 June 2012

Name:hepatic sinusoid
Definition:"Wide thin-walled blood vessels in the liver. In mammals they have neither veinous or arterial markers." [Wikipedia:Hepatic_sinusoid, ZFIN:curator]
Xrefs:
links:

EHDAA:2199
EHDAA:3997
EHDAA:4003
EHDAA:6992
EHDAA:8084
EHDAA2:0000999
EMAPA:17365
FMA:17543
MA:0000367
ncithesaurus:Hepatic_Sinusoid
SCTID:67435004
TAO:0005091
VHOG:0000708

ZFA:0005091
Synonyms: "hepatic sinusoids" RELATED []
"liver sinusoid" EXACT []
"liver sinusoidal blood vessel" EXACT [OBOL:automatic]
"sinusoid of liver" EXACT [OBOL:automatic]
"sinusoidal blood vessel of liver" EXACT [OBOL:automatic]
"vas capillare sinusoideum" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:0003275
UBERON:FMA_17543-MA_0000367-ZFA_0005091
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000077(mixed endoderm/mesoderm-derived structure),UBERON:0003497(abdomen blood vessel),UBERON:0003909(sinusoid),UBERON:0005911(endo-epithelium)
part_of:UBERON:0002107(liver),UBERON:0004647(liver lobule)



Children

is a:FF:13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1),FF:13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2),FF:13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3),FF:13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1),FF:13599-146E8 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep2),FF:13600-146E9 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep3),FF:13601-146F1 (liver sinusoidal endothelial cells, partial hepatectomy, 30hr, biol_rep1),FF:13602-146F2 (liver sinusoidal endothelial cells, partial hepatectomy, 30hr, biol_rep2),FF:13603-146F3 (liver sinusoidal endothelial cells, partial hepatectomy, 30hr, biol_rep3),FF:13604-146F4 (liver sinusoidal endothelial cells, partial hepatectomy, 48hr, biol_rep1),FF:13605-146F5 (liver sinusoidal endothelial cells, partial hepatectomy, 48hr, biol_rep2),FF:13606-146F6 (liver sinusoidal endothelial cells, partial hepatectomy, 48hr, biol_rep3),FF:13607-146F7 (liver sinusoidal endothelial cells, partial hepatectomy, week01, biol_rep1),FF:13608-146F8 (liver sinusoidal endothelial cells, partial hepatectomy, week01, biol_rep2),FF:13609-146F9 (liver sinusoidal endothelial cells, partial hepatectomy, week01, biol_rep3)
derives from:FF:0000076 (hepatic sinusoidal endothelial cell sample)
part of:FF:0000076 (hepatic sinusoidal endothelial cell sample),CL:1000398 (endothelial cell of hepatic sinusoid)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
  • 11831-124G4
  • 11832-124G5
  • 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
  • 13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2)
  • 13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3)
  • 13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1)

... further results Mouse (Mus musculus)

  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
  • 11831-124G4
  • 11832-124G5
  • 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
  • 13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2)
  • 13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3)
  • 13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001281 (hepatic sinusoid), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.99e-131FFCP PHASE1:Hg19::chr7:158330204..158330217,+#_7f7f0c30fadbc3fe2909c5e93ffd97a2p2@ENST00000448698
8.99e-131FFCP PHASE2:Hg19::chr7:158330204..158330217,+#_7f7f0c30fadbc3fe2909c5e93ffd97a2p2@ENST00000448698
3.07e-86FFCP PHASE2:Mm9::chr17:12388232..12388237,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:12388232..12388237, +
3.07e-86FFCP PHASE1:Mm9::chr17:28107053..28107062,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:28107053..28107062, -
3.07e-86FFCP PHASE1:Mm9::chr13:113053257..113053258,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:113053257..113053258, +
3.07e-86FFCP PHASE1:Mm9::chr10:94580525..94580530,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:94580525..94580530, +
3.07e-86FFCP PHASE1:Mm9::chr16:30944451..30944485,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr16:30944451..30944485, +
3.07e-86FFCP PHASE2:Mm9::chr18:35881716..35881727,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:35881716..35881727, -
3.07e-86FFCP PHASE2:Mm9::chr2:84756280..84756286,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr2:84756280..84756286, +
3.07e-86FFCP PHASE1:Mm9::chr11:115280630..115280662,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:115280630..115280662, +
3.07e-86FFCP PHASE1:Mm9::chr12:86691575..86691580,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:86691575..86691580, -
3.07e-86FFCP PHASE1:Mm9::chr15:82209805..82209851,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:82209805..82209851, +
3.07e-86FFCP PHASE1:Mm9::chr11:88890706..88890745,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:88890706..88890745, +
3.07e-86FFCP PHASE1:Mm9::chr3:9705000..9705004,-#_6fce5d17c2d4fcdd0dfb645df56d5240p4@Pag1
3.07e-86FFCP PHASE1:Mm9::chr18:4336287..4336296,-#_6fce5d17c2d4fcdd0dfb645df56d5240p8@Map3k8
3.07e-86FFCP PHASE1:Mm9::chr13:100000226..100000230,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:100000226..100000230, +
3.07e-86FFCP PHASE1:Mm9::chr10:8586393..8586401,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:8586393..8586401, +
3.07e-86FFCP PHASE1:Mm9::chr17:35093764..35093773,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35093764..35093773, -
3.07e-86FFCP PHASE2:Mm9::chr16:28911901..28911906,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr16:28911901..28911906, -
3.07e-86FFCP PHASE2:Mm9::chr15:59435855..59435878,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:59435855..59435878, -
3.07e-86FFCP PHASE2:Mm9::chr9:45920408..45920437,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr9:45920408..45920437, -
3.07e-86FFCP PHASE2:Mm9::chr16:30944451..30944485,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr16:30944451..30944485, +
3.07e-86FFCP PHASE2:Mm9::chr15:82209805..82209851,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:82209805..82209851, +
3.07e-86FFCP PHASE1:Mm9::chr12:8400090..8400093,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:8400090..8400093, +
3.07e-86FFCP PHASE1:Mm9::chr18:35900327..35900366,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:35900327..35900366, +
3.07e-86FFCP PHASE1:Mm9::chr5:75375903..75375931,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:75375903..75375931, +
3.07e-86FFCP PHASE1:Mm9::chr16:11009028..11009039,+#_6fce5d17c2d4fcdd0dfb645df56d5240p4@Gm4262
3.07e-86FFCP PHASE1:Mm9::chr8:89310639..89310641,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:89310639..89310641, -
3.07e-86FFCP PHASE1:Mm9::chr8:111108947..111108951,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:111108947..111108951, +
3.07e-86FFCP PHASE2:Mm9::chr16:11009028..11009039,+#_6fce5d17c2d4fcdd0dfb645df56d5240p4@Gm4262
3.07e-86FFCP PHASE2:Mm9::chr11:109223779..109223789,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:109223779..109223789, -
3.07e-86FFCP PHASE2:Mm9::chr6:34549876..34549892,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:34549876..34549892, -
3.07e-86FFCP PHASE2:Mm9::chr8:114123814..114123821,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:114123814..114123821, -
3.07e-86FFCP PHASE2:Mm9::chr12:86691575..86691580,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:86691575..86691580, -
3.07e-86FFCP PHASE2:Mm9::chr11:88890706..88890745,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:88890706..88890745, +
3.07e-86FFCP PHASE1:Mm9::chr9:42915220..42915225,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr9:42915220..42915225, -
3.07e-86FFCP PHASE2:Mm9::chr15:32178407..32178408,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:32178407..32178408, -
3.07e-86FFCP PHASE1:Mm9::chr9:62199266..62199267,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr9:62199266..62199267, +
3.07e-86FFCP PHASE2:Mm9::chr17:48822294..48822295,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:48822294..48822295, -
3.07e-86FFCP PHASE2:Mm9::chr17:28107053..28107062,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:28107053..28107062, -
3.07e-86FFCP PHASE1:Mm9::chr6:129180613..129180616,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:129180613..129180616, +
3.07e-86FFCP PHASE2:Mm9::chr18:5125608..5125613,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:5125608..5125613, +
3.07e-86FFCP PHASE2:Mm9::chr2:133323630..133323631,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr2:133323630..133323631, +
3.07e-86FFCP PHASE1:Mm9::chr16:85801525..85801529,-#_6fce5d17c2d4fcdd0dfb645df56d5240p6@Adamts1
3.07e-86FFCP PHASE1:Mm9::chr6:48398664..48398684,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:48398664..48398684, -
3.07e-86FFCP PHASE1:Mm9::chr15:88669906..88669914,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:88669906..88669914, +
3.07e-86FFCP PHASE1:Mm9::chr1:137570295..137570315,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:137570295..137570315, +
3.07e-86FFCP PHASE2:Mm9::chr11:54785454..54785456,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:54785454..54785456, -
3.07e-86FFCP PHASE1:Mm9::chr18:5125608..5125613,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:5125608..5125613, +
3.07e-86FFCP PHASE1:Mm9::chr10:93819538..93819549,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:93819538..93819549, +
3.07e-86FFCP PHASE1:Mm9::chr17:35106363..35106372,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35106363..35106372, -
3.07e-86FFCP PHASE1:Mm9::chr11:109223756..109223764,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:109223756..109223764, -
3.07e-86FFCP PHASE2:Mm9::chr15:97402708..97402712,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:97402708..97402712, +
3.07e-86FFCP PHASE2:Mm9::chr4:43407825..43407830,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:43407825..43407830, +
3.07e-86FFCP PHASE1:Mm9::chr11:119254092..119254100,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:119254092..119254100, -
3.07e-86FFCP PHASE1:Mm9::chr10:85586219..85586227,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr10:85586219..85586227, +
3.07e-86FFCP PHASE1:Mm9::chr17:34798555..34798562,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:34798555..34798562, +
3.07e-86FFCP PHASE1:Mm9::chr17:67870501..67870507,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:67870501..67870507, +
3.07e-86FFCP PHASE1:Mm9::chr12:81955014..81955018,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:81955014..81955018, +
3.07e-86FFCP PHASE2:Mm9::chr4:86335502..86335509,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:86335502..86335509, +
3.07e-86FFCP PHASE2:Mm9::chr8:114250006..114250039,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:114250006..114250039, -
3.07e-86FFCP PHASE2:Mm9::chr17:35096519..35096524,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35096519..35096524, +
3.07e-86FFCP PHASE2:Mm9::chr8:86713876..86713879,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:86713876..86713879, +
3.07e-86FFCP PHASE1:Mm9::chr7:118133901..118133904,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr7:118133901..118133904, -
3.07e-86FFCP PHASE1:Mm9::chr6:15678147..15678149,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:15678147..15678149, -
3.07e-86FFCP PHASE1:Mm9::chr16:91441786..91441787,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr16:91441786..91441787, -
3.07e-86FFCP PHASE1:Mm9::chr11:117737077..117737096,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:117737077..117737096, -
3.07e-86FFCP PHASE2:Mm9::chr13:113554186..113554192,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:113554186..113554192, +
3.07e-86FFCP PHASE1:Mm9::chr7:109031260..109031268,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr7:109031260..109031268, +
3.07e-86FFCP PHASE1:Mm9::chr17:35945332..35945335,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35945332..35945335, +
3.07e-86FFCP PHASE2:Mm9::chr15:90508949..90508955,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:90508949..90508955, -
3.07e-86FFCP PHASE2:Mm9::chr5:114422970..114422985,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:114422970..114422985, -
3.07e-86FFCP PHASE1:Mm9::chr5:32912678..32912687,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:32912678..32912687, +
3.07e-86FFCP PHASE2:Mm9::chr17:34796428..34796430,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:34796428..34796430, -
3.07e-86FFCP PHASE1:Mm9::chr4:100890388..100890423,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:100890388..100890423, +
3.07e-86FFCP PHASE2:Mm9::chr5:64344878..64344887,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:64344878..64344887, -
3.07e-86FFCP PHASE1:Mm9::chr6:91441074..91441080,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:91441074..91441080, -
3.07e-86FFCP PHASE1:Mm9::chr17:35094068..35094092,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35094068..35094092, -
3.07e-86FFCP PHASE2:Mm9::chr11:107196799..107196814,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:107196799..107196814, +
3.07e-86FFCP PHASE1:Mm9::chr19:29573929..29573932,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr19:29573929..29573932, +
3.07e-86FFCP PHASE2:Mm9::chr12:100752983..100752984,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:100752983..100752984, +
3.07e-86FFCP PHASE1:Mm9::chr12:85288471..85288502,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:85288471..85288502, +
3.07e-86FFCP PHASE2:Mm9::chr1:132405466..132405470,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:132405466..132405470, +
3.07e-86FFCP PHASE1:Mm9::chr1:132405466..132405470,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:132405466..132405470, +
3.07e-86FFCP PHASE1:Mm9::chr14:101778294..101778296,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr14:101778294..101778296, +
3.07e-86FFCP PHASE1:Mm9::chr12:87046930..87046933,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr12:87046930..87046933, +
3.07e-86FFCP PHASE1:Mm9::chr5:76329688..76329692,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr5:76329688..76329692, -
3.07e-86FFCP PHASE1:Mm9::chr13:113554186..113554192,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr13:113554186..113554192, +
3.07e-86FFCP PHASE2:Mm9::chr11:115280630..115280662,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr11:115280630..115280662, +
3.07e-86FFCP PHASE1:Mm9::chr8:11183699..11183703,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr8:11183699..11183703, -
3.07e-86FFCP PHASE1:Mm9::chr4:141645056..141645068,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr4:141645056..141645068, +
3.07e-86FFCP PHASE2:Mm9::chr6:92938260..92938264,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr6:92938260..92938264, -
3.07e-86FFCP PHASE2:Mm9::chr18:39297570..39297573,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:39297570..39297573, -
3.07e-86FFCP PHASE1:Mm9::chr15:97402708..97402712,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr15:97402708..97402712, +
3.07e-86FFCP PHASE2:Mm9::chr17:35093616..35093631,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr17:35093616..35093631, -
3.07e-86FFCP PHASE1:Mm9::chr1:163794592..163794593,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr1:163794592..163794593, +
3.07e-86FFCP PHASE1:Mm9::chr18:65159026..65159034,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:65159026..65159034, -
3.07e-86FFCP PHASE1:Mm9::chr7:117101788..117101793,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr7:117101788..117101793, +
3.07e-86FFCP PHASE2:Mm9::chr18:65159026..65159034,-#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr18:65159026..65159034, -
3.07e-86FFCP PHASE2:Mm9::chr7:52781901..52781904,+#_6fce5d17c2d4fcdd0dfb645df56d5240p@chr7:52781901..52781904, +

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