Personal tools

DOID:5409: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{DOID |id=DOID:5409 |name=lung small cell carcinoma |namespace= |def= |xref= |is_a=DOID:3905 |synonym="Oat cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_3...")
 
No edit summary
Line 2: Line 2:
|id=DOID:5409
|id=DOID:5409
|name=lung small cell carcinoma
|name=lung small cell carcinoma
|namespace=
|namespace=disease_ontology
|def=
|def=
|xref=
|xref=MSH:D055752;;NCI:C4917;;OMIM:182280;;SNOMEDCT_2010_1_31:254632001;;SNOMEDCT_2010_1_31:254633006;;UMLS_CUI:C0149925
|is_a=DOID:3905
|is_a=DOID:3905
|synonym="Oat cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254633006];;"SCLC" EXACT [CSP2005:2017-6589];;"small cell carcinoma of lung" RELATED [];;"small cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254632001];;"small cell neuroendocrine carcinoma of lung" EXACT [NCI2004_11_17:C4917]
|synonym="Oat cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254633006];;"SCLC" EXACT [CSP2005:2017-6589];;"small cell carcinoma of lung" RELATED [];;"small cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254632001];;"small cell neuroendocrine carcinoma of lung" EXACT [NCI2004_11_17:C4917]
|comment=
|comment=OMIM mapping confirmed by DO. [SN].
|alt_id=
|alt_id=
|disjoint_from=
|disjoint_from=
Line 20: Line 20:
|located_in=
|located_in=
|part_of=
|part_of=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|preceded_by=
}}
}}

Revision as of 14:01, 11 June 2012

Name:lung small cell carcinoma
Namespace:disease_ontology
Xrefs:
links:

MSH:D055752
NCI:C4917
OMIM:182280
SNOMEDCT_2010_1_31:254632001
SNOMEDCT_2010_1_31:254633006

UMLS_CUI:C0149925
Synonyms: "Oat cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254633006]
"SCLC" EXACT [CSP2005:2017-6589]
"small cell carcinoma of lung" RELATED []
"small cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254632001]
"small cell neuroendocrine carcinoma of lung" EXACT [NCI2004_11_17:C4917]
Comments:OMIM mapping confirmed by DO. [SN].

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:3905(lung carcinoma)



Children
NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:5409 (lung small cell carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_5a0cadd9f97072f65b901942816bde31p@chr6:125378873..125378876, +
1.55e-98FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_5a0cadd9f97072f65b901942816bde31p@chr6:125378873..125378876, +
2.4e-66FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_40c90676995a138ba0819dfe8db6fb93p@chr8:40525350..40525354, -
2.4e-66FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_40c90676995a138ba0819dfe8db6fb93p@chr8:40525350..40525354, -
3.1e-50FFCP PHASE2:Hg19::chr8:97961177..97961185,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:97961177..97961185, -
3.1e-50FFCP PHASE1:Hg19::chr1:168756151..168756165,+#_5be4114e7d0131f457d60e83d77a108dp2@ENST00000420691
3.1e-50FFCP PHASE2:Hg19::chr4:39301903..39301910,-#_5be4114e7d0131f457d60e83d77a108dp@chr4:39301903..39301910, -
3.1e-50FFCP PHASE2:Hg19::chr12:133040060..133040064,+#_5be4114e7d0131f457d60e83d77a108dp@chr12:133040060..133040064, +
3.1e-50FFCP PHASE1:Hg19::chr6:64762702..64762707,+#_5be4114e7d0131f457d60e83d77a108dp@chr6:64762702..64762707, +
3.1e-50FFCP PHASE2:Hg19::chr8:98065877..98065881,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:98065877..98065881, -
3.1e-50FFCP PHASE2:Hg19::chr6:140771120..140771128,+#_5be4114e7d0131f457d60e83d77a108dp@chr6:140771120..140771128, +
3.1e-50FFCP PHASE1:Hg19::chr15:71685918..71685922,-#_5be4114e7d0131f457d60e83d77a108dp@chr15:71685918..71685922, -
3.1e-50FFCP PHASE1:Hg19::chr1:219599419..219599426,-#_5be4114e7d0131f457d60e83d77a108dp@chr1:219599419..219599426, -
3.1e-50FFCP PHASE2:Hg19::chr7:26482694..26482710,-#_5be4114e7d0131f457d60e83d77a108dp@chr7:26482694..26482710, -
3.1e-50FFCP PHASE1:Hg19::chr7:120383546..120383560,+#_5be4114e7d0131f457d60e83d77a108dp@chr7:120383546..120383560, +
3.1e-50FFCP PHASE1:Hg19::chr3:95401928..95401936,-#_5be4114e7d0131f457d60e83d77a108dp3@ENST00000494840, p3@uc003dro.1
3.1e-50FFCP PHASE1:Hg19::chr2:135170047..135170048,+#_5be4114e7d0131f457d60e83d77a108dp@chr2:135170047..135170048, +
3.1e-50FFCP PHASE2:Hg19::chr8:57526601..57526612,+#_5be4114e7d0131f457d60e83d77a108dp@chr8:57526601..57526612, +
3.1e-50FFCP PHASE2:Hg19::chr6:998897..998898,-#_5be4114e7d0131f457d60e83d77a108dp@chr6:998897..998898, -
3.1e-50FFCP PHASE1:Hg19::chr12:15722105..15722121,+#_5be4114e7d0131f457d60e83d77a108dp@chr12:15722105..15722121, +
3.1e-50FFCP PHASE2:Hg19::chr2:103235329..103235342,+#_5be4114e7d0131f457d60e83d77a108dp@chr2:103235329..103235342, +
3.1e-50FFCP PHASE1:Hg19::chr8:97962018..97962029,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:97962018..97962029, -
3.1e-50FFCP PHASE1:Hg19::chr14:36966895..36966899,-#_5be4114e7d0131f457d60e83d77a108dp@chr14:36966895..36966899, -
3.1e-50FFCP PHASE2:Hg19::chr10:129704395..129704457,+#_5be4114e7d0131f457d60e83d77a108dp@chr10:129704395..129704457, +
3.1e-50FFCP PHASE2:Hg19::chr3:1991867..1991875,-#_5be4114e7d0131f457d60e83d77a108dp@chr3:1991867..1991875, -
3.1e-50FFCP PHASE2:Hg19::chr2:97626442..97626445,-#_5be4114e7d0131f457d60e83d77a108dp@chr2:97626442..97626445, -
3.1e-50FFCP PHASE2:Hg19::chr21:38295313..38295326,-#_5be4114e7d0131f457d60e83d77a108dp@chr21:38295313..38295326, -
3.1e-50FFCP PHASE2:Hg19::chr4:81460545..81460547,-#_5be4114e7d0131f457d60e83d77a108dp@chr4:81460545..81460547, -
3.1e-50FFCP PHASE1:Hg19::chr13:76688920..76688924,+#_5be4114e7d0131f457d60e83d77a108dp@chr13:76688920..76688924, +
3.1e-50FFCP PHASE2:Hg19::chr2:241625475..241625482,+#_5be4114e7d0131f457d60e83d77a108dp8@ENST00000407635
3.1e-50FFCP PHASE1:Hg19::chr12:65516484..65516493,-#_5be4114e7d0131f457d60e83d77a108dp@chr12:65516484..65516493, -
3.1e-50FFCP PHASE1:Hg19::chr10:129703377..129703388,+#_5be4114e7d0131f457d60e83d77a108dp@chr10:129703377..129703388, +
3.1e-50FFCP PHASE2:Hg19::chr1:168756303..168756308,+#_5be4114e7d0131f457d60e83d77a108dp1@MGC4473
3.1e-50FFCP PHASE1:Hg19::chr9:17454052..17454060,+#_5be4114e7d0131f457d60e83d77a108dp@chr9:17454052..17454060, +
3.1e-50FFCP PHASE1:Hg19::chr6:23637711..23637717,-#_5be4114e7d0131f457d60e83d77a108dp@chr6:23637711..23637717, -
3.1e-50FFCP PHASE1:Hg19::chr3:86703154..86703166,-#_5be4114e7d0131f457d60e83d77a108dp@chr3:86703154..86703166, -
3.1e-50FFCP PHASE1:Hg19::chr2:220594710..220594720,+#_5be4114e7d0131f457d60e83d77a108dp3@ENST00000442416
3.1e-50FFCP PHASE2:Hg19::chr9:129234745..129234747,-#_5be4114e7d0131f457d60e83d77a108dp@chr9:129234745..129234747, -
3.1e-50FFCP PHASE1:Hg19::chr1:100110807..100110818,+#_5be4114e7d0131f457d60e83d77a108dp@chr1:100110807..100110818, +
3.1e-50FFCP PHASE1:Hg19::chr14:60958049..60958051,-#_5be4114e7d0131f457d60e83d77a108dp@chr14:60958049..60958051, -
3.1e-50FFCP PHASE2:Hg19::chr15:62007373..62007374,-#_5be4114e7d0131f457d60e83d77a108dp2@ENST00000559590
3.1e-50FFCP PHASE1:Hg19::chr2:91776712..91776739,+#_5be4114e7d0131f457d60e83d77a108dp@chr2:91776712..91776739, +
3.1e-50FFCP PHASE1:Hg19::chr17:39140411..39140419,-#_5be4114e7d0131f457d60e83d77a108dp5@KRT40
3.1e-50FFCP PHASE2:Hg19::chr20:45418126..45418131,-#_5be4114e7d0131f457d60e83d77a108dp@chr20:45418126..45418131, -
3.1e-50FFCP PHASE2:Hg19::chr13:76694533..76694542,+#_5be4114e7d0131f457d60e83d77a108dp@chr13:76694533..76694542, +
3.1e-50FFCP PHASE1:Hg19::chr2:97626550..97626562,-#_5be4114e7d0131f457d60e83d77a108dp@chr2:97626550..97626562, -
3.1e-50FFCP PHASE2:Hg19::chr6:31681859..31681865,-#_5be4114e7d0131f457d60e83d77a108dp3@LY6G6E
3.1e-50FFCP PHASE2:Hg19::chr2:222127471..222127478,-#_5be4114e7d0131f457d60e83d77a108dp@chr2:222127471..222127478, -
3.1e-50FFCP PHASE1:Hg19::chr12:51116443..51116452,+#_5be4114e7d0131f457d60e83d77a108dp@chr12:51116443..51116452, +
3.1e-50FFCP PHASE1:Hg19::chr11:69640133..69640140,+#_5be4114e7d0131f457d60e83d77a108dp@chr11:69640133..69640140, +
3.1e-50FFCP PHASE1:Hg19::chr14:57127818..57127825,+#_5be4114e7d0131f457d60e83d77a108dp@chr14:57127818..57127825, +
3.1e-50FFCP PHASE2:Hg19::chr17:39140411..39140419,-#_5be4114e7d0131f457d60e83d77a108dp5@KRT40
3.1e-50FFCP PHASE2:Hg19::chr4:6324309..6324314,-#_5be4114e7d0131f457d60e83d77a108dp43@PPP2R2C
3.1e-50FFCP PHASE2:Hg19::chr6:154858693..154858698,+#_5be4114e7d0131f457d60e83d77a108dp@chr6:154858693..154858698, +
3.1e-50FFCP PHASE1:Hg19::chr14:60194267..60194275,-#_5be4114e7d0131f457d60e83d77a108dp20@RTN1
3.1e-50FFCP PHASE2:Hg19::chr19:46763326..46763349,+#_5be4114e7d0131f457d60e83d77a108dp@chr19:46763326..46763349, +
3.1e-50FFCP PHASE2:Hg19::chr14:57127856..57127863,+#_5be4114e7d0131f457d60e83d77a108dp@chr14:57127856..57127863, +
3.1e-50FFCP PHASE2:Hg19::chr10:66459172..66459188,-#_5be4114e7d0131f457d60e83d77a108dp@chr10:66459172..66459188, -
3.1e-50FFCP PHASE2:Hg19::chrX:48394285..48394295,+#_5be4114e7d0131f457d60e83d77a108dp@chrX:48394285..48394295, +
3.1e-50FFCP PHASE1:Hg19::chr17:79970753..79970763,+#_5be4114e7d0131f457d60e83d77a108dp15@ASPSCR1
3.1e-50FFCP PHASE2:Hg19::chr5:79097476..79097484,+#_5be4114e7d0131f457d60e83d77a108dp@chr5:79097476..79097484, +
3.1e-50FFCP PHASE1:Hg19::chr12:84126726..84126727,-#_5be4114e7d0131f457d60e83d77a108dp@chr12:84126726..84126727, -
3.1e-50FFCP PHASE2:Hg19::chr1:199134722..199134729,+#_5be4114e7d0131f457d60e83d77a108dp@chr1:199134722..199134729, +
3.1e-50FFCP PHASE1:Hg19::chr2:97626013..97626024,+#_5be4114e7d0131f457d60e83d77a108dp@chr2:97626013..97626024, +
3.1e-50FFCP PHASE2:Hg19::chr9:17454062..17454088,+#_5be4114e7d0131f457d60e83d77a108dp@chr9:17454062..17454088, +
3.1e-50FFCP PHASE2:Hg19::chr7:111234799..111234807,-#_5be4114e7d0131f457d60e83d77a108dp@chr7:111234799..111234807, -
3.1e-50FFCP PHASE2:Hg19::chr4:185426203..185426209,-#_5be4114e7d0131f457d60e83d77a108dp@chr4:185426203..185426209, -
3.1e-50FFCP PHASE2:Hg19::chr3:86703174..86703181,-#_5be4114e7d0131f457d60e83d77a108dp@chr3:86703174..86703181, -
3.1e-50FFCP PHASE2:Hg19::chr2:220594730..220594748,+#_5be4114e7d0131f457d60e83d77a108dp2@ENST00000442416
3.1e-50FFCP PHASE1:Hg19::chr12:41194014..41194019,+#_5be4114e7d0131f457d60e83d77a108dp@chr12:41194014..41194019, +
3.1e-50FFCP PHASE2:Hg19::chr1:100110851..100110860,+#_5be4114e7d0131f457d60e83d77a108dp@chr1:100110851..100110860, +
3.1e-50FFCP PHASE2:Hg19::chr11:20362300..20362305,+#_5be4114e7d0131f457d60e83d77a108dp@chr11:20362300..20362305, +
3.1e-50FFCP PHASE1:Hg19::chr8:98075951..98075959,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:98075951..98075959, -
3.1e-50FFCP PHASE1:Hg19::chr8:38459926..38459928,+#_5be4114e7d0131f457d60e83d77a108dp@chr8:38459926..38459928, +
3.1e-50FFCP PHASE1:Hg19::chr6:44681761..44681769,-#_5be4114e7d0131f457d60e83d77a108dp@chr6:44681761..44681769, -
3.1e-50FFCP PHASE1:Hg19::chr3:102635374..102635381,-#_5be4114e7d0131f457d60e83d77a108dp@chr3:102635374..102635381, -
3.1e-50FFCP PHASE2:Hg19::chr9:95426545..95426559,-#_5be4114e7d0131f457d60e83d77a108dp@chr9:95426545..95426559, -
3.1e-50FFCP PHASE2:Hg19::chr16:13010590..13010593,+#_5be4114e7d0131f457d60e83d77a108dp@chr16:13010590..13010593, +
3.1e-50FFCP PHASE1:Hg19::chr4:157516018..157516023,+#_5be4114e7d0131f457d60e83d77a108dp@chr4:157516018..157516023, +
3.1e-50FFCP PHASE2:Hg19::chr8:98080543..98080550,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:98080543..98080550, -
3.1e-50FFCP PHASE1:Hg19::chr14:58448696..58448733,-#_5be4114e7d0131f457d60e83d77a108dp9@SLC35F4
3.1e-50FFCP PHASE1:Hg19::chr8:121815999..121816003,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:121815999..121816003, -
3.1e-50FFCP PHASE1:Hg19::chr3:150914192..150914197,+#_5be4114e7d0131f457d60e83d77a108dp@chr3:150914192..150914197, +
3.1e-50FFCP PHASE2:Hg19::chrX:154251771..154251775,-#_5be4114e7d0131f457d60e83d77a108dp@chrX:154251771..154251775, -
3.1e-50FFCP PHASE2:Hg19::chr7:26590563..26590574,-#_5be4114e7d0131f457d60e83d77a108dp@chr7:26590563..26590574, -
3.1e-50FFCP PHASE2:Hg19::chr16:66088105..66088108,-#_5be4114e7d0131f457d60e83d77a108dp@chr16:66088105..66088108, -
3.1e-50FFCP PHASE1:Hg19::chr16:13010571..13010578,+#_5be4114e7d0131f457d60e83d77a108dp@chr16:13010571..13010578, +
3.1e-50FFCP PHASE2:Hg19::chr2:208001650..208001675,-#_5be4114e7d0131f457d60e83d77a108dp@chr2:208001650..208001675, -
3.1e-50FFCP PHASE2:Hg19::chr2:130564567..130564572,-#_5be4114e7d0131f457d60e83d77a108dp2@LOC100131048
3.1e-50FFCP PHASE2:Hg19::chr15:85564362..85564385,+#_5be4114e7d0131f457d60e83d77a108dp@chr15:85564362..85564385, +
3.1e-50FFCP PHASE1:Hg19::chr8:98015305..98015315,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:98015305..98015315, -
3.1e-50FFCP PHASE1:Hg19::chr21:43917055..43917058,-#_5be4114e7d0131f457d60e83d77a108dp@chr21:43917055..43917058, -
3.1e-50FFCP PHASE2:Hg19::chr5:134915254..134915270,-#_5be4114e7d0131f457d60e83d77a108dp3@CXCL14
3.1e-50FFCP PHASE1:Hg19::chr13:104517168..104517170,+#_5be4114e7d0131f457d60e83d77a108dp@chr13:104517168..104517170, +
3.1e-50FFCP PHASE2:Hg19::chr17:79970753..79970763,+#_5be4114e7d0131f457d60e83d77a108dp15@ASPSCR1
3.1e-50FFCP PHASE1:Hg19::chrX:135764624..135764645,-#_5be4114e7d0131f457d60e83d77a108dp@chrX:135764624..135764645, -
3.1e-50FFCP PHASE1:Hg19::chr7:95766200..95766209,-#_5be4114e7d0131f457d60e83d77a108dp@chr7:95766200..95766209, -
3.1e-50FFCP PHASE1:Hg19::chr6:169224860..169224875,+#_5be4114e7d0131f457d60e83d77a108dp@chr6:169224860..169224875, +
3.1e-50FFCP PHASE2:Hg19::chr8:98015616..98015617,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:98015616..98015617, -
3.1e-50FFCP PHASE1:Hg19::chr14:58045800..58045814,-#_5be4114e7d0131f457d60e83d77a108dp@chr14:58045800..58045814, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=DOID:5409&oldid=1832301"